mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 2,170,734 | 0 | G | T | 43.6% | ‑1.5 / 72.7 | 94 | intergenic (‑51/+257) | gatY/fbaB | D‑tagatose 1,6‑bisphosphate aldolase 2, catalytic subunit/fructose‑bisphosphate aldolase class I |
| * | CP009273 | 838,652 | 0 | T | G | 34.5% | 134.5 / 13.4 | 87 | F289V (TTT→GTT) | rlmF | 23S rRNA m(6)A1618 methyltransferase, SAM‑dependent |
| * | CP009273 | 4,402,596 | 0 | T | G | 30.0% | 125.2 / 11.6 | 70 | V131V (GTT→GTG) | yjfM | DUF1190 family protein |
| * | CP009273 | 104,041 | 0 | G | T | 29.1% | 128.5 / 33.7 | 79 | intergenic (+80/‑151) | lpxC/secM | UDP‑3‑O‑acyl N‑acetylglucosamine deacetylase/regulator of secA translation |
| * | CP009273 | 2,170,724 | 0 | G | T | 26.7% | 76.7 / 10.0 | 93 | intergenic (‑41/+267) | gatY/fbaB | D‑tagatose 1,6‑bisphosphate aldolase 2, catalytic subunit/fructose‑bisphosphate aldolase class I |
| * | CP009273 | 357,031 | 0 | C | A | 26.2% | 149.0 / 10.6 | 84 | V181F (GTT→TTT) | lacA | thiogalactoside acetyltransferase |
| * | CP009273 | 838,658 | 0 | G | T | 25.9% | 131.4 / 13.6 | 85 | A291S (GCC→TCC) | rlmF | 23S rRNA m(6)A1618 methyltransferase, SAM‑dependent |
| * | CP009273 | 838,672 | 0 | G | T | 24.2% | 158.2 / 22.2 | 99 | M295I (ATG→ATT) | rlmF | 23S rRNA m(6)A1618 methyltransferase, SAM‑dependent |
| * | CP009273 | 104,042 | 0 | A | T | 23.7% | 188.0 / 28.2 | 79 | intergenic (+81/‑150) | lpxC/secM | UDP‑3‑O‑acyl N‑acetylglucosamine deacetylase/regulator of secA translation |
| * | CP009273 | 1,160,002 | 0 | A | T | 22.5% | 227.2 / 15.0 | 89 | D151V (GAT→GTT) | nagZ | beta N‑acetyl‑glucosaminidase |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 2811301 | 108 (0.900) | 5 (0.050) | 4/226 | 7.2 | 5.2% | intergenic (‑82/+117) | argQ/argZ | tRNA‑Arg/tRNA‑Arg |
| ? | CP009273 | 2811851 = | 92 (0.900) | noncoding (58/77 nt) | argV | tRNA‑Arg | |||||
| * | ? | CP009273 | 1882819 = | 102 (0.850) | 4 (0.040) | 4/248 | 7.7 | 4.0% | coding (1185/1686 nt) | fadD | acyl‑CoA synthetase (long‑chain‑fatty‑acid‑‑CoA ligase) |
| ? | CP009273 | = 1882815 | 98 (0.870) | coding (1189/1686 nt) | fadD | acyl‑CoA synthetase (long‑chain‑fatty‑acid‑‑CoA ligase) | |||||
| * | ? | CP009273 | = 3754732 | 177 (1.470) | 3 (0.030) | 3/252 | 8.4 | 2.1% | coding (584/609 nt) | yibF | glutathione S‑transferase homolog |
| ? | CP009273 | 3755335 = | 108 (0.950) | intergenic (‑20/‑208) | yibF/rhsA | glutathione S‑transferase homolog/Rhs family protein, putative polymorphic toxin; putative polysaccharide synthesis/export protein; putative neighboring cell growth inhibitor | |||||
| * | ? | CP009273 | 4200380 = | NA (NA) | 3 (0.030) | 3/262 | 8.6 | 2.8% | noncoding (410/2904 nt) | rrlE | 23S ribosomal RNA of rrnE operon |
| ? | CP009273 | = 4377184 | 106 (0.880) | coding (2004/3324 nt) | mscM | mechanosensitive channel protein, miniconductance | |||||
| * | ? | CP009273 | = 409605 | 118 (0.980) | 3 (0.030) | 3/262 | 8.6 | 3.1% | coding (1605/3147 nt) | sbcC | exonuclease, dsDNA, ATP‑dependent |
| ? | CP009273 | 2003530 = | 74 (0.620) | coding (229/669 nt) | yedK | DUF159 family protein | |||||
| * | ? | CP009273 | 2251146 = | 97 (0.800) | 5 (0.040) | 3/264 | 8.7 | 4.5% | coding (701/939 nt) | psuG | pseudouridine 5'‑phosphate glycosidase |
| ? | CP009273 | = 4405525 | 118 (0.990) | coding (1434/1626 nt) | aidB | DNA alkylation damage repair protein; flavin‑containing DNA binding protein, weak isovaleryl CoA dehydrogenase | |||||
| * | ? | CP009273 | = 170134 | 139 (1.150) | 3 (0.020) | 3/266 | 8.7 | 2.3% | coding (1236/1281 nt) | hemL | glutamate‑1‑semialdehyde aminotransferase (aminomutase) |
| ? | CP009273 | = 170191 | 119 (0.990) | coding (1179/1281 nt) | hemL | glutamate‑1‑semialdehyde aminotransferase (aminomutase) | |||||