mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 2,170,734 | 0 | G | T | 43.4% | 33.5 / 71.9 | 106 | intergenic (‑51/+257) | gatY/fbaB | D‑tagatose 1,6‑bisphosphate aldolase 2, catalytic subunit/fructose‑bisphosphate aldolase class I |
| * | CP009273 | 2,178,908 | 0 | T | G | 30.3% | 174.8 / 25.1 | 99 | intergenic (‑128/+95) | thiM/rcnR | hydoxyethylthiazole kinase/transcriptional repressor of rcnA |
| * | CP009273 | 838,672 | 0 | G | T | 28.4% | 140.9 / 21.2 | 88 | M295I (ATG→ATT) | rlmF | 23S rRNA m(6)A1618 methyltransferase, SAM‑dependent |
| * | CP009273 | 838,658 | 0 | G | T | 26.8% | 134.6 / 11.4 | 83 | A291S (GCC→TCC) ‡ | rlmF | 23S rRNA m(6)A1618 methyltransferase, SAM‑dependent |
| * | CP009273 | 2,170,746 | 0 | C | A | 25.0% | 188.7 / 15.7 | 117 | intergenic (‑63/+245) | gatY/fbaB | D‑tagatose 1,6‑bisphosphate aldolase 2, catalytic subunit/fructose‑bisphosphate aldolase class I |
| * | CP009273 | 2,170,728 | 0 | T | A | 23.3% | 195.4 / 13.1 | 90 | intergenic (‑45/+263) | gatY/fbaB | D‑tagatose 1,6‑bisphosphate aldolase 2, catalytic subunit/fructose‑bisphosphate aldolase class I |
| * | CP009273 | 838,659 | 0 | C | G | 22.2% | 171.8 / 10.7 | 81 | A291G (GCC→GGC) ‡ | rlmF | 23S rRNA m(6)A1618 methyltransferase, SAM‑dependent |
| * | CP009273 | 838,675 | 0 | C | A | 21.8% | 151.6 / 22.0 | 87 | N296K (AAC→AAA) | rlmF | 23S rRNA m(6)A1618 methyltransferase, SAM‑dependent |
| * | CP009273 | 2,170,766 | 0 | C | A | 21.6% | 259.6 / 25.5 | 125 | intergenic (‑83/+225) | gatY/fbaB | D‑tagatose 1,6‑bisphosphate aldolase 2, catalytic subunit/fructose‑bisphosphate aldolase class I |
| * | CP009273 | 104,042 | 0 | A | T | 20.6% | 185.3 / 14.8 | 71 | intergenic (+81/‑150) | lpxC/secM | UDP‑3‑O‑acyl N‑acetylglucosamine deacetylase/regulator of secA translation |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 2308050 | 94 (0.800) | 4 (0.030) | 4/262 | 8.3 | 4.1% | coding (1084/2673 nt) | rcsD | phosphotransfer intermediate protein in two‑component regulatory system with RcsBC |
| ? | CP009273 | 2308055 = | 96 (0.830) | coding (1089/2673 nt) | rcsD | phosphotransfer intermediate protein in two‑component regulatory system with RcsBC | |||||
| * | ? | CP009273 | = 4291360 | 167 (1.420) | 3 (0.030) | 3/256 | 8.8 | 2.1% | coding (1536/2052 nt) | mdtO | membrane translocase (MDR) of MdtNOP efflux pump, PET family |
| ? | CP009273 | 4383728 = | 116 (1.020) | coding (157/1140 nt) | queG | epoxyqueuosine reductase, cobalamine‑stimulated; queosine biosynthesis | |||||
| * | ? | CP009273 | = 1298027 | 116 (0.980) | 3 (0.030) | 3/262 | 8.9 | 2.3% | coding (872/921 nt) | oppB | oligopeptide transporter subunit |
| ? | CP009273 | 3862535 = | 140 (1.210) | coding (135/1248 nt) | yidR | DUF3748 family protein | |||||
| * | ? | CP009273 | 266678 = | NA (NA) | 3 (0.030) | 3/260 | 8.9 | NA | coding (365/1152 nt) | insI1 | IS30 transposase |
| ? | CP009273 | = 266910 | NA (NA) | coding (597/1152 nt) | insI1 | IS30 transposase | |||||
| * | ? | CP009273 | = 2658877 | 129 (1.090) | 3 (0.030) | 3/264 | 9.0 | 2.3% | coding (84/1281 nt) | csiE | stationary phase inducible protein |
| ? | CP009273 | 2658881 = | 128 (1.090) | coding (88/1281 nt) | csiE | stationary phase inducible protein | |||||