New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	1533866 =	136 (1.050)	7 (0.060)	7/232	NT	5.7%	coding (207/576 nt)	USA300HOU_1400	hypothetical protein
	?	CP000730	1533900 =	108 (0.920)					coding (173/576 nt)	USA300HOU_1400	hypothetical protein

TCGATTTAAGTCGCGTATTGCAGTTTGGGTGCTTAACTATATAAAAGTGAATGAGGCGAAATTGGCAAACATTCATTTTGTAGATACAAAAATTAATCATCATGAAACATTAGAAATTGCAGAAGTGGGAAGTCACGCTTCTGCAATT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP000730/1534013‑1533866 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cttctgcaattTCTAATGTTTCATGATGATTAATTTTTGTATCTACAAAATGAATGTTTGCCAATTTCGCCTCATTCACTTTTATATAGTTAAGCACCCAAACTGCAATACGCGACTTAAATCGATATTGAAAAAGTAAATATTCAATAAA  >  CP000730/1533900‑1534039                                                                                                                                                                                                                                                                                                  ttttTTTAAGTCGCGTATTGCAGTTTGGGTGCTTAACTATATAAAAGTGAATGAGGCGAAATTGGCAAACATTCATTTTGTAGATACAAAAATTAATCATCATGAAACATTAGAAATTGCAGAAGTGGGAAGTCACGCTTC                                                                                                                                                     >  2:609303/5‑141  CGATTTAAGTCGCGTATTGCAGTTTGGGTGCTTAACTATATAAAAGTGAATGAGGCGAAATTGGCAAACATTCATTTTGTAGATACAAAAATTAATCATCATGAAACATTAGAAATTGCAGAAGTGGGAAGTCACGCTTCT                                                                                                                                                    <  1:1505612/141‑1  CGATTTAAGTCGCGTATTGCAGCTTGGGTGCTTAACTATATAAAAGTGAATGAGGCGAAATTGGCAAACATTCATTTTGTAGATACAAAAATTAATCATCATGAAACATTAGAAATTGCAGAAGTGGGAAGTCACGCTTCT                                                                                                                                                    >  1:346348/1‑141    ATTTAAGTCGCGTATTGCAGTTTGGGTGCTTAACTATATAAAAGTGAATGAGGCGAAATTGGTAAACATTCATTTTGTAGATACAAAAATTAATCATCATGAAACATTAGAAATTGCAGAAGTGGGAAGTCACGCTTCTGC                                                                                                                                                  <  2:276200/141‑1    ATTTAAGTCGCGTATTGCAGTTTGGGTGCTTAACTATATAAAAGTGAATGAGGCGAAATTGGCAAACATTCATTTTGTAGATACAAAAATTAATCATCATGAAACATTAGAAATTGCAGAAGTGGGAAGTCACGCTTCTGC                                                                                                                                                  <  1:1520298/141‑1      TTAAGTCGCGTATTGCAGTTTGGGTGCTTAACTATATAAAAGTGAATGAGGCGAAATTGGCAAACATTCATTTTGTAGATACAAAAATTAATCATCATGAAACATTAGAAATTGCAGAAGTGGGAAGTCACGCTTCTGCAA                                                                                                                                                <  1:1156524/141‑1         AGTCGCGTATTGCAGTTTGGGTGCTTAACTATATAAAAGTGAATGAGGCGAAATTGGCAAACATTCATTTTGTAGATACAAAAATTAATCATCATGAAACATTAGAAATTGCAGAAGTGGGAAGTCACGCTTATGCAATac                                                                                                                                             >  2:895761/1‑139                                     CTATATAAAAGTGAATGAGGCGAAATTGGCAAACATTCATTTTGTAGATACAAAAATTAATCATCATGAAACATTAGAAATTGCAGAAGTGGGACGTCACGCTTCTGC                                                                                                                                                  >  1:1263090/1‑108                                     CTATATAAAAGTGAATGAGGCGAAATTGGCAAACATTCATTTTGTAGATACAAAAATTAATCATCATGAAACATTAGAAATTGCAGAAGTGGGAAGTCACGCTTCTGC                                                                                                                                                  <  2:1263090/108‑1                                       ATATAAAAGTGAATGAGGCGAAATTGGCAAACATTCATTTTGTAGATACAAAAATTAATCATCATGAAACATTAGAAATTGCAGAAGCGTGACTTCCCACTTCTGCAATTTCTAATGTTTCATGATGATTAATTTTTGTAT                                                                                                               <  2:447119/141‑1                                                                    AACATTCATTTTGTAGATACAAAAATTAATCATCATGAAACATTAGAAATTGCAGAAGCGTGACTTCCCACTTCTGCAATTTCTAATGTTTCATGATGA                                                                                                                            <  2:951776/99‑1                                                                    AACATTCATTTTGTAGATACAAAAATTAATCATCATGAAACATTAGAAATTGCAGAAGCGTGACTTCCCACTTCTGCAATTTCTAATGTTTCATGATGA                                                                                                                            >  1:951776/1‑99                                                                                                                      TGCAGAAGTGGGAAGTCACGCTTCTGCAATTTCTAATGTTTCATGATGATTAATTTTTGTATCTACAAAATGAATGTTTGCCAATTTCGCCTCATTCACTTTTATATAGTTAAGCACCCAAACTGCAATACGCGACTTAAA                                >  1:1466294/1‑141                                                                                                                             GTGGGAAGTCACGCTTCTGCAATTTCTAATGTTTCATGATGATTAATTTTTGTATCTACAAAATGAATGTTTGCCAATTTCGCCTCATTCACTTTTATATAGTTAAGCACCCAAACTGCAATACGCGACTTAAATCGATAT                         >  2:960562/1‑141                                                                                                                              TGGGGAGTCACGCTTCTGCAATTTCTAATGTTTCATGATGATTAATTTTTGTATCTACAAAATGAATGTTTGCCAATTTCGCCTCATTCACTTTTATATAGTTAAGCACCCAAACTGCAATACGCGACTTAAATCGATATT                        >  2:320456/1‑141                                                                                                                               GGGAAGTCACGCTTCTGCAATTTCTAATGTTTCATGATGATTAATTTTTGTATCTACAAAATGAATGTTTGCCAATTTCGCCTCATTCACTTTTATATAGTTAAGCACCCAAACTGCAATACGCGACTTAAATCGATATTG                       >  2:79689/1‑141                                                                                                                                           TTCTGCAATTTCTAATGTTTCATGATGATTAATTTTTGTATCTACAAAATGAATGTTTGCCAATTTCGCCTCATTCACTTTTATATAGTTAAGCACCCAAACTGCAATACGCGACTTAAATCGATATTGAAAAAGTAAATA           >  1:1129601/1‑141                                                                                                                                             CTGCAATTTCTAATGTTTCATGATGATTAATTTTTGTATCTACAAAATGAATGTTTGCCAATTTCGCCTCATTCACTTTTATATAGTTAAGCACCCAAACTGCAATACGCGACTTAAATCGATATTGAACAAGTAAATATT         >  1:809840/1‑141                                                                                                                                             CTGCAATTTCTAATGTTTCATGATGATTAATTTTTGTATCTACAAAATGAATGTTTGCCAATTTCGCCTCATTCACTTTTATATAGTTAAGCACCCAAACTGCAATACGCGACTTAAATCGATATTGAAAAAGTAAATATT         >  2:1124103/1‑141                                                                                                                                             CTGCAATTTCTAATGTTTCATGATGATTAATTTTTGTATCTACAAAATGAATGTTTGCCAATTTCGCCTCATTCACTTTTATATAGTTAAGCACCCAAACTGCAATACGCGACTTAAATCGATATTGAAAAAGTAAATATT         >  2:78859/1‑141                                                                                                                                              