| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 1454029 | 60 (0.710) | 3 (0.040) | 3/236 | NT | 4.9% | intergenic (‑108/+176) | odhA/arlS | 2‑oxoglutarate dehydrogenase E1 component/Signal transduction histidine‑protein kinase ArlS |
| ? | USA300TCH1516_ALE | = 1454035 | 62 (0.810) | intergenic (‑114/+170) | odhA/arlS | 2‑oxoglutarate dehydrogenase E1 component/Signal transduction histidine‑protein kinase ArlS | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
TTACAGGAGCCTCTGAAACTTCTTTTCTTTCGTTAGTCATTTTACACCCTCCACAAAAATGTTGAAACGCTTACAATGTAATAATATCACTATTTAGTTATTTGTTAAAGTAGATTTACCTATTTATCTGCTAAAAAGAAGAATCAAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/1453882‑1454029‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agaagaatcaacGCTTTTGTTGATTCTTCTTTTTAGCAGATAAATAGGTAAATCTACTTTAACAAATAACTAAATAGTGATATTATTACATTGTAAGCGTTTCAACATTTTTGTGGAGGGTGTAAAATGACTAACGAAAGAAAAGAAGTTT < USA300TCH1516_ALE/1454035‑1453897 TTACAGGAGCCTCTGAAACTTCTTTTCTTTCGTTAGTCATTTTACACCCTCAACAAAAATGTTGAAACGCTTACAATGTAATAATATCACTATATAGTTATTTGTTAAAGTAGATTTCCCTATTTATCTTCTAAAAATAAa > 2:229343/1‑140 ACAGGAGCCTCTGAAACTTCTTTTCTTTCGTTAGTCATTTTACACCCTCCACAAAAATGTTGAAACGCTTACAATGTAATAATATCACTATTTAGTTATTTGTTAAAGTAGATTTACCTATTTATCTGCTAAAAAGAAGAA < 1:1011573/141‑1 gtAGCCTCTGAAACTTCTTTTCTTGCGTTGGTCATTTTACACCCTCCACAAAAATGTTGAAACGCTTACAATGTAATAATATCACTATTTAGTTATTTGTTAAAGTAGATTTACCTATTTATCTGCTAAAAAGAAGAATCA < 2:487604/139‑1 GAGCCTCTGAAACTTCTTTTCTTTCGTTAGTCATTTTACACCCTCCACAAAAATGTTGAAACGCTTACAATGTAATAATATCACTATTTAGTTATTTGTTAAAGTAGATTTACCTATTTATCTGCTAAAAAGAAGAATCAA < 2:47646/141‑1 GAGCCTCTGAAACTTCTTTTCTTTCGTTAGTCATTTTACACCCTCCACAAAAATGTTGAAACGCTTACAATGTAATAATATCACTATTTAGTTATTTGTTAAAGTAGATTTACCTATTTATCTGCTAAAAAGAAGAATCAA < 2:253592/141‑1 TTACACCCTCCACAAAAATGTTGAAACGCTTACAATGTAATAATATCACTATTTAGTTATTTGTTAAAGTAGATTTACCTATTTATCTACTAAAAAGAAGAATCAACGCTTTTATTCATTCTTCTTTTTCGCAGATAtcta > 2:949325/1‑137 AAATGTTGAAACGCTTACAATGTAATAATATCACTATTTAGTTATTTGTTAAAGTAGATTTACCTATTTATCTGCTACGAAGACGACTCAACAAAAGCGTTGATTCTTCTTTTTAGCAGATAAATAGGTAAATCTACTTTA > 1:783766/1‑141 TAATATCACTATTTAGTTATTTGTTAAAGTAGATTTACCTATTTATCTGCTAAAAAGAAGAATCAACAAAAGCGTTGATTCTTCTTTTTAGCAGATAAATAGGTAAATCTACTTTAACAAATCACTAAATAGTGCTATTcn > 1:949325/1‑139 AGAAGAATCAACGCTTTTGTTGATTCTTCTTTTTAGCAGATAAATAGGTAAATCTACTTTAACAAATAACTAAATAGTGATATTATTACATTGTAAGCGTTTCAACATTTTTGTGGAGGTTGTAAAATGACTAACGAAAca > 2:1026311/1‑139 AGAAGAATCAACGCTTTTGTTGATTCTTCTTTTTAGCAGATAAATAGGTAAATCTACTTTAACAAATAACTAAATAGTGATATTATTACATTGTAAGCGTTTCAACATTTTTGTGGAGGTTGTAAAATGACTAACGAAAGA > 2:743319/1‑141 AGAAGAATCAACGCTTTTGTTGATTCTTCTTTTTAGCAGATAAATAGGTAAATCTACTTTAACAAATAACTAAATAGTGATATTATTACATTGTAAGCGTTTCAACATTTTTGTGGAGGGTGTAAAATGACTAACGAAAGA > 1:345498/1‑141 AGAAGAATCAACGCTTTTGTTGATTCTTCTTTTTAGCAGATAAATAGGTAAATCTACTTTAACAAATAACTAAATAGTGATATTATTACATTGTAAGCGTTTCAACATTTTTGTGGAGGGTGTAAAATGACTAACGAAAGA < 1:150077/141‑1 AGAAGAATCAACGCTTTTGTTGATTCTTCTTTTTAGCAGATAAATAGGTAAATCTACTTTAACAAATAACTAAATAGTGATATTATTACATTGTAAACGATTCAACATATTTGTGGAGGGTGTAAAATGACAAACGAAAGA > 2:203111/1‑141 AGAATCAACGCTTTTGTTGATTCTTCTTTTTAGCAGATAAATAGGTAAATCTACTTTAACAAATAACTAAATAGTGATATTATTACATTGTAAGCGTTTCAACATTTTTGTGGAGGGTGTAAAATGACTAACGAAAGAAAA < 1:249278/141‑1 AGAATCAACGCTTTTGTTGATTCTTCTTTTTAGCAGATAAATAGGTAAATCTACTTTAACAAATAACTAAATAGTGATATTATTACATTGTAAGCGTTTCAACATTTTTGTGGAGGGTGTAAAATGACTAACGAAAGAAAA < 1:1007584/141‑1 AATCAACGCTTTTGTTGATTCTTCTTTTTAGCAGATAAATAGGTAAATCTACTTTAACAAATTACTAAATAGACCCGTTCTTTCATTTTAAGCTTTTCAACATTTTTGTGGAGGGTGTAAAATGACTAACGAAAGAAAAGA > 2:221240/1‑141 AATCAACGCTTTTGTTGATTCTTCTTTTTAGCAGATAAATAGGTAAATCTACTTTAACAAATAACTAAATAGTGATATTATTACATTGTAAGCGTTTCAACATTTTTGTGGAGGGTGTAAAATGACTAACGAAAGAAAAGA < 1:255848/141‑1 AATCAACGCTTTTGTTGATTCTTCTTTTTAGCAGATAAATAGGTAAATCTACTTTAACAAATAACTAAATAGTGATATTATTACATTGTAAGCGTTTCAACATTTATGTGGAGGGTGTAAAATGACTAACGAAAGAAAAta > 2:585186/1‑139 TCAACGCTTTTGTTGATTCTTCTTTTTAGCAGATAAATAGGTAAATCTACTTTAACAAATAACTAAATAGTGATATTATTACATTGTAAGCGTTTCAACATTTTTGTGGAGGGTGTAAAATGACTAACGAAAGAAAAGAAG > 1:179937/1‑141 CAACGCTTTTGTTGATTCTTCTTTTTAGCAGATAAATAGGTAAATCTACTTTAACAAATAACTAAATAGTGATATTATTACATTGTAAGCGTTTCAACATTTTTGTGGAGGGTGTAAAATGACTAACGAAAGAAAAGAAGT > 1:69699/1‑141 ACGCTTTTGTTGATTCTTCTTTTTAGCAGATAAATAGGTAAATCTACTTTAACAAATAACTAAATAGTGATATTATTACATTGTAAGCGTTTCAACATTTTTGTGGAGGGTGTAAAATGACTAACGAAAGAAAAGAAGTTT > 1:790703/1‑141 TTACAGGAGCCTCTGAAACTTCTTTTCTTTCGTTAGTCATTTTACACCCTCCACAAAAATGTTGAAACGCTTACAATGTAATAATATCACTATTTAGTTATTTGTTAAAGTAGATTTACCTATTTATCTGCTAAAAAGAAGAATCAAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/1453882‑1454029‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agaagaatcaacGCTTTTGTTGATTCTTCTTTTTAGCAGATAAATAGGTAAATCTACTTTAACAAATAACTAAATAGTGATATTATTACATTGTAAGCGTTTCAACATTTTTGTGGAGGGTGTAAAATGACTAACGAAAGAAAAGAAGTTT < USA300TCH1516_ALE/1454035‑1453897 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |