mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 3,422,037 | 0 | A | T | 38.5% | 5.6 / 11.1 | 13 | noncoding (85/1542 nt) | rrsD | 16S ribosomal RNA of rrnD operon |
| * | CP009273 | 654,660 | 0 | C | T | 20.0% | 123.0 / 23.6 | 55 | intergenic (+54/+47) | tatE/lipA | TatABCE protein translocation system subunit/lipoate synthase |
| * | CP009273 | 654,661 | 0 | A | T | 20.0% | 115.1 / 23.8 | 55 | intergenic (+55/+46) | tatE/lipA | TatABCE protein translocation system subunit/lipoate synthase |
| * | CP009273 | 654,662 | 0 | A | T | 20.0% | 119.5 / 21.6 | 55 | intergenic (+56/+45) | tatE/lipA | TatABCE protein translocation system subunit/lipoate synthase |
| * | CP009273 | 654,663 | 0 | A | G | 20.0% | 114.5 / 25.6 | 55 | intergenic (+57/+44) | tatE/lipA | TatABCE protein translocation system subunit/lipoate synthase |
| Marginal new junction evidence (lowest skew 10 of 242 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 220861 | NA (NA) | 33 (0.430) | 25/258 | 3.0 | NA | noncoding (604/1542 nt) | rrsH | 16S ribosomal RNA of rrnH operon |
| ? | CP009273 | = 220890 | NA (NA) | noncoding (633/1542 nt) | rrsH | 16S ribosomal RNA of rrnH operon | |||||
| * | ? | CP009273 | 269746 = | NA (NA) | 31 (0.390) | 24/268 | 3.4 | NA | noncoding (1115/1195 nt) | IS5 | repeat region |
| ? | CP009273 | 269797 = | NA (NA) | noncoding (1064/1195 nt) | IS5 | repeat region | |||||
| * | ? | CP009273 | 2721617 = | NA (NA) | 24 (0.310) | 21/258 | 3.7 | NA | noncoding (927/2904 nt) | rrlG | 23S ribosomal RNA of rrnG operon |
| ? | CP009273 | 2721695 = | NA (NA) | noncoding (849/2904 nt) | rrlG | 23S ribosomal RNA of rrnG operon | |||||
| * | ? | CP009273 | 270331 = | NA (NA) | 31 (0.410) | 20/254 | 3.8 | NA | noncoding (126/335 nt) | IS911 | repeat region |
| ? | CP009273 | 270374 = | NA (NA) | noncoding (169/335 nt) | IS911 | repeat region | |||||
| * | ? | CP009273 | = 223172 | 17 (0.210) | 22 (0.290) | 19/258 | 4.1 | 57.7% | noncoding (927/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon |
| ? | CP009273 | 2721695 = | NA (NA) | noncoding (849/2904 nt) | rrlG | 23S ribosomal RNA of rrnG operon | |||||
| * | ? | CP009273 | 377428 = | NA (NA) | 28 (0.360) | 19/262 | 4.2 | NA | coding (299/906 nt) | insD1 | IS2 transposase TnpB |
| ? | CP009273 | 377513 = | NA (NA) | coding (384/906 nt) | insD1 | IS2 transposase TnpB | |||||
| * | ? | CP009273 | = 223101 | 41 (0.510) | 17 (0.220) | 17/258 | 4.5 | 37.8% | noncoding (856/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon |
| ? | CP009273 | = 223165 | 17 (0.220) | noncoding (920/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon | |||||
| * | ? | CP009273 | = 269984 | NA (NA) | 18 (0.230) | 16/262 | 4.9 | NA | noncoding (877/1195 nt) | IS5 | repeat region |
| ? | CP009273 | = 270130 | NA (NA) | noncoding (731/1195 nt) | IS5 | repeat region | |||||
| * | ? | CP009273 | 269672 = | NA (NA) | 18 (0.230) | 16/268 | 5.0 | NA | noncoding (1189/1195 nt) | IS5 | repeat region |
| ? | CP009273 | 269808 = | NA (NA) | noncoding (1053/1195 nt) | IS5 | repeat region | |||||
| * | ? | CP009273 | = 3297843 | NA (NA) | 14 (0.190) | 14/250 | 5.1 | NA | intergenic (+29/+89) | yhbW/mtr | putative luciferase‑like monooxygenase/tryptophan transporter of high affinity |
| ? | CP009273 | = 3297912 | NA (NA) | intergenic (+98/+20) | yhbW/mtr | putative luciferase‑like monooxygenase/tryptophan transporter of high affinity | |||||