mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 2,178,908 | 0 | T | G | 35.9% | 117.8 / 32.0 | 92 | intergenic (‑128/+95) | thiM/rcnR | hydoxyethylthiazole kinase/transcriptional repressor of rcnA |
| * | CP009273 | 2,170,734 | 0 | G | T | 31.6% | 78.4 / 52.1 | 117 | intergenic (‑51/+257) | gatY/fbaB | D‑tagatose 1,6‑bisphosphate aldolase 2, catalytic subunit/fructose‑bisphosphate aldolase class I |
| * | CP009273 | 2,178,926 | 0 | C | A | 24.8% | 182.0 / 11.5 | 101 | intergenic (‑146/+77) | thiM/rcnR | hydoxyethylthiazole kinase/transcriptional repressor of rcnA |
| * | CP009273 | 104,041 | 0 | G | T | 23.4% | 158.3 / 12.8 | 77 | intergenic (+80/‑151) | lpxC/secM | UDP‑3‑O‑acyl N‑acetylglucosamine deacetylase/regulator of secA translation |
| * | CP009273 | 2,998,333 | 0 | T | A | 22.6% | 205.2 / 14.3 | 93 | Q271H (CAA→CAT) | ygeV | putative sigma‑54‑interacting transcriptional activator |
| * | CP009273 | 104,042 | 0 | A | T | 20.8% | 210.9 / 16.9 | 77 | intergenic (+81/‑150) | lpxC/secM | UDP‑3‑O‑acyl N‑acetylglucosamine deacetylase/regulator of secA translation |
| * | CP009273 | 2,170,746 | 0 | C | A | 20.8% | 256.6 / 11.3 | 133 | intergenic (‑63/+245) | gatY/fbaB | D‑tagatose 1,6‑bisphosphate aldolase 2, catalytic subunit/fructose‑bisphosphate aldolase class I |
| Marginal new junction evidence (lowest skew 10 of 12 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 270220 = | NA (NA) | 4 (0.030) | 4/268 | 7.8 | 2.5% | noncoding (15/335 nt) | IS911 | repeat region |
| ? | CP009273 | = 323505 | 153 (1.320) | coding (940/1473 nt) | betB | betaine aldehyde dehydrogenase, NAD‑dependent | |||||
| * | ? | CP009273 | = 4491259 | 106 (0.920) | 3 (0.030) | 3/264 | 8.3 | 2.5% | coding (183/330 nt) | yjgZ | uncharacterized protein |
| ? | CP009273 | 4526422 = | 132 (1.160) | intergenic (+574/+9) | yjhR/nanS | pseudogene, helicase family; putative frameshift suppressor/9‑O‑acetyl N‑acetylneuraminic acid esterase | |||||
| * | ? | CP009273 | 3453486 = | 158 (1.370) | 3 (0.030) | 3/262 | 8.3 | 2.1% | coding (311/1197 nt) | gspF | general secretory pathway component, cryptic |
| ? | CP009273 | 4095390 = | 132 (1.170) | coding (209/699 nt) | cpxR | response regulator in two‑component regulatory system with CpxA | |||||
| * | ? | CP009273 | = 3124263 | NA (NA) | 5 (0.040) | 3/262 | 8.3 | 4.1% | coding (727/1017 nt) | insH1 | IS5 transposase and trans‑activator |
| ? | CP009273 | 3155913 = | 119 (1.030) | coding (116/1413 nt) | ftsP | septal ring component that protects the divisome from stress; multicopy suppressor of ftsI(Ts) | |||||
| * | ? | CP009273 | 2655667 = | NA (NA) | 37 (0.330) | 3/262 | 8.3 | NA | intergenic (‑177/+275) | iscR/trmJ | isc operon transcriptional repressor; suf operon transcriptional activator; oxidative stress‑ and iron starvation‑inducible; autorepressor/tRNA mC32,mU32 2'‑O‑methyltransferase, SAM‑dependent |
| ? | CP009273 | = 2655939 | NA (NA) | intergenic (‑449/+3) | iscR/trmJ | isc operon transcriptional repressor; suf operon transcriptional activator; oxidative stress‑ and iron starvation‑inducible; autorepressor/tRNA mC32,mU32 2'‑O‑methyltransferase, SAM‑dependent | |||||
| * | ? | CP009273 | = 2398817 | 87 (0.750) | 3 (0.030) | 3/264 | 8.3 | 4.4% | intergenic (‑266/+365) | nuoA/lrhA | NADH:ubiquinone oxidoreductase, membrane subunit A/transcriptional repressor of flagellar, motility and chemotaxis genes |
| ? | CP009273 | = 2399074 | 45 (0.390) | intergenic (‑523/+108) | nuoA/lrhA | NADH:ubiquinone oxidoreductase, membrane subunit A/transcriptional repressor of flagellar, motility and chemotaxis genes | |||||
| * | ? | CP009273 | 2060073 = | 39 (0.340) | 5 (0.040) | 3/262 | 8.3 | 6.0% | noncoding (762/1195 nt) | IS5 | repeat region |
| ? | CP009273 | 3155916 = | 118 (1.040) | coding (113/1413 nt) | ftsP | septal ring component that protects the divisome from stress; multicopy suppressor of ftsI(Ts) | |||||
| * | ? | CP009273 | = 4243435 | 145 (1.250) | 3 (0.030) | 3/266 | 8.4 | 2.0% | coding (492/873 nt) | ubiA | p‑hydroxybenzoate octaprenyltransferase |
| ? | CP009273 | 4243439 = | 147 (1.280) | coding (496/873 nt) | ubiA | p‑hydroxybenzoate octaprenyltransferase | |||||
| * | ? | CP009273 | = 3370792 | 98 (0.850) | 5 (0.040) | 3/268 | 8.4 | 4.7% | intergenic (‑13/+382) | sspA/rpsI | stringent starvation protein A, phage P1 late gene activator, RNAP‑associated acid‑resistance protein, inactive glutathione S‑transferase homolog/30S ribosomal subunit protein S9 |
| ? | CP009273 | 3370797 = | 106 (0.920) | intergenic (‑18/+377) | sspA/rpsI | stringent starvation protein A, phage P1 late gene activator, RNAP‑associated acid‑resistance protein, inactive glutathione S‑transferase homolog/30S ribosomal subunit protein S9 | |||||
| * | ? | CP009273 | 2372998 = | 113 (0.980) | 3 (0.030) | 3/266 | 8.4 | 2.8% | coding (1125/1296 nt) | menF | isochorismate synthase 2 |
| ? | CP009273 | = 2373267 | 98 (0.850) | coding (856/1296 nt) | menF | isochorismate synthase 2 | |||||