mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,184,140 | 0 | A | T | 63.6% | 111.2 / 123.0 | 110 | I966F (ATC→TTC) | rpoB | RNA polymerase, beta subunit |
| * | NC_000913 | 4,188,573 | 0 | G | C | 38.4% | 131.3 / 184.5 | 138 | R1075P (CGT→CCT) | rpoC | RNA polymerase, beta prime subunit |
| * | NC_000913 | 4,296,060 | 0 | C | T | 26.6% | 249.1 / 103.7 | 169 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| Marginal new junction evidence (lowest skew 10 of 210 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 225078 = | NA (NA) | 18 (0.170) | 12/286 | 10.4 | NA | noncoding (1308/1542 nt) | rrsH | 16S ribosomal RNA of rrnH operon |
| ? | NC_000913 | 225100 = | NA (NA) | noncoding (1330/1542 nt) | rrsH | 16S ribosomal RNA of rrnH operon | |||||
| * | ? | NC_000913 | = 228108 | NA (NA) | 15 (0.140) | 12/292 | 10.6 | NA | noncoding (2350/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon |
| ? | NC_000913 | = 228124 | NA (NA) | noncoding (2366/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon | |||||
| * | ? | NC_000913 | = 225281 | NA (NA) | 13 (0.120) | 12/290 | 10.6 | NA | noncoding (1511/1542 nt) | rrsH | 16S ribosomal RNA of rrnH operon |
| ? | NC_000913 | = 225293 | NA (NA) | noncoding (1523/1542 nt) | rrsH | 16S ribosomal RNA of rrnH operon | |||||
| * | ? | NC_000913 | = 3946053 | 11 (0.100) | 15 (0.140) | 11/292 | 11.1 | 58.4% | noncoding (2350/2904 nt) | rrlC | 23S ribosomal RNA of rrnC operon |
| ? | NC_000913 | = 3946069 | NA (NA) | noncoding (2366/2904 nt) | rrlC | 23S ribosomal RNA of rrnC operon | |||||
| * | ? | NC_000913 | = 381669 | NA (NA) | 12 (0.110) | 9/286 | 11.9 | NA | noncoding (410/1331 nt) | IS2 | repeat region |
| ? | NC_000913 | = 381695 | NA (NA) | noncoding (436/1331 nt) | IS2 | repeat region | |||||
| * | ? | NC_000913 | 2726200 = | NA (NA) | 27 (0.250) | 9/288 | 12.0 | NA | intergenic (‑12/+81) | rrfG/rrlG | 5S ribosomal RNA of rrnG operon/23S ribosomal RNA of rrnG operon |
| ? | NC_000913 | 2726224 = | NA (NA) | intergenic (‑36/+57) | rrfG/rrlG | 5S ribosomal RNA of rrnG operon/23S ribosomal RNA of rrnG operon | |||||
| * | ? | NC_000913 | = 2818357 | 116 (1.050) | 8 (0.080) | 7/260 | 12.1 | 7.5% | intergenic (‑83/+116) | argY/argV | tRNA‑Arg/tRNA‑Arg |
| ? | NC_000913 | 2818492 = | 98 (1.020) | noncoding (58/77 nt) | argV | tRNA‑Arg | |||||
| * | ? | NC_000913 | 19693 = | 145 (1.310) | 9 (0.130) +55 bp |
3/190 | 12.1 | 8.9% | intergenic (+73/+118) | nhaR/insB1 | transcriptional activator of nhaA/IS1 transposase B |
| ? | NC_000913 | = 1050545 | NA (NA) | noncoding (768/768 nt) | IS1 | repeat region | |||||
| * | ? | NC_000913 | 19693 = | 145 (1.310) | 9 (0.130) +55 bp |
3/190 | 12.1 | 8.9% | intergenic (+73/+118) | nhaR/insB1 | transcriptional activator of nhaA/IS1 transposase B |
| ? | NC_000913 | 257908 = | NA (NA) | noncoding (768/768 nt) | IS1 | repeat region | |||||
| * | ? | NC_000913 | 2700550 = | 118 (1.070) | 7 (0.070) | 7/262 | 12.2 | 6.5% | noncoding (31/77 nt) | ohsC | sRNA antisense regulator of shoB toxin |
| ? | NC_000913 | 2700601 = | 100 (1.040) | intergenic (+5/+17) | ohsC/acpS | sRNA antisense regulator of shoB toxin/holo‑[acyl‑carrier‑protein] synthase 1 | |||||