mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 2,170,734 | 0 | G | T | 46.0% | 7.2 / 60.3 | 74 | intergenic (‑51/+257) | gatY/fbaB | D‑tagatose 1,6‑bisphosphate aldolase 2, catalytic subunit/fructose‑bisphosphate aldolase class I |
| * | CP009273 | 2,178,908 | 0 | T | G | 36.7% | 84.3 / 17.0 | 60 | intergenic (‑128/+95) | thiM/rcnR | hydoxyethylthiazole kinase/transcriptional repressor of rcnA |
| * | CP009273 | 2,475,299 | 0 | C | A | 27.6% | 117.3 / 22.1 | 76 | M119I (ATG→ATT) | emrY | putative multidrug efflux system |
| * | CP009273 | 104,041 | 0 | G | T | 26.1% | 81.9 / 19.8 | 46 | intergenic (+80/‑151) | lpxC/secM | UDP‑3‑O‑acyl N‑acetylglucosamine deacetylase/regulator of secA translation |
| * | CP009273 | 2,404,729 | 0 | C | A | 24.6% | 120.9 / 15.2 | 69 | V35F (GTC→TTC) | yfbS | putative transporter |
| * | CP009273 | 763,412 | 0 | C | A | 24.1% | 128.4 / 14.4 | 79 | P658Q (CCA→CAA) | mngA | fused 2‑O‑a‑mannosyl‑D‑glycerate specific PTS enzymes: IIA component/IIB component/IIC component |
| * | CP009273 | 838,672 | 0 | G | T | 20.6% | 211.0 / 10.2 | 98 | M295I (ATG→ATT) | rlmF | 23S rRNA m(6)A1618 methyltransferase, SAM‑dependent |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 4532507 | 49 (0.490) | 6 (0.060) | 6/250 | 6.1 | 8.6% | intergenic (+57/‑425) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | CP009273 | = 4532803 | 82 (0.880) | intergenic (+353/‑129) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||
| * | ? | CP009273 | 1203246 = | 107 (1.070) | 4 (0.050) | 4/236 | 6.9 | 5.3% | coding (290/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | CP009273 | 1205075 = | 50 (0.570) | pseudogene (1/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | CP009273 | 4170593 = | 94 (0.940) | 5 (0.050) | 3/248 | 7.7 | 5.4% | coding (106/366 nt) | rplL | 50S ribosomal subunit protein L7/L12 |
| ? | CP009273 | = 4170589 | 87 (0.940) | coding (102/366 nt) | rplL | 50S ribosomal subunit protein L7/L12 | |||||
| * | ? | CP009273 | = 2128837 | 88 (0.880) | 3 (0.030) | 3/262 | 8.0 | 3.0% | coding (297/2163 nt) | wzc | colanic acid production tyrosine‑protein kinase; autokinase; Ugd phosphorylase |
| ? | CP009273 | 2807429 = | 111 (1.130) | coding (1455/1539 nt) | emrB | multidrug efflux system protein | |||||
| * | ? | CP009273 | 1410120 = | 86 (0.860) | 3 (0.030) | 3/262 | 8.0 | 2.7% | coding (1524/2601 nt) | recE | Rac prophage; exonuclease VIII, 5' ‑> 3' specific dsDNA exonuclease |
| ? | CP009273 | 3035498 = | 132 (1.350) | coding (827/981 nt) | ygfZ | iron‑sulfur cluster repair protein, plumbagin resistance | |||||
| * | ? | CP009273 | = 432764 | 84 (0.840) | 3 (0.030) | 3/262 | 8.0 | 3.4% | coding (828/975 nt) | yajO | 2‑carboxybenzaldehyde reductase |
| ? | CP009273 | = 1327550 | 89 (0.910) | coding (2246/2598 nt) | topA | DNA topoisomerase I, omega subunit | |||||
| * | ? | CP009273 | = 2637904 | 111 (1.110) | 3 (0.030) | 3/264 | 8.1 | 2.5% | coding (320/432 nt) | ndk | multifunctional nucleoside diphosphate kinase and apyrimidinic endonuclease and 3'‑phosphodiesterase |
| ? | CP009273 | 4150220 = | 120 (1.220) | coding (499/1401 nt) | sthA | pyridine nucleotide transhydrogenase, soluble | |||||
| * | ? | CP009273 | 1334664 = | 73 (0.730) | 3 (0.030) | 3/266 | 8.1 | 3.1% | coding (165/309 nt) | yciS | DUF1049 family inner membrane protein, function unknown |
| ? | CP009273 | 1359713 = | 118 (1.190) | coding (1225/1281 nt) | puuB | gamma‑glutamylputrescine oxidoreductase | |||||