| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 2751374 | 349 (0.980) | 10 (0.030) | 6/146 | NT | 3.0% | intergenic (‑222/+39) | betA/gbsA | Oxygen‑dependent choline dehydrogenase/Betaine aldehyde dehydrogenase |
| ? | USA300TCH1516_ALE | = 2751393 | 333 (1.020) | intergenic (‑241/+20) | betA/gbsA | Oxygen‑dependent choline dehydrogenase/Betaine aldehyde dehydrogenase | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
ATTGTTACTAACAGTAATGAAATAATCTATGATTCATTTTGCGTTTAGTCCAAATTATCAATCAACATTTCGCCACTTATACAAAACAAAGTGAGTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/2751278‑2751374‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtgagtgCCATTGTAAGAACACAAGACACTCACTTTGTTTTGTATAAGTGGCGAAATGTTGATTGATAATTTGGACTAAACGCAAAATGAATCATAG < USA300TCH1516_ALE/2751393‑2751304 ATTGTTACTAACAGTAATGAAATAATCTATGATTCATTTTGCGTTTAGTCCAAATTATCAATCAACATTTCGCCACTTATACAAAACAAAG > 2:672880/1‑91ATTGTTACTAACAGTAATGAAATAATCTATGATTCATTTTGCGTTTAGTCCAAATTATCAATCAACATTTCGCCACTTATACAAAACAAAG > 1:769238/1‑91 TTGTTACTAACAGTAATGAAATACTCTATGATTCATTTTGCGTTTAGAATAAATTATCAATCAACATTTCGCCACTTATACAAAACAAAGT > 2:5926088/1‑91 TTGTTACTAACAGTAATGAAATAATCTATGATTCATTTTGCGTTTAGTCCAAATTATCAATCAACATTTCGCCACTTATACAAAACAAAGT < 1:1572968/91‑1 TTGTTACTAACAGTAATGAAATAATCTATGATTCATTTTGCGTTTAGTCCAAATTATCAATCAACATTTCGCCACTTATACAAAACAAAGT < 2:805598/91‑1 TTGTTACTAACAGTAATGAAATAATCTATGATTCATTTTGCGTTTAGTCCAAATTATCAATCAACATTTCGCCACTTATACAAAACAAAGT > 2:1627280/1‑91 TTGTTACTAACAGTAATGAAATAATCTATGATTCATTTTGCGTTTAGTCCAAATTATCAATCAACATTTCGCCACTTATACAAAACAAAGT < 2:1475990/91‑1 TTGTTACTAACAGTAATGAAATAATCTATGATTCATTTTGCGTTTAGTCCAAATTATCAATCAACATTTCGCCACTTATACAAAACAAAGT < 2:1239186/91‑1 TTGTTACTAACAGTAATGAAATAATCTATGATTCATTTTGCGTTTAGTCCAAATTATCAATCAACATTTCGCCACTTATACAAAACAAAGT < 1:4102585/91‑1 TTGTTACTAACAGTAATGAAATAATCTATGATTCATTTTGCGTTTAGTCCAAATTATCAATCAACATTTCGCCACTTATACAAAACAAAGT < 1:2958661/91‑1 TTGTTACTAACAGTAATGAAATAATCTATGATTCATTTTGCGTTTAGTCCAAATTATCAATCAACATTTCGCCACTTATACAAAACAAAGT < 1:2836901/91‑1 TTGTTACTAACAGTAATGAAATAATCTATGATTCATTTTGCGTTTAGTCCAAATTATCAATCAACATTTCGCCACTTATACAAAACAAAGT > 1:2508897/1‑91 TTGTTACTAACAGTAATGAAATAATCTATGATTCATTTTGCGTTTAGTCCAAATTATCAATCAACATTTCGCCACTTATACAAAACAAAGT > 1:2508867/1‑91 TGTTACTAACAGTAATGAAATAATCTATGATTCATTTTGCGTTTAGTCCAAATTATCAATCAACATTTCGCCACTTATACAAAACAAAGat > 2:6279389/1‑89 TGTTACTAACAGTAATGAAATAATCTATGATTCATTTTGCGTTTAGTCCAAATTATCAATCAACATTTCGCCACTTATACAAAACAAAGag > 2:5539319/1‑89 TGTTACTAACAGTAATGAAATAATCTATGATTCATTTTGCGTTTAGTCCAAATTATCAATCAACATTTCGCCACTTATACAAAACAAAGTG > 1:1233033/1‑91 TGTTACTAACAGTAATGAAATAATCTATGATTCATTTTGCGTTTAGTCCAAATTATCAATCAACATTTCGCCACTTATACAAAACAAAGTG > 1:6548556/1‑91 TGTTACTAACAGTAATGAAATAATCTATGATTCATTTTGCGTTTAGTCCAAATTATCAATCAACATTTCGCCACTTATACAAAACAAAGTG > 2:1992443/1‑91 TGTTACTAACAGTAATGAAATAATCTATGATTCATTTTGCGTTTAGTCCAAATTATCAATCAACATTTCGCCACTTATACAAAACAAAGTG > 1:4829196/1‑91 TGTTACTAACAGTAATGAAATAATCTATGATTCATTTTGCGTTTAGTCCAAATTATCAATCAACATTTCGCCACTTATACAAAACAAAGTG > 2:3230442/1‑91 TGTTACTAACAGTAATGAAATAATCTATGATTCATTTTGCGTTTAGTCCAAATTATCAATCAACATTTCGCCACTTATACAAAACAAAGTG > 2:5217686/1‑91 GTTACTAACAGTAATGAAATAATCTATGATTCATTTTGCGTTTAGTCCAAATTATCAATCAACATTTCGCCACTTATACAAAACAAAGTGA > 1:6154312/1‑91 GTTACTAACAGTAATGAAATAATCTATGATTCATTTTGCGTTTAGTCCAAATTATCAATCAACATTTCGCCACTTATACAAAACAAAGTGA > 1:3352611/1‑91 GTTACTAACAGTAATGAAATAATCTATGATTCATTTTGCGTTTAGTCCAAATTATCAATCAACATTTCGCCACTTATACAAAACAAAGTGA < 1:213810/91‑1 GTTACTAACAGTAATGAAATAATCTATGATTCATTTTGCGTTTAGTCCAAATTATCAATCAACATTTCGCCACTTATACAAAACAAAGTGA > 1:5097945/1‑91 GTTACTAACAGTAATGAAATAATCTATGATTCATTTTGCGTTTAGTCCAAATTATCAATCAACATTTCGCCACTTATACAAAACAAAGTGA > 1:5407133/1‑91 TTACTAACAGTAATGAAATAATCTATGATTCATTTTGCGTTTAGTCCAAATTATCAATCAACATTTCGCCACTTATACAAAACAAAGTGAG < 2:1306398/91‑1 TTACTAACAGTAATGAAATAATCTATGATTCATTTTGCGTTTAGTCCAAATTATCAATCAACATTTCGCCACTTATACAAAACAAAGTGAG < 2:4441750/91‑1 TTACTAACAGTAATGAAATAATCTATGATTCATTTTGCGTTTAGTCCAAATTATCAATCAACATTTCGCCACTTATACAAAACAAAGTGAG > 2:1728173/1‑91 TACTAACAGTAATGAAATAATCTATGATTCATTTTGCGTTTAGTCCAAATTATCAATCAACATTTCGCCACTTATACAAAACAAAGTGAGT > 1:6674265/1‑91 TACTAACAGTAATGAAATAATCTATGATTCATTTTGCGTTTAGTCCAAATTATCAATCAACATTTCGCCACTTATACAAAACAAAGTGAGT > 1:6674982/1‑91 TACTAACAGTAATGAAATAATCTATGATTCATTTTGCGCTTAGTCCAAATTATCAATCAACATTTCGCCACTTATCCACAACAAAGTGAGT > 2:5468546/1‑91 ACTAACAGTAATGAAATAATCTATGATTCATTTTGCGTTTAGTCCAAATTATCAATCAACATTTCGCCACTTATACAAAACAAAGTGAGTG > 1:2473085/1‑91 ACTAACAGTAATGAAATAATCTATGATTCATTTTGCGTTTAGTCCAAATTATCAATCAACATTTCGCCACTTATACAAAACAAAGTGAGTG < 2:1055002/91‑1 ACTAACAGTAATGAAATAATCTATGATTCATTTTGCGTTTAGTCCAAATTATCAATCAACATTTCGCCACTTATACAAAACAAAGTGAGTG < 2:2200328/91‑1 ACTAACAGTAATGAAATAATCTATGATTCATTTTGCGTTTAGTCCAAATTATCAATCAACATTTCGCCACTTATACAAAACAAAGTGAGTG > 1:923121/1‑91 ACTAACAGTAATGAAATAATCTATGATTCATTTTGCGTTTAGTCCAAATTATCAATCAACATTTCGCCACTTATACAAAACAAAGTGAGTG < 1:2028125/91‑1 ACTAACAGTAATGAAATAATCTATGATTCATTTTGCGTTTAGTCCAAATTATCAATCAACATTTCGCCACTTATACAAAACAAAGTGAGTG < 1:2662662/91‑1 TGAAATAATCTATGATTCATTTTGCGTTTAGTCCAAATTATCAATCAACATTTCGCCACTTATACAAAACAAAGTGAGTGCCATTGTAAGA < 2:719421/91‑1 TGAAATAATCTATGATTCATTTTGCGTTTAGTCCAAATTATCAATCAACATTTCGCCACTTATACAAAACAAAGTGAGTGCCATTGTAAGA < 2:2402064/91‑1 ATCTATGATTCATTTTGCGTTTAGTCCAAATTATCAATCAACATTTCGCCACTTATACAAAACAAAGTGAGTGCCATTGTAAGAACACAAG < 1:4346905/91‑1 TCTATGATTCATTTTGCGTTTAGTCCAAATTATCAATCAACATTTCGCCACTTATACAAAACAAAGTGAGTGCCATTGTAAGAACACAAGA < 2:4125907/91‑1 ATGATTCATTTTGCGTTTAGTCCAAATTATCAATCAACATTTCGCCACTTATACAAAACAAAGTGAGTGCCATTGTAAGGACACAAGACAC < 2:2779439/91‑1 ATGATTCATTTTGCGTTTAGTCCAAATTATCAATCAACATTTCGCCACTTATACAAAACAAAGTGAGTGCCATTGTAAGGACACAAGACAC < 2:2778043/91‑1 ATGATTCATTTTGCGTTTAGTCCAAATTATCAATCAACATTTCGCCACTTATACAAAACAAAGTGAGTGCCATTGTAAGAACACAAGACAC < 1:615058/91‑1 ATGATTCATTTTGCGTTTAGTCCAAATTATCAATCAACATTTCGCCACTTATACAAAACAAAGTGAGTGCCATTGTAAGAACACAAGACAC < 2:1956206/91‑1 ATGATTCATTTTGCGTTTAGTCCAAATTATCAATCAACATTTCGCCACTTATACAAAACAAAGTGA < 2:2645983/66‑1 ATGATTCATTTTGCGTTTAGTCCAAATTATCAATCAACATTTCGCCACTTATACAAAACAAAGTGA > 1:2645983/1‑66 GATTCATTTTGCGTTTAGTCCAAATTATCAATCAACATTTCGCCACTTATACAAAACAAAGTGAGTGCCATTGTAAGAACACAAGACACTC < 1:4406019/91‑1 TTCATTTTGCGTTTAGTCCAAATTATCAATCAACATTTCGCCACTTATACAAAACAAAGTGAGTGCCATTGTAAGAACACAAGACACTCAC < 2:3932803/91‑1 GTGAGTGCCATTGTAAGAACACAAGACACTCACTTTGTTTTGTATAAGTGGCGAAATGTTGATTGATAATTTGGACTAAACGCAAAATGAA < 1:6109140/91‑1 GTGAGTGCCATTGTAAGAACACAAGACACTCACTTTGTTTTGTATAAGTGGCGAAATGTTGATTGATAATTTGGACTAAACGCAAAATGAA > 2:1975109/1‑91 GTGAGTGCCATTGTAAGAACACAAGACACTCACTTTGTTTTGTATAAGTGGCGAAATGTTGATTGATAATTTGGACTAAACGCAAAATGAA > 2:3039916/1‑91 GTGAGTGCCATTGTAAGAACACAAGACACTCACTTTGTTTTGTATAAGTGGCGAAATGTTGATTGATAATTTGGACTAAACGCAAAATGAA > 2:3039915/1‑91 TGAGTGCCATTGTAAGAACACAAGACACTCACTTTGTTTTGTATAAGTGGCGAAATGTTGATTGATAATTTGGACTAAACGCAAAATGAAT < 2:1391097/91‑1 TGAGTGCCATGGTAAGAACACAAGACACTCACTTTGTTTTGTATAAGTGGCGAAATGATGATTGATAATTTGGACTAAACGCAAAATGAAT < 1:6976062/91‑1 GAGTGCCATTGTAAGAACACAAGACACTCACTTTGTTTTGTATAAGTGGCGAAATGTTGATTGATAATTTGGACTAAACGCAAAATGAATC > 1:4564999/1‑91 GAGTGCCATTGTAAGAACACAAGACACTCACTTTGTTTTGTATAAGTGGCGAAATGTTGATTGATAATTTGGACTAAACGCAAAATGAATC < 1:6335581/91‑1 AGTGCCATTGTATGAACACAAGACACTCACTTTGTTTTGTATAAGTGGCGAAATGTTGATTGATAATTTGGACTAAACGCAAAATGAATCA < 2:4632905/91‑1 AGTGCCATTGTAAGAACACAAGACACTCACTTTGTTTTGTATAAGTGGCGAAATGTTGATTGATAATTTGGACTAAACGCAAAATGAATCA < 1:4886471/91‑1 AGTGCCATTGTAAGAACACAAGACACTCACTTTGTTTTGTATAAGTGGCGAAATGTTGATTGATAATTTGGACTAAACGCAAAATGAATCA > 2:3368775/1‑91 AGTGCCATTGTAAGAACACAAGACACTCACTTTGTTTTGTATAAGTGGCGAAATGTTGATTGATAATTTGGACTAAACGCAAAATGAATCA > 2:3585372/1‑91 AGTGCCATTGTAAGAACACAAGACACTCACTTTGTTTTGTATAAGTGGCGAAATGTTGATTGATAATTTGGACTAAACGCAAAATGAATCA > 2:2788255/1‑91 AGTGCCATTGTAAGAACACAAGACACTCACTTTGTTTTGTATAAGTGGCGAAATGTTGATTGATAATTTGGACTAAACGCAAAATGAATCA < 2:2660725/91‑1 AGTGCCATTGTAAGAACACAAGACACTCACTTTGTTTTGTATAAGTGGCGAAATGTTGATTGATAATTTGGACTAAACGCAAAATGAATCA > 1:3300157/1‑91 ggGCCATTGTAATAACACAAGACACTCACTTTGTTTTGTATAAGTGGCGAAATGTTGATTGATAATTTGGACTAAACGCAAAATGAATCAT < 2:3592614/89‑1 GTGCCATTGTAAGAACACAAGACACTCACTTTGTTTTGTATAAGTGGCGAAATGTTGATTGATAATTTGGACTAAACGCAAAATGAATCAT > 1:2664889/1‑91 GTGCCATTGTAAGAACACAAGACACTCACTTTGTTTTGTATAAGTGGCGAAATGTTGATTGATAATTTGGACTAAACGCAAAATGAATCAT > 2:4926348/1‑91 GTGCCATTGTAAGAACACAAGACACTCACTTTGTTTTGTATAAGTGGCGAAATGTTGATTGATAATTTGGACTAAACGCAAAATGAATCAT < 1:3300782/91‑1 GTGCCATTGTAAGAACACAAGACACTCACTTTGTTTTGTATAAGTGGCGAAATGTTGATTGATAATTTGGACTAAACGCAAAATGAATCAT > 2:3909393/1‑91 GTGCCATTGTAAGAACACAAGACACTCACTTTGTTTTGTATAAGTGGCGAAATGTTGATTGATAATTTGGACTAAACGCAAAATGAATCAT < 2:6867999/91‑1 GTGCCATTGTAAGAACACAAGACACTCACTTTGTTTTGTATAAGTGGCGAAATGTTGATTGATAATTTGGACTAAACGCAAAATGAATCAT > 2:3393064/1‑91 GTGCCATTGTAAGAACACAAGACACTCACTTTGTTTTGTATAAGTGGCGAAATGTTGATTGATAATTTGGACTAAACGCAAAATGAATCAT > 2:3392420/1‑91 GTGCCATTGTAAGAACACAAGACACTCACTTTGTTTTGTATAAGTGGCGAAATGTTGATTGATAATTTGGACTAAACGCAAAATGAATCAT < 1:6487930/91‑1 GTGCCATTGTAAGAACACAAGACACTCACTTTGTTTTGTATAAGTGGCGAAATGTTGATTGATAATTTGGACTAAACGCAAAATGAATCAT > 1:5938626/1‑91 GTGCCATTGTAAGAACACAAGACACTCACTTTGTTTTGTATAAGTGGCGAAATGTTGATTGATAATTTGGACTAAACGCAAAATGAATCAT > 1:87185/1‑91 TGCCATTGTAAGAACACAAGACACTCACTTTGTTTTGTATAAGTGGCGAAATGTTGATTGATAATTTGGACTAAACGCAAAATGAATCATA < 1:2441739/91‑1 TGCCATTGTAAGAACACAAGACACTCACTTTGTTTTGTATAAGTGGCGAAATGCTGATTGATAATTTGGACTAAACGCAAAATGAATCATA < 1:5360218/91‑1 TGCCATTGTAAGAACACAAGACACTCACTTTGTCTTGTATAAGTGGCGAAATGTTGATTGATAATTTGGACTAAACGCAAGATGAATCATA > 1:6957665/1‑91 GCCATTGTAAGAACACAAGACACTCACTTTGTTTTGTATAAGTGGCGAAATGTTGATTGATAATTTGGACTAAACGCAAAATGAATCATAG > 1:680139/1‑91 GCCATTGTAAGAACACAAGACACTCACTTTGTTTTGTATAAGTGGCGAAATGTTGATTGATAATTTGGACTAAACGCAAAATGAATCATAG < 2:3409987/91‑1 GCCATTGTAAGAACACAAGACACTCACTTTGTTTTGTATAAGTGGCGAAATGTTGATTGATAATTTGGACTAAACGCAAAATGAATCATAG > 2:759722/1‑91 GCCATTGTAAGAACACAAGACACTCACTTTGTTTTGTATAAGTGGCGAAATGTTGATTGATAATTTGGACTAAACGCAAAATGAATCATAG < 2:6914445/91‑1 GCCATTGTAAGAACACAAGACACTCACTTTGTTTTGTATAAGTGGCGAAATGTTGATTGATAATTTGGACTAAACGCAAAATGAATCATAG < 1:3819462/91‑1 GCCATTGTAAGAACACAAGACACTCACTTTGTTTTGTATAAGTGGCGAAATGTTGATTGATAATTTGGACTAAACGCAAAATGAATCATAG > 1:5691224/1‑91 GCCATTGTAAGAACACAAGACACTCACTTTGTTTTGTATAAGTGGCGAAATGTTGATTGATAATTTGGACTAAACGCAAAATGAATCATAG < 2:1624968/91‑1 GCCATTGTAAGAACACAAGACACTCACTTTGTTTTGTATAAGTGGCGAAATGTTGATTGATAATTTGGACTAAACGCAAAATGAATCATAG > 1:4432424/1‑91 GCCATTGTAAGAACACAAGACACTCACTTTGTTTTGTATAAGTGGCGAAATGTTGATTGATAATTTGGACTAAACGCAAAATGAATCATAG > 1:4432133/1‑91 ATTGTTACTAACAGTAATGAAATAATCTATGATTCATTTTGCGTTTAGTCCAAATTATCAATCAACATTTCGCCACTTATACAAAACAAAGTGAGTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/2751278‑2751374‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtgagtgCCATTGTAAGAACACAAGACACTCACTTTGTTTTGTATAAGTGGCGAAATGTTGATTGATAATTTGGACTAAACGCAAAATGAATCATAG < USA300TCH1516_ALE/2751393‑2751304 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |