mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 2,170,734 | 0 | G | T | 39.4% | 46.8 / 67.3 | 99 | intergenic (‑51/+257) | gatY/fbaB | D‑tagatose 1,6‑bisphosphate aldolase 2, catalytic subunit/fructose‑bisphosphate aldolase class I |
| * | CP009273 | 838,652 | 0 | T | G | 27.3% | 117.5 / 13.1 | 66 | F289V (TTT→GTT) | rlmF | 23S rRNA m(6)A1618 methyltransferase, SAM‑dependent |
| * | CP009273 | 104,042 | 0 | A | T | 24.5% | 126.1 / 11.9 | 50 | intergenic (+81/‑150) | lpxC/secM | UDP‑3‑O‑acyl N‑acetylglucosamine deacetylase/regulator of secA translation |
| * | CP009273 | 2,632,621 | 0 | T | G | 22.8% | 184.6 / 11.9 | 79 | N8H (AAC→CAC) | yfgM | putative anti‑RcsB factor |
| * | CP009273 | 2,170,728 | 0 | T | A | 22.2% | 250.9 / 14.7 | 99 | intergenic (‑45/+263) | gatY/fbaB | D‑tagatose 1,6‑bisphosphate aldolase 2, catalytic subunit/fructose‑bisphosphate aldolase class I |
| * | CP009273 | 2,170,772 | 0 | T | A | 20.9% | 269.0 / 26.2 | 106 | intergenic (‑89/+219) | gatY/fbaB | D‑tagatose 1,6‑bisphosphate aldolase 2, catalytic subunit/fructose‑bisphosphate aldolase class I |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 1203246 = | 78 (0.780) | 8 (0.090) | 7/236 | 5.3 | 9.9% | coding (290/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | CP009273 | 1205075 = | 77 (0.880) | pseudogene (1/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | CP009273 | 4385920 = | 106 (1.060) | 3 (0.030) | 3/248 | 7.6 | 2.9% | coding (39/1338 nt) | amiB | N‑acetylmuramoyl‑l‑alanine amidase II |
| ? | CP009273 | = 4385916 | 101 (1.090) | coding (35/1338 nt) | amiB | N‑acetylmuramoyl‑l‑alanine amidase II | |||||
| * | ? | CP009273 | = 2397497 | 101 (1.010) | 3 (0.030) | 3/252 | 7.7 | 2.9% | coding (596/663 nt) | nuoB | NADH:ubiquinone oxidoreductase, chain B |
| ? | CP009273 | = 4230749 | 109 (1.160) | coding (1434/1476 nt) | xylE | D‑xylose transporter | |||||
| * | ? | CP009273 | 3133996 = | 78 (0.780) | 3 (0.030) | 3/262 | 7.9 | 3.0% | coding (163/489 nt) | hybE | hydrogenase 2‑specific chaperone |
| ? | CP009273 | 3781447 = | 117 (1.200) | coding (1250/1260 nt) | envC | activator of AmiB,C murein hydrolases, septal ring factor | |||||
| * | ? | CP009273 | = 2355111 | 84 (0.840) | 5 (0.050) | 3/260 | 7.9 | 4.4% | coding (580/783 nt) | rhmR | putative DNA‑binding transcriptional regulator for the rhm operon |
| ? | CP009273 | = 2997090 | 136 (1.410) | coding (243/480 nt) | xdhC | xanthine dehydrogenase, Fe‑S binding subunit | |||||
| * | ? | CP009273 | 443098 = | 105 (1.050) | 3 (0.030) | 3/266 | 8.0 | 2.6% | coding (64/891 nt) | cyoE | protoheme IX farnesyltransferase |
| ? | CP009273 | = 2577581 | 118 (1.190) | coding (1304/1980 nt) | aegA | putative oxidoreductase, FeS binding subunit/NAD/FAD‑binding subunit | |||||
| * | ? | CP009273 | 224199 = | NA (NA) | 3 (0.030) | 3/266 | 8.0 | NA | noncoding (1954/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon |
| ? | CP009273 | = 224478 | NA (NA) | noncoding (2233/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon | |||||
| * | ? | CP009273 | = 221244 | NA (NA) | 3 (0.030) | 3/266 | 8.0 | 1.9% | noncoding (987/1542 nt) | rrsH | 16S ribosomal RNA of rrnH operon |
| ? | CP009273 | 518107 = | 154 (1.540) | coding (2236/2415 nt) | ybbP | putative ABC transporter permease | |||||