TGCAATTTCTAATGTTTCATGATGATTAATTTTTGTATCTACAAAATGAATGTTTGCCAATTTCGCCTCATTCACTTTTATATAGTTAAGCACCCAAACTGCAATACGCGACTTAAATCGATATTGAAAAAGTAAATATTC        <  1:79689/141‑1                                                                                                                                              TGCAATTTCTAATGTTTCATGATGATTAATTTTTGTATCTACAAAATGAATGTTTGCCAATTTCGCCTCATTCACTTTTATATAGTTAAGCACCCAAACTGCAATACGCGACTTAAATCGATATTGAAAAAGTAAATATTC        >  1:1414222/1‑141                                                                                                                                              TGCAATTTCTAATGTTTCATGATGATTAATTTTTGTATCTACAAAATGAATGTTTGCCAATTTCGCCTCATTCACTTTTATATAGTTAAGCACCCAAACTGCAATACGCGACTTAAATCGATATTGAAAAAGTAAATATTC        >  1:588458/1‑141                                                                                                                                                CAATTTCTAATGTTTCATGATGATTAATTTTTGTATCTACAAAATGAATGTTTGCCAATTTCGCCTCATTCACTTTTATATAGTTAAGCACCCAAACTGCAATACGCGACTTAAATCGATATTGAAAAAGTAAATATTCAA      >  2:1027205/1‑141                                                                                                                                                CAATTTCTAATGTTTCATGATGATTAATTTTTGTATCTACAAAATGAATGTTTGCCAATTTCGCCTCATTCACTTTTATATAGTTAAGCACCCAAACTGCAATACGCGACTTAAATCGATATTGAAAAAGTAAATATTCAA      <  1:6980/141‑1                                                                                                                                                CAATTTCTAATGTTTCATGATGATTAATTTTTGTATCTACAAAATGAATGTTTGCCAATTTCGCCTCATTCACTTTTATATAGTTAAGCACCCAAACTGCAATACGCGACTTAAATCGATATTGAAAAAGTAAATATTCAA      <  1:284911/141‑1                                                                                                                                                 AATTTCTAATGTTTCATGATGATTAATTTTTGTATCTACAAAATGAATGTTTGCCAATTTCGCCTCATTCACTTTTATATAGTTAAGCACCCAAACTGCAATACGCGACTTAAATCGATATTGAAAAAGTAAATATTCAAT     <  1:1629226/141‑1                                                                                                                                                   TTTCTAATGTTTCATGATGATTAATTTTTGTATCTACAAAATGAATGTTTGCCAATTTCGCCTCATTCACTTTTATATAGTTAAGCACCCAAACTGCAATACGCGACTTAAATCGATATTGAAAAAGTAAATATTCAATAA   <  1:347637/141‑1                                                                                                                                                   TTTCTAATGTTTCATGATGATTAATTTTTGTATCTACAAAATGAATGTTTGCCAATTTCGCCTCATTCACTTTTATATAGTTAAGCACCCAAACTGCAATACGCGACTTAAATCGATATTGAAAAAGTAAATATTCAATAA   >  1:1614231/1‑141                                                                                                                                                    TTCTAATGTTTCATGATGATTAATTTTTGTATCTACAAAATGAATGTTTGCCAATTTCGCCTCATTCACTTTTATATAGTTAAGCACCCAAACTGCAATACGCGACTTAAATCGATATTGAAAAAGTAACTATTCAATAAA  >  2:946704/1‑141                                                                                                                                                                                                                                                                                                  TCGATTTAAGTCGCGTATTGCAGTTTGGGTGCTTAACTATATAAAAGTGAATGAGGCGAAATTGGCAAACATTCATTTTGTAGATACAAAAATTAATCATCATGAAACATTAGAAATTGCAGAAGTGGGAAGTCACGCTTCTGCAATT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP000730/1534013‑1533866 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cttctgcaattTCTAATGTTTCATGATGATTAATTTTTGTATCTACAAAATGAATGTTTGCCAATTTCGCCTCATTCACTTTTATATAGTTAAGCACCCAAACTGCAATACGCGACTTAAATCGATATTGAAAAAGTAAATATTCAATAAA  >  CP000730/1533900‑1534039

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.