mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 2,170,734 | 0 | G | T | 36.3% | 87.4 / 23.3 | 92 | intergenic (‑51/+257) | gatY/fbaB | D‑tagatose 1,6‑bisphosphate aldolase 2, catalytic subunit/fructose‑bisphosphate aldolase class I |
| * | CP009273 | 4,402,598 | 0 | C | G | 23.9% | 164.7 / 11.0 | 67 | S132C (TCT→TGT) | yjfM | DUF1190 family protein |
| * | CP009273 | 68,486 | 0 | T | G | 23.2% | 214.1 / 16.6 | 108 | L217V (TTG→GTG) | yabI | DedA family inner membrane protein |
| * | CP009273 | 104,042 | 0 | A | T | 21.9% | 181.4 / 16.2 | 66 | intergenic (+81/‑150) | lpxC/secM | UDP‑3‑O‑acyl N‑acetylglucosamine deacetylase/regulator of secA translation |
| * | CP009273 | 2,475,299 | 0 | C | A | 20.5% | 171.4 / 10.0 | 78 | M119I (ATG→ATT) | emrY | putative multidrug efflux system |
| * | CP009273 | 104,041 | 0 | G | T | 20.3% | 155.9 / 12.3 | 70 | intergenic (+80/‑151) | lpxC/secM | UDP‑3‑O‑acyl N‑acetylglucosamine deacetylase/regulator of secA translation |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 4532507 | 39 (0.360) | 4 (0.040) | 4/250 | 7.2 | 6.4% | intergenic (+57/‑425) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | CP009273 | = 4532803 | 80 (0.780) | intergenic (+353/‑129) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||
| * | ? | CP009273 | = 4280951 | 161 (1.470) | 5 (0.050) | 3/264 | 8.0 | 3.7% | coding (548/957 nt) | nrfD | formate‑dependent nitrite reductase, membrane subunit |
| ? | CP009273 | = 4379053 | 100 (0.930) | coding (135/3324 nt) | mscM | mechanosensitive channel protein, miniconductance | |||||
| * | ? | CP009273 | 23369 = | 142 (1.300) | 3 (0.030) | 3/262 | 8.0 | 2.3% | coding (979/2817 nt) | ileS | isoleucyl‑tRNA synthetase |
| ? | CP009273 | = 743997 | 114 (1.070) | coding (442/1062 nt) | ybgO | putative fimbrial protein | |||||
| * | ? | CP009273 | = 16592 | NA (NA) | 5 (0.050) | 3/262 | 8.0 | 4.1% | noncoding (1206/1345 nt) | IS186 | repeat region |
| ? | CP009273 | 68097 = | 119 (1.090) | coding (260/765 nt) | yabI | DedA family inner membrane protein | |||||
| * | ? | CP009273 | = 2199114 | 129 (1.180) | 3 (0.030) | 3/268 | 8.1 | 2.1% | coding (1040/1089 nt) | yehL | putative ABC superfamily transporter ATP‑binding subunit |
| ? | CP009273 | 3621077 = | 152 (1.390) | coding (1822/2736 nt) | rbbA | ribosome‑associated ATPase: ATP‑binding protein/ATP‑binding membrane protein | |||||
| * | ? | CP009273 | = 2046228 | 95 (0.870) | 7 (0.060) | 3/266 | 8.1 | 6.8% | pseudogene (582/1053 nt) | yeeL | pseudogene, glycosyltransferase homology |
| ? | CP009273 | 2046233 = | 97 (0.890) | pseudogene (577/1053 nt) | yeeL | pseudogene, glycosyltransferase homology | |||||
| * | ? | CP009273 | 685989 = | 130 (1.190) | 3 (0.030) | 3/266 | 8.1 | 2.6% | coding (349/1539 nt) | lnt | apolipoprotein N‑acyltransferase |
| ? | CP009273 | = 2353575 | 100 (0.920) | coding (57/1290 nt) | rhmT | putative L‑rhamnonate transporter | |||||
| * | ? | CP009273 | = 60251 | 97 (0.890) | 3 (0.030) | 3/268 | 8.1 | 2.3% | coding (96/660 nt) | rluA | dual specificity 23S rRNA pseudouridine(746), tRNA pseudouridine(32) synthase, SAM‑dependent |
| ? | CP009273 | 3443091 = | 159 (1.450) | coding (152/702 nt) | rpsC | 30S ribosomal subunit protein S3 | |||||