| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP000730 | 1870532 = | 146 (1.130) | 8 (0.070) | 6/238 | NT | 5.6% | intergenic (‑10/‑325) | ytmP/USA300HOU_1740 | possible kanamycin kinase/hypothetical protein |
| ? | CP000730 | 1870584 = | 135 (1.120) | intergenic (‑62/‑273) | ytmP/USA300HOU_1740 | possible kanamycin kinase/hypothetical protein | |||||
ACATTACGATTTAAATTTAGTCGTGTAATGTAGGCATTGGTTGAGGATTTACAATAATTATCTGGACATAATATTTGTACCAGTATGGTGTTATAAATTAGAATATATGGCTCTTGAAAAACCTATTTCTAGAGCCAT‑T‑TTCTAATT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP000730/1870678‑1870532‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttctaattTATAACACCATACTGGTACAAATATTATGTCCAGATAATTATTGTAAATCCTCAACCAATGCCTACATTACACGACTAAATTTAAATCGTAATGTCTGTCATTGACACCATACATTCTATAGTCACTTACTTGACATATA > CP000730/1870584‑1870723 ACATTACGATTTAAATTTAGTCGTGTAATGTAGGCATTGGTTGAGGATTTACAATAATTATCTGGACATAATATTTGTACCAGTATGGTGTTATAAATTAGAATATATAGCTCTTGAAAAACCTAGTTCTAGAGCCAT‑T‑TT > 2:1296478/1‑141 CATTACGATTTAAATTTAGTCGTGTAATGTAGGCATTGGTTGAGGATTTACAATAATTATCTGGACATAATATTTGTACCAGTATGGTGTTATAAATTAGAATATATGGCTCTTGAAAAACCTATTTCTAGAGCCAT‑T‑TTC > 1:159052/1‑141 CATTACGATTTAAATTTAGTCGTGTAATGTAGGCATTGGTTGAGGATTTACAATAATTATCTGGACATAATATTTGTACCAGTATGGTGTTATAAATTAGAATATATGGCTCTTGAAAAACCTATTTCTAGAGCCAT‑T‑TTC < 1:1516214/141‑1 ATTACGATTTAAATTTAGTCGTGTAATGTAGGCATTGGTTGAGGATTTACAATAATTATCTGGACATAATATTTGTACCAGTATGGTGTTATAAATTAGAATATATGGCTCTTGAAAAACCTATTTCTAGAGCCAT‑T‑TTCT > 1:1578127/1‑141 TTACGATTTAAATTTAGTCGTGTAATGTAGGCATTGGTTGAGGATTTACAATAATTATCTGGACATAATATTTGTACCAGTATGGTGTTATAAATTAGAATATATGGCTCTTGAAAAACCTATTTCTAGAGCCAT‑T‑TTCTA < 1:1434626/141‑1 ACGATTTAAATTTAGTCGTGTAATGTAGGCATTGGTTGAGGATTTACAATAATTATCTGGACATAATATTTGTACCAGTATGGTGTTATAAATTAGAATATATGGCTCTTGAAAAACCTATTTCTAGAGCCAT‑T‑TTCTAAT < 2:503579/141‑1 CGATTTAAATTTAGTCGTGTAATGTAGGCATTGGTTGAGGATTTACAATAATTATCTGGACATAATATTTGTACCAGTATGGTGTTATAAATTAGAATATATGGCTCTTGAAAAACCTATTTCTAGAGCCAT‑T‑TTCTAATT < 1:270852/141‑1 CGATTTAAATTTAGTCGTGTAATGTAGGCATTGGTTGAGGATTTACAATAATTATCTGGACATAATATTTGTACCAGTATGGTGTTATAAATTAGAATATATGGCTCTTGAAAAACCTATTTCTAGAGCCAT‑T‑TTCTAATT > 1:720727/1‑141 GTACCAGTATGGTGTTATAAATTAGAATATATGGCTCTTGAAAAACCTATTTCTAGAGCCAT‑T‑TTCTAATTTATAACACCATACTGGTAC < 2:1482111/90‑1 GTACCAGTATGGTGTTATAAATTAGAATATATGGCTCTTGAAAAACCTATTTCTAGAGCCAT‑T‑TTCTAATTTATAACACCATACTGGTAC > 1:1482111/1‑90 ataaaggtacatATATATGGCTCTTGAAAAACCTATTTCTAGAGCCATATATTCTAATTTATAACACCATACTGGTACAAATATTATGTCCAGATAATTATTGTAAATCCTCAACCAATGCCTACATTACACGACTAAATT < 1:342063/129‑1 TTAGAATATATGGCTCTTGAAAAACCTATTTCTAGAGCCAT‑T‑TTCTAATTTATAACACCATACTGGTACAAATATTATGTCCAGATAATTATTGTAAATCCTCAACCAATGCCTACATTACACGACTAAATTTAAATCGTA > 2:581233/1‑141 ATGGCTCTTGAAAAACCTATTTCTAGAGCCATATATTCTAATTTATAACACCATACTGGTACAAATATTATGTCCAGATAATTATTGTAAATCCTCAACCAATGCCTACATTACACGACTAAATTTAAATCGT > 2:799667/1‑133 ATGGCTCTTGAAAAACCTATTTCTAGAGCCATATATTCTAATTTATAACACCATACTGGTACAAATATTATGTCCAGATAATTATTGTAAATCCTCAACCAATGCCTACATTACACGACTAAATTTAAATCGT < 1:799667/133‑1 GCTCTTGAAAAACCTATTTCTAGAGCCATATATTCTAATTTATAACACCATACTGGTACAAATATTATGTCCAGATAATTATTGTAAATCCTCAACCAATGCCTACATTACACGACTAAATTTAAATCGTAATGTCTGTCA > 2:788449/1‑141 GCTCTTGAAAAACCTATTTCTAGAGCCAT‑T‑TTCTAATTTATAACACCATACTGGTACAAATATTATGTCCAGATAATTATTGTAAATCCTCAACCAATGCCTACATTACACGACTAAATTTAAATCGTAATGTCTGTCATT > 2:839341/1‑141 TTCTAATTTATAACACCATACTGGTACAAATATTATGTCCAGATAATTATTGTAAATCCTCAACCAATGCCTACATTACACGACTAAATTTAAATCGTAATGTCTGTCATTGACACCATACATTCTATAGTCACTTACTTG < 1:983132/141‑1 CTAATTTATAACACCATACTGGTACAAATATTATGTCCAGATAATTATTTGAAATCCGCAACCAATGCCTACATTACACGACTAAATTTAAATCGTAATGTCTGTCATTGACACCATACATTCTATAGGCACTTACTTGAC < 1:72644/141‑1 CTAATTTATAACACCATACTGGTACAAATATTATGTCCAGATAATTATTGTAAATCCTCAACCAATGCCTACATTACACGACTAAATTTAAATCGTAATGTCTGTCATTGACACCATACATTCTATAGTCACT > 2:1573972/1‑133 CTAATTTATAACACCATACTGGTACAAATATTATGTCCAGATAATTATTGTAAATCCTCAACCAATGCCTACATTACACGACTAAATTTAAATCGTAATGTCTGTCATTGACACCATACATTCTATAGTCACT < 1:1573972/133‑1 AATTTATAACACCATACTGGTACAAATATTATGTCCAGATAATTATTGTAAATCCTCAACCAATGCCTACATTACACGACTAAATTTAAATCGTAATGACTGTCATTGACACCATACATTCTATAGTCACTTACTTGACAT > 1:794884/1‑141 TTTATAACACCATACTGGTACAAATATTATGTCCAGATAATTATTGTAAATCCTCAACCAATGCCTACATTACACGACTAAATTTAAATCGTAATGTCTGTCATTGACACCATACATTCTATAGTCACTTACTTGACATAT < 1:1584663/141‑1 TTTATAACACCATACTGGTACAAATATTATGTCCAGATAATTATTGTAAATCCTCAACCAATGCCTACATTACACGACTAAATTTAAATCGTAATGTCTGTCATTGACACCATACATTCTATAGTCACTTACTTGACATAT < 1:222191/141‑1 TTATAACACCATACTGGTACAAATATTATGTCCAGATAATTATTGTAAATCCTCAACCAATGCCTACATTACACGACTAAATTTAAATCGTAATGTCTGTCATTGACACCATACATTCTATAGTCACTTACTTGACATATA > 1:188547/1‑141 ACATTACGATTTAAATTTAGTCGTGTAATGTAGGCATTGGTTGAGGATTTACAATAATTATