| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 516059 | NA (NA) | 18 (0.050) | 12/148 | NT | NA | intergenic (+4127/‑2636) | recR/speA_2 | Recombination protein RecR/Arginine decarboxylase |
| ? | USA300TCH1516_ALE | = 516072 | NA (NA) | intergenic (+4140/‑2623) | recR/speA_2 | Recombination protein RecR/Arginine decarboxylase | |||||
Only 100 of 261 total aligned reads displayed.
GTAAGGACATGTGGAGCGCTTAGAAGTGAGAATGCCGGTGTGAGTAGCGAAAGACGGGTGAGAATCCCGTCCACCGATTGACTAAGGTTTCCAGAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/515964‑516059‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccagagCGGACGAGCCTTCCTCTGGAAACCTTAGTCAATCGGTGGACGGGATTCTCACCCGTCTTTCGCTACTCACACCGGCATTCTCACTTCTAA < USA300TCH1516_ALE/516072‑515983 GTAAGGACATGTGGAGCGCTTAGAAGTGAGAATGCCGGTGTGAGTAGCGAAAGACGGGTGAGAATCCCGTCCACCGATTGACTAAGGTTTC < 2:2710684/91‑1 gAAGGACATGTGGAGCGCTTAGAAGTGAGAATGCCGGTGTGAGTAGCGAAGGACGGGTGAGAATCCCGTCCACCGATTGACTAAGGTTTCC < 2:2027312/90‑1 TAAGGACATGTGGGGCGCTTAGAAGTGAGAATGCCGGTGTGAGTAGCGAAAGACGGGTGAGAATCCCGTCCACCGATTGACTAAGGTTTCC < 1:349809/91‑1 TAAGGACATGTGGAGCGCTTAGAAGTGAGAATGCCGGTGTGAGTAGCGAAAGACGGGTGAGAATCCCGTCCACCGATTGACTAAGGTTTCC > 1:3975416/1‑91 TAAGGACATGTGGAGCGCTTAGAAGTGAGAATGCCGGTGTGAGTAGCGAAAGACGGGTGAGAATCCCGTCCACCGATTGACTAAGGTTTCC < 1:4128262/91‑1 TAAGGACATGTGGAGCGCTTAGAAGTGAGAATGCCGGTGTGAGTAGCGAAAGACGGGTGAGAATCCCGTCCACCGATTGACTAAGGTTTCC > 1:3165657/1‑91 TAAGGACATGTGGAGCGCTTAGAAGTGAGAATGCCGGTGTGAGTAGCGAAAGACGGGTGAGAATCCCGTCCACCGATTGACTAAGGTTTCC < 1:748627/91‑1 TAAGGACATGTGGAGCGCTTAGAAGTGAGAATGCCGGTGTGAGTAGCGAAAGACGGGTGAGAATCCCGTCCACCGATTGACTAAGGTTTCC < 2:1714772/91‑1 TAAGGACATGTGGAGCGCTTAGAAGTGAGAATGCCGGTGTGAGTAGCGAAAGACGGGTGAGAATCCCGTCCACCGATTGACTAAGGTTTCC < 1:2122701/91‑1 TAAGGACATGTGGAGCGCTTAGAAGTGAGAATGCCGGTGTGAGTAGCGAAAGACGGGTGAGAATCCCGTCCACCGATTGACTAAGGTTTCC < 2:2991263/91‑1 TAAGGACATGTGGAGCGCTTAGAAGTGAGAATGCCGGTGTGAGTAGCGAAAGACGGGTGAGAATCCCGTCCACCGATTGACTAAGGTTTCC > 2:6640794/1‑91 TAAGGACATGTGGAGCGCTTAGAAGTGAGAATGCCGGTGTGAGTAGCGAAAGACGGGTGAGAATCCCGTCCACCGATTGACTAAGGTTTCC < 2:676137/91‑1 TAAGGACATGTGGAGCGCTTAGAAGTGAGAATGCCGGTGTGAGTAGCGAAAGACGGGTGAGAATCCCGTCCACCGATTGACTAAGGTTTCC < 1:1286455/91‑1 TAAGGACATGTGGAGCGCTTAGAAGTGAGAATGCCGGTGTGAGTAGCGAAAGACGGGCGAGAATCCCGTCCACCGATTGACTAAGGTTTCC > 2:5807253/1‑91 AAGGACATGTGGAGCGCTTAGAAGTGAGAATGCCGGTGTGAGTAGCGAAAGACGGGTGAGAATCCCGTCCACCGATTGACTAAGGTTTCCA < 2:3980109/91‑1 AAGGACATGTGGAGCGCTTAGAAGTGAGAATGCCGGTGTGAGTAGCGAAAGACGGGTGAGAATCCCGTCCACCGATTGACTAAGGTTTCCA > 2:5489094/1‑91 AAGGACATGTGGAGCGCTTAGAAGTGAGAATGCCGGTGTGAGTAGCGAAAGACGGGTGAGAATCCCGTCCACCGATTGACTAAGGTTTCCA > 2:1047433/1‑91 AAGGACATGTGGAGCGCTTAGAAGTGAGAATGCCGGTGTGAGTAGCGAAAGACGGGTGAGAATCCCGTCCACCGATTGACTAAGGTTTCCA < 1:6517859/91‑1 AAGGACATGTGGAGCGCTTAGAAGTGAGAATGCCGGTGTGAGTAGCGAAAGACGGGTGAGAATCCCGTCCACCGATTGACTAAGGTTTCCA > 1:5447630/1‑91 AAGGACATGTGGAGCGCTTAGAAGTGAGAATGCCGGTGTGAGTAGCGAAAGACGGGTGAGAATCCCGTCCACCGATTGACTAAGGTTTCCA > 1:4273346/1‑91 AAGGACATGTGGAGCGCTTAGAAGTGAGAATGCCGGTGTGAGTAGCGAAAGACGGGTGAGAATCCCGTCCACCGATTGACTAAGGTTTCCA < 2:874196/91‑1 AAGGACATGTGGAGCGCTTAGAAGTGAGAATGCCGGTGTGAGTAGCGAAAGACGGGTGAGAATCCCGTCCACCGATTGACTAAGGTTTCCA < 1:978004/91‑1 AAGGACATGTGGAGCGCTTAGAAGTGAGAATGCCGGTGTGAGTAGCGAAAGACGGGTGAGAATCCCGTCCACCGATTGACTAAGGTTTCCA < 1:2894224/91‑1 AAGGACATGTGGAGCGCTTAGAAGTGAGAATGCCGGTGTGAGTAGCGAAAGACGGGTGAGAATCCCGTCCACCGATTGACTAAGGTTTCCA < 1:1554871/91‑1 AGGCCATGTGGAGCGCTTAGAAGTGAGAATGCCGGTGTGAGTAGCGAAAGACGGGTGAGAATCCCGTCCACCGATTGACTAAGGTTTCCAG > 2:5945961/1‑91 AGGACATGTGGAGCGCTTAGAAGTGAGAATGCCGGTGTGAGTAGCGAAAGACGGGTGAGAATCCCGTCCACCGATTGACTAAGGTTTCCAG > 1:3685295/1‑91 AGGACATGTGGAGCGCTTAGAAGTGAGAATGCCGGTGTGAGTAGCGAAAGACGGGTGAGAATCCCGTCCACCGATTGACTAAGGTTTCCAG > 1:2725224/1‑91 AGGACATGTGGAGCGCTTAGAAGTGAGAATGCCGGTGTGAGTAGCGAAAGACGGGTGAGAATCCCGTCCACCGATTGACTAAGGTTTCCAG > 2:4279686/1‑91 AGGACATGTGGAGCGCTTAGAAGTGAGAATGCCGGTGTGAGTAGCGAAAGACGGGTGAGAATCCCGTCCACCGATTGACTAAGGTTTCCAG > 2:4713333/1‑91 GGACATGTGGAGCGCTTAGAAGTGAGAATGCCGGTGTGAGTAGCGAAAGACGGGTGAGAATCCCGTCCACCGATTGACTAAGGTTTCCAGA > 2:6567692/1‑91 GGACATGTGGAGCGCTTAGAAGTGAGAATGCCGGTGTGAGTAGCGAAAGACGGGTGAGAATCCCGTCCACCGATTGACTAAGGTTTCCAGA < 2:415265/91‑1 GGACATGTGGAGCGCTTAGAAGTGAGAATGCCGGTGTGAGTAGCGAAAGACGGGTGAGAATCCCGTCCACCGATTGACTAAGGTTTCCAGA > 2:3045957/1‑91 GGACATGTGGAGCGCTTAGAAGTGAGAATGCCGGTGTGAGTAGCGAAAGACGGGTGAGAATCCCGTCCACCGATTGACTAAGGTTTCCAGA > 1:3089288/1‑91 GGACATGTGGAGCGCTTAGAAGTGAGAATGCCGGTGTGAGTAGCGAAAGACGGGTGAGAATCCCGTCCACCGATTGACTAAGGTTTCCAGA < 1:1473753/91‑1 GGACATGTGGAGCGCTTAGAAGTGAGAATGCCGGTGTGAGTAGCGAAAGACGGGTGAGAATCCCGTCCACCGATTGACTAAGGTTTCCAGA < 1:686604/91‑1 GGACATGTGGAGCGCTTAGAAGTGAGAATGCCGGTGTGAGTAGCGAAAGACGGGTGAGAATCCCGTCCACCGATTGACTAAGGTTTCCAGA > 2:5338121/1‑91 GACATGTGGAGCGCTTAGAAGTGAGAATGCCGGTGTGAGTAGCGAAAGACGGGTGAGAATCCCGTCCACCGATTGACTAAGGTTTCCAGAG < 2:3972180/91‑1 GACATGTGGAGCGCTTAGAAGTGAGAATGCCGGTGTGAGTAGCGAAAGACGGGTGAGAATCCCGTCCACCGATTGACTAAGGTTTCCAGAG > 1:2041866/1‑91 GACATGTGGAGCGCTTAGAAGTGAGAATGCCGGTGTGAGTAGCGAAAGACGGGTGAGAATCCCGTCCACCGATTGACTAAGGTTTCCAGAG > 1:5922194/1‑91 GACATGTGGAGCGCTTAGAAGTGAGAATGCCGGCGTGAGGAGCGAAAGACGGGTGAGAATCCCGTCCACCGGTTGACTAAGGTTGCCAGAG > 2:6125839/1‑91 CTTAGAAGTGAGAATGCCGGTGTGAGTAGCGAAAGACGGGTGAGAATCCCGTCCACCGATTGACTAAGGTTTCCAGAGCGGACGAGCCTTC < 2:1455518/91‑1 TTAGAAGTGAGAATGCCGGTGTGAGTAGCGAAAGACGGGTGAGAATCCCGTCCACCGATTGACTAAGGTTTCCAGAGCGGACGAGCCTTCC < 2:3171122/91‑1 AGAAGTGAGAATGCCGGTGTGAGTAGCGAAAGACGGGTGAGAATCCCGTCCACCGATTGACTAAGGTTTCCAGAGCGGACGAGCCTTCCTC < 1:2566430/91‑1 AAGTGAGAATGCCGGTGTGAGTAGCGAAAGACGGGTGAGAATCCCGTCCACCGATTGACTAAGGTTTCCAGAGCGGACGAGCCTTCCTCTG < 1:594814/91‑1 AGTGAGAATGCCGGTGTGAGTAGCGAAAGACGGGTGAGAATCCCGTCCACCGATTGACTAAGGTTTCCAGAGCGGACGAGCCTTCCTCTGG < 1:2225882/91‑1 TGAGAATGCCGGTGGGAGTAGCGAAAGACGGGTGAGAATCCCGTCCACCGATGGACTAAGGTTTCCAGAGCGGACGAGCCTTCCTCTGGAA < 2:1515487/91‑1 GAATGCCGGTGTGAGTAGCGAAAGACGGGTGAGAATCCCGTCCACCGATTGACTAA‑‑‑‑CCCAGAGCGGACGAGCCTTCCTCTGGAAACCTTAG < 1:3820300/91‑1 CGGGTGAGAAGCCCGTCCACCGATTGACTAAGGTTTCCAGAGCGGACGAGCCTTCCTCTGGACACCTTAGTCAATCGGTGGACGGGATTCT < 2:1262313/91‑1 CCAGAGCGGACGAGCCTTCCTCTGGAAACCTTAGTCAATCGGTGGACGGGATTCTCACCCGTCTTTCGCTACTCACACCGGCATTCTCACT < 2:3419674/91‑1 CCAGAGCGGACGAGCCTTCCTCTGGAAACCTTAGTCAATCGGTGGACGGGATTCTCACCCGTCTTTCGCTACTCACACCGGCATTCTCACT > 2:3777012/1‑91 CCAGAGCGGACGAGCCTTCCTCTGGAAACCTTAGTCAATCGGTGGACGGGATTCTCACCCGTCTTTCGCTACTCACACCGGCATTCTCACT < 2:6304139/91‑1 CCAGAGCGGACGAGCCTTCCTCTGGAAACCTTAGTCAATCGGTGGACGGGATTCTCACCCGTCTTTCGCTACTCACACCGGCATTCTCACT < 2:4900121/91‑1 CCAGAGCGGACGAGCCTTCCTCTGGAAACCTTAGTCAATCGGTGGACGGGATTCTCACCCGTCTTTCGCTACTCACACCGGCATTCTCACT > 2:659406/1‑91 CCAGAGCGGACGAGCCTTCCTCTGGAAACCTTAGTCAATCGGTGGACGGGATTCTCACCCGTCTTTCGCTACTCACACCGGCATTCTCACT > 2:5001637/1‑91 CCAGAGCGGACGAGCCTTCCTCTGGAAACCTTAGTCAATCGGTGGACGGGATTCTCACCCGTCTTTCGCTACTCACACCGGCATTCTCACT > 2:5278928/1‑91 CCAGAGCGGACGAGCCTTCCTCTGGAAACCTTAGTCAATCGGTGGACGGGATTCTCACCCGTCTTTCGCTACTCACACCGGCATTCTCACT < 2:5427351/91‑1 CCAGAGCGGACGAGCCTTCCTCTGGAAACCTTAGTCAATCGGTGGACGGGATTCTCACCCGTCTTTCGCTACTCACACCGGCATTCTCACT < 1:4970919/91‑1 CCAGAGCGGACGAGCCTTCCTCTGGAAACCTTAGTCAATCGGTGGACGGGATTCTCACCCGTCTTTCGCTACTCACACCGGCATTCTCACT > 1:4367715/1‑91 CAGAGCGGACGAGCCTTCCTCTGGAAACCTTAGTCAATCGGTGGTAGGGATTCTCACCCGTCTTTCGCTACTCACACCGGCATTCTCACTT > 2:6775427/1‑91 CAGAGCGGACGAGCCTTCCTCTGGAAACCTTAGTCAATCGGTGGACGGGATTCTCACCCGTCTTTCGCTACTCACACCGGCATTCTCACTT < 1:298732/91‑1 gGAGCGGACGAGCCTTCCTCTGGAAACCTTAGTCAATCGGTGGACGGGATTCTCACCCGTCTTTCGCTACTCACACCGGCATTCTCACTTC < 2:3901047/90‑1 aggGCGGACGAGCCTTCCTCTGGAAACCTTAGTCAATCGGTGGACGGGATTCTCACCCGTCTTTCGCTACTCACACCGGCATTCTCACTTC < 2:2505534/88‑1 AGAGCGGACGAGCCTTCCTCTGGAAACCTTAGTCAATCGGTGGACGGGATTCTCACCCGTCTTTCGCTACTCACACCGGCATTCTCACTTC > 2:2326355/1‑91 AGAGCGGACGAGCCTTCCTCTGGAAACCTTAGTCAATCGGTGGACGGGATTCTCACCCGTCTTTCGCTACTCACACCGGCATTCTCACTTC > 1:5682525/1‑91 AGAGCGGACGAGCCTTCCTCTGGAAACCTTAGTCAATCGGTGGACGGGATTCTCACCCGTCTTTCGCTACTCACACCGGCATTCTCACTTC < 1:5034778/91‑1 AGAGCGGACGAGCCTTCCTCTGGAAACCTTAGTCAATCGGTGGACGGGATTCTCACCCGTCTTTCGCTACTCACACCGGCATTCTCACTTC < 1:4939243/91‑1 AGAGCGGACGAGCCTTCCTCTGGAAACCTTAGTCAATCGGTGGACGGGATTCTCACCCGTCTTTCGCTACTCACACCGGCATTCTCACTTC > 2:6017145/1‑91 AGAGCGGACGAGCCTTCCTCTGGAAACCTTAGTCAATCGGTGGACGGGATTCTCACCCGTCTTTCGCTACTCACACCGGCATTCTCACTTC < 1:3253600/91‑1 AGAGCGGACGAGCCTTCCTCTGGAAACCTTAGTCAATCGGTGGACGGGATTCTCACCCGTCTTTCGCTACTCACACCGGCATTCTCACTTC > 1:2606585/1‑91 AGAGCGGACGAGCCTTCCTCTGGAAACCTTAGTCAATCGGTGGACGGGATTCTCACCCGTCTTTCGCTACTCACACCGGCATTCTCACTTC > 1:1338528/1‑91 AGAGCGGACGAGCCTTCCTCTGGAAACCTTAGTCAATCGGTGGACGGGATTCTCACCCGTCTTTCGCTACTCACACCGGCATTCTCACTTC > 1:23803/1‑91 AGAGCGGACGAGCCTTCCTCTGGAAACCTTAGTCAATCGGTGGACGGGATTCTCACCCGTCTTTCGCTACTCACACCGGCATTCTCACTTC < 2:2138491/91‑1 AGAGCGGACGAGCCTTCCTCTGGAAACCTTAGTCAATCGGTGGACGGGATTCTCACCCGTCTTTCGCTACTCACACCGGCATTCTCACTTC > 1:110845/1‑91 AGAGCGGACGAGCCTTCCTCTGGAAACCTTAGTCAATCGGTGGACGGGATTCTCACCCGCCTTTCGCTACTCACACCGGCATTCTCACTTC < 1:6821336/91‑1 AGAGCGGACGAGCCGTCCTCTGGAAACCTTAGTCAATCGGTGGACGGGATTCTCACCCGTCTTTCGCTACTCACACCGGCATTCTCACTTC < 1:6947652/91‑1 GAGCGGACGAGCCTTCCTCTGGAAACCTTAGTCAATCGGTGGACGGGATTCTCACCCGTCTTTCGCTACTCACCCCGGCATTCACCCTTCc > 2:6674835/1‑90 GAGCGGACGAGCCTTCCTCTGGAAACCTTAGTCAATCGGTGGACGGGATTCTCACCCGTCTTTCGCTACTCACACCGGCATTCTCACTTCT > 1:4517844/1‑91 GAGCGGACGAGCCTTCCTCTGGAAACCTTAGTCAATCGGTGGACGGGATTCTCACCCGTCTTTCGCTACTCACACCGGCATTCTCACTTCT > 1:4761069/1‑91 GAGCGGACGAGCCTTCCTCTGGAAACCTTAGTCAATCGGTGGACGGGATTCTCACCCGTCTTTCGCTACTCACACCGGCATTCTCACTTCT < 1:4811250/91‑1 GAGCGGACGAGCCTTCCTCTGGAAACCTTAGTCAATCGGTGGACGGGATTCTCACCCGTCTTTCGCTACTCACACCGGCATTCTCACTTCT < 2:5983814/91‑1 GAGCGGACGAGCCTTCCTCTGGAAACCTTAGTCAATCGGTGGACGGGATTCTCACCCGTCTTTCGCTACTCACACCGGCATTCTCACTTCT > 2:2772292/1‑91 GAGCGGACGAGCCTTCCTCTGGAAACCTTAGTCAATCGGTGGACGGGATTCTCACCCGTCTTTCGCTACTCACACCGGCATTCTCACTTCT > 1:785344/1‑91 GAGCGGACGAGCCTTCCTCTGGAAACCTTAGTCAATCGGTGGACGGGATTCTCACCCGTCTTTCGCTACTCACACCGGCATTCTCACTTCT > 1:729907/1‑91 GAGCGGACGAGCCTTCCTCTGGAAACCTTAGTCAATCGGTGGACGGGATTCTCACCCGTCTTTCGCTACTCACACCGGCATTCTCACTTCT > 2:4215541/1‑91 gGCGGACGAGCCTTCCTCTGGAAACCTTAGTCAATCGGTGGACGGGATTCTCACCCGTCTTTCGCTACTCACACCGGCATTCTCACTTCTA < 2:3520020/90‑1 AGCGGACGAGCCTTCCTCTGGAAACCTTCGTCAATCGGTGGACGGGATTCTCACCCGTCTTTCGCTACTCACACCGGCATTCTCACTTCTA < 1:618097/91‑1 AGCGGACGAGCCTTCCTCTGGAAACCTTAGTCAATCGGTGGACGGGATTCTCACCCGTCTTTCGCTACTCACACCGGCATTCTCACTTCTA < 1:2057232/91‑1 AGCGGACGAGCCTTCCTCTGGAAACCTTAGTCAATCGGTGGACGGGATTCTCACCCGTCTTTCGCTACTCACACCGGCATTCTCACTTCTA < 1:358991/91‑1 AGCGGACGAGCCTTCCTCTGGAAACCTTAGTCAATCGGTGGACGGGATTCTCACCCGTCTTTCGCTACTCACACCGGCATTCTCACTTCTA < 1:6984701/91‑1 AGCGGACGAGCCTTCCTCTGGAAACCTTAGTCAATCGGTGGACGGGATTCTCACCCGTCTTTCGCTACTCACACCGGCATTCTCACTTCTA > 2:4428056/1‑91 AGCGGACGAGCCTTCCTCTGGAAACCTTAGTCAATCGGTGGACGGGATTCTCACCCGTCTTTCGCTACTCACACCGGCATTCTCACTTCTA < 1:1668754/91‑1 GCGGACGAGCCTTCCTCTGGAAACCTTAGTCAATCGGTGGCCGGGACTCTCCCCCGCCTTTCGCTCCCCACACCGGCATTCTCCCTTCTAA > 2:5621380/1‑91 GCGGACGAGCCTTCCTCTGGAAACCTTAGTCAATCGGTGGACGGGATTCTCACCCGTCTTTCGCTACTCACACCGGCATTCTCACTTCTAA > 2:4500587/1‑91 GCGGACGAGCCTTCCTCTGGAAACCTTAGTCAATCGGTGGACGGGATTCTCACCCGTCTTTCGCTACTCACACCGGCATTCTCACTTCTAA > 1:1036970/1‑91 GCGGACGAGCCTTCCTCTGGAAACCTTAGTCAATCGGTGGACGGGATTCTCACCCGTCTTTCGCTACTCACACCGGCATTCTCACTTCTAA > 2:100512/1‑91 GCGGACGAGCCTTCCTCTGGAAACCTTAGTCAATCGGTGGACGGGATTCTCACCCGTCTTTCGCTACTCACACCGGCATTCTCACTTCTAA < 1:4111490/91‑1 GCGGACGAGCCTTCCTCTGGAAACCTTAGTCAATCGGTGGACGGGATTCTCACCCGTCTTTCGCTACTCACACCGGCATTCTCACTTCTAA > 1:5543323/1‑91 GCGGACGAGCCTTCCTCTGGAAACCTTAGTCAATCGGTGGACGGGATTCTCACCCGTCTTTCGCTACTCACACCGGCATTCTCACTTCTAA > 2:1779922/1‑91 GCGGACGAGCCTTCCTCTGGAAACCTTAGTCAATCGGTGGACGGGATTCTCACCCGTCTTTCGCTACTCACACCGGCATTCTCACTTCTAA > 1:5878284/1‑91 GCGGACGAGCCTTCCTCTGGAAACCTTAGTCAATCGGTGGACGGGATTCTCACCCGTCTTTCGCTACTCACACCGGCATTCTCACTTCTAA < 2:5218617/91‑1 GTAAGGACATGTGGAGCGCTTAGAAGTGAGAATGCCGGTGTGAGTAGCGAAAGACGGGTGAGAATCCCGTCCACCGATTGACTAAGGTTTCCAGAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/515964‑516059‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccagagCGGACGAGCCTTCCTCTGGAAACCTTAGTCAATCGGTGGACGGGATTCTCACCCGTCTTTCGCTACTCACACCGGCATTCTCACTTCTAA < USA300TCH1516_ALE/516072‑515983 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |