mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 2,632,628 | 0 | C | G | 24.1% | 140.0 / 12.6 | 59 | E5D (GAG→GAC) | yfgM | putative anti‑RcsB factor |
| Marginal new junction evidence (lowest skew 10 of 248 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 2721617 = | NA (NA) | 29 (0.390) | 21/254 | 3.7 | NA | noncoding (927/2904 nt) | rrlG | 23S ribosomal RNA of rrnG operon |
| ? | CP009273 | 2721695 = | NA (NA) | noncoding (849/2904 nt) | rrlG | 23S ribosomal RNA of rrnG operon | |||||
| * | ? | CP009273 | = 223172 | 21 (0.270) | 20 (0.270) | 14/254 | 5.3 | 50.1% | noncoding (927/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon |
| ? | CP009273 | 2721695 = | NA (NA) | noncoding (849/2904 nt) | rrlG | 23S ribosomal RNA of rrnG operon | |||||
| * | ? | CP009273 | = 220861 | NA (NA) | 17 (0.230) | 13/254 | 5.6 | NA | noncoding (604/1542 nt) | rrsH | 16S ribosomal RNA of rrnH operon |
| ? | CP009273 | = 220890 | NA (NA) | noncoding (633/1542 nt) | rrsH | 16S ribosomal RNA of rrnH operon | |||||
| * | ? | CP009273 | 220695 = | NA (NA) | 16 (0.210) | 13/262 | 5.8 | NA | noncoding (438/1542 nt) | rrsH | 16S ribosomal RNA of rrnH operon |
| ? | CP009273 | 220754 = | NA (NA) | noncoding (497/1542 nt) | rrsH | 16S ribosomal RNA of rrnH operon | |||||
| * | ? | CP009273 | 2720649 = | NA (NA) | 19 (0.250) | 11/260 | 6.4 | NA | noncoding (1895/2904 nt) | rrlG | 23S ribosomal RNA of rrnG operon |
| ? | CP009273 | 2720685 = | NA (NA) | noncoding (1859/2904 nt) | rrlG | 23S ribosomal RNA of rrnG operon | |||||
| * | ? | CP009273 | = 1586727 | 72 (0.910) | 11 (0.150) | 10/250 | 6.5 | 14.1% | intergenic (‑28/+195) | hipB/yneO | antitoxin of HipAB toxin‑antitoxin system/pseudogene, AidA homolog |
| ? | CP009273 | = 1586826 | 67 (0.910) | intergenic (‑127/+96) | hipB/yneO | antitoxin of HipAB toxin‑antitoxin system/pseudogene, AidA homolog | |||||
| * | ? | CP009273 | = 4161652 | 43 (0.540) | 11 (0.150) | 10/254 | 6.6 | 21.3% | noncoding (88/120 nt) | rrfB | 5S ribosomal RNA of rrnB operon |
| ? | CP009273 | = 4202999 | NA (NA) | noncoding (32/120 nt) | rrfE | 5S ribosomal RNA of rrnE operon | |||||
| * | ? | CP009273 | = 4033908 | NA (NA) | 11 (0.150) | 10/254 | 6.6 | 11.2% | noncoding (32/120 nt) | rrfA | 5S ribosomal RNA of rrnA operon |
| ? | CP009273 | = 4033964 | 92 (1.160) | noncoding (88/120 nt) | rrfA | 5S ribosomal RNA of rrnA operon | |||||
| * | ? | CP009273 | = 3940147 | 16 (0.200) | 11 (0.150) | 10/254 | 6.6 | 42.0% | noncoding (88/120 nt) | rrfC | 5S ribosomal RNA of rrnC operon |
| ? | CP009273 | = 4033908 | NA (NA) | noncoding (32/120 nt) | rrfA | 5S ribosomal RNA of rrnA operon | |||||
| * | ? | CP009273 | 3417059 = | 71 (0.900) | 11 (0.150) | 10/254 | 6.6 | 14.1% | noncoding (88/120 nt) | rrfD | 5S ribosomal RNA of rrnD operon |
| ? | CP009273 | = 4033908 | NA (NA) | noncoding (32/120 nt) | rrfA | 5S ribosomal RNA of rrnA operon | |||||