New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 56684145 (0.210)46 (0.330)
+TTAGCCGCGTGTCCACTATTGCTGGGTAAGATCA		 13/118 17.1 39.7% noncoding (65/1258 nt) IS3 repeat region
?NC_000913 = 572471 175 (0.800)coding (6/456 nt) ybcN DLP12 prophage; uncharacterized protein
Rejected: Coverage evenness skew score above cutoff.

CTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/566776‑566841
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GTTCACGCTTCCCCTCCGCAGAGGTCAAACGCTAGATGCAA  <  NC_000913/572471‑572431
                                                                  ||||||||||||||||||||||||||||||||||                                         
CTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCA                                           >  1:1240228/1‑100
    TCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACTTAGCCGCGTGTCCATTATTGCTGGGTAAGATCAGTgc                                       >  1:4169725/1‑98
       TACCCAGCAATAGTGGACACGCGGCTAAGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTTCACG                                    >  1:4780332/1‑100
              CAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTT                                        >  2:2119848/1‑89
              CAATAGTGGACACGCAGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACTTAGCTGCGTGTCCACTATTGCTGGGTAAGATCAGTT                                        >  2:3325028/1‑89
                          CGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTTCACGCTTCCCCTCCGCAGAGGTC                 >  1:49060/1‑100
                          CGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTTCACGCTTCCCCTCCGCAGAGGTC                 >  1:4560861/1‑100
                          CGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTTCACGCTTCCCCTCCGCAGAGGTC                 >  1:3201270/1‑100
                          CGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTTCACGCTTCCCCT                            >  2:5182971/1‑89
                           GCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTTCACGCTTCCCCTCCGCAGAGGTCA                >  1:5468349/1‑100
                           GCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTTCACGCTTCCCCTC                           >  2:3435831/1‑89
                            CGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTTCTCGCTTCCCCTCC                          >  2:756433/1‑89
                            CGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTTCACGCTTCCCCTCCGCAGAGGTCAA               >  1:5033321/1‑100
                            CGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTTCACGCTTCCCCTCCGCAGAGGTCAA               >  1:3931620/1‑100
                            CGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTTCACGCTTCCCCTCCGCAGAGGTCAA               >  1:1351726/1‑100
                            CGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTTCACGCTTCCCCTCCGCAGAGGTCAA               >  1:1661697/1‑100
                            CGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTTCACGCTTCCCCTCC                          >  2:4002594/1‑89
                            CGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTTCACGCTTCCCCTCC                          >  2:3201093/1‑89
                            CGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTTCACGCTTCCCCTCC                          >  2:3103347/1‑89
                            CGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTTCACGCTTCCCCTCC                          >  2:3077140/1‑89
                            CGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTTCACGCTTCCCCTCC                          >  2:1342594/1‑89
                             GGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTTCACGCTTCCCCTCCGCAGAGGTCAAA              >  1:271792/1‑100
                             GGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTTCACGCTTCCCCTCCG                         >  2:3699901/1‑89
                             GGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTTCACGCTTCCCCTCCG                         >  2:4975000/1‑89
                             GGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACTTAGCCGCGTGTCCACTATCGCTGGGTAAGATCAGTTCACGCTTCCCCTCCG                         >  2:2457685/1‑89
                              GCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTTCACGCTTCCCCTCCGCAGAGGTCAAAC             >  1:3350947/1‑100
                              GCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTTCACGCTTCCCCTCCGCAGAGGTCAAAC             >  1:1652428/1‑100
                              GCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTTCACGCTTCCCCTCCGCAGAGGTCAAAC             >  1:839574/1‑100
                              GCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTTCACGCTTCCCCTCCGCAGAGGTCAAAC             >  1:1376973/1‑100
                              GCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTTCACGCTTCCCCTCCGCAGAGGTCAAAC             >  1:2861299/1‑100
                              GCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTTCACGCTTCCCCTCCGC                        >  2:1820050/1‑89
                              GCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTTCACGCTTCCCCTCCGC                        >  2:2710484/1‑89
                              GCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTTCACGCTTCCCCTCCGC                        >  2:3107976/1‑89
                              GCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTTCACGCTTCCCCTCCGC                        >  2:3732603/1‑89
                               CTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTTCACGCTTCCCCTCCGCAGAGGTCAAACG            >  1:1754164/1‑100
                               CTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTTCACGCTTCCCCTCCGCAGAGGTCAAACG            >  1:220199/1‑100
                               CTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACTTAGCCGCGCGTCCACTATTGCTGGGTAAGATCAGTTCACGCTTCCCCTCCGCA                       >  2:4285285/1‑89
                                TAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTTCACGCTTCCCCTCCGCAGAGGTCAAACGC           >  1:1089909/1‑100
                                TAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTTCACGCTTCCCCTCCGCAGAGGTCAAACGC           >  1:3078387/1‑100
                                TAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTTCACGCTTCCCCTCCGCAG                      >  2:895567/1‑89
                                  AGTGAGTAAACTCTCAGTCAGAGGTGACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTTCACGCTTCCCCTCCGCAGAG                    >  2:3516187/1‑89
                                   GTGAGTAAACTCTCAGTCAGAGGTGACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTTCACGCTTCCCCTCCGCAGAGGTCAAACGCTAG        >  1:1648628/1‑100
                                   GTGAGTAAACTCTCAGTCAGAGGTGACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTTCACGCTTCCCCTCCGCAGAGG                   >  2:4914076/1‑89
                                         AAACTCTCAGTCAGAGGTGACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTTCACGCTTCCCCTCCGCAGAGGTCAAACGCTAGATGCAA  >  1:928335/1‑100
                                         AAACTCTCAGTCAGAGGTGACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTTCACGCTTCCCCTCCGCAGAGGTCAAACGCTAGATGCAA  >  1:2350885/1‑100
                                         AAACTCTCAGTCAGAGGTGACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTTCACGCTTCCCCTCCGCAGAGGTCAAAC             >  2:4452625/1‑89
                                           ACTCTCAGTCAGAGGTGACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTTCACGCTTCCCCTCCGCAGAGGTCAAACGC           >  2:3849879/1‑89
                                                                  ||||||||||||||||||||||||||||||||||                                         
CTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/566776‑566841
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GTTCACGCTTCCCCTCCGCAGAGGTCAAACGCTAGATGCAA  <  NC_000913/572471‑572431

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.