mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 4,173,025 | 0 | A | T | 73.8% | 220.7 / 93.0 | 126 | Q618L (CAG→CTG) | rpoB | RNA polymerase, beta subunit |
| * | CP009273 | 3,997,395 | 0 | G | C | 26.3% | 119.7 / 17.6 | 62 | F48L (TTC→TTG) | rarD | putative chloramphenical resistance permease |
| * | CP009273 | 155,588 | 0 | C | A | 21.5% | 154.6 / 10.8 | 65 | C9F (TGC→TTC) | pcnB | poly(A) polymerase |
| * | CP009273 | 4,586,638 | 0 | G | C | 20.3% | 147.9 / 11.0 | 63 | E278Q (GAA→CAA) | yjjN | L‑galactonate oxidoreductase |
| * | CP009273 | 4,402,598 | 0 | C | G | 20.3% | 153.0 / 13.9 | 66 | S132C (TCT→TGT) | yjfM | DUF1190 family protein |
| Marginal new junction evidence (lowest skew 10 of 237 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 2721617 = | NA (NA) | 41 (0.420) | 28/256 | 4.1 | NA | noncoding (927/2904 nt) | rrlG | 23S ribosomal RNA of rrnG operon |
| ? | CP009273 | 2721695 = | NA (NA) | noncoding (849/2904 nt) | rrlG | 23S ribosomal RNA of rrnG operon | |||||
| * | ? | CP009273 | = 223172 | 37 (0.360) | 34 (0.340) | 22/256 | 5.2 | 49.2% | noncoding (927/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon |
| ? | CP009273 | 2721695 = | NA (NA) | noncoding (849/2904 nt) | rrlG | 23S ribosomal RNA of rrnG operon | |||||
| * | ? | CP009273 | = 4432583 | 128 (1.230) | 22 (0.220) | 19/264 | 6.2 | 16.4% | coding (385/1734 nt) | tamA | translocation and assembly module for autotransporter export, outer membrane subunit |
| ? | CP009273 | = 4432621 | 100 (0.980) | coding (423/1734 nt) | tamA | translocation and assembly module for autotransporter export, outer membrane subunit | |||||
| * | ? | CP009273 | 269746 = | NA (NA) | 18 (0.180) | 18/266 | 6.5 | NA | noncoding (1115/1195 nt) | IS5 | repeat region |
| ? | CP009273 | 269797 = | NA (NA) | noncoding (1064/1195 nt) | IS5 | repeat region | |||||
| * | ? | CP009273 | = 3297843 | NA (NA) | 15 (0.160) | 13/248 | 7.5 | NA | intergenic (+29/+89) | yhbW/mtr | putative luciferase‑like monooxygenase/tryptophan transporter of high affinity |
| ? | CP009273 | = 3297912 | NA (NA) | intergenic (+98/+20) | yhbW/mtr | putative luciferase‑like monooxygenase/tryptophan transporter of high affinity | |||||
| * | ? | CP009273 | 2336056 = | 58 (0.560) | 16 (0.160) | 12/258 | 8.1 | 21.4% | coding (1593/3753 nt) | yfaL | adhesin |
| ? | CP009273 | 2336123 = | 62 (0.620) | coding (1526/3753 nt) | yfaL | adhesin | |||||
| * | ? | CP009273 | 4199913 = | 54 (0.520) | 12 (0.120) | 12/262 | 8.2 | 18.6% | intergenic (+136/‑58) | gltV/rrlE | tRNA‑Glu/23S ribosomal RNA of rrnE operon |
| ? | CP009273 | 4199983 = | NA (NA) | noncoding (13/2904 nt) | rrlE | 23S ribosomal RNA of rrnE operon | |||||
| * | ? | CP009273 | 3296733 = | 138 (1.320) | 10 (0.110) | 10/242 | 8.4 | 8.2% | intergenic (+7/‑74) | yhbV/yhbW | U32 peptidase family protein/putative luciferase‑like monooxygenase |
| ? | CP009273 | 3296804 = | 100 (1.070) | intergenic (+78/‑3) | yhbV/yhbW | U32 peptidase family protein/putative luciferase‑like monooxygenase | |||||
| * | ? | CP009273 | 1390671 = | NA (NA) | 11 (0.110) | 11/260 | 8.5 | 14.4% | coding (339/1017 nt) | insH1 | IS5 transposase and trans‑activator |
| ? | CP009273 | = 1422501 | 68 (0.650) | noncoding (551/1196 nt) | IS5 | repeat region | |||||
| * | ? | CP009273 | = 270310 | NA (NA) | 11 (0.110) | 11/260 | 8.5 | NA | noncoding (105/335 nt) | IS911 | repeat region |
| ? | CP009273 | = 270490 | NA (NA) | noncoding (285/335 nt) | IS911 | repeat region | |||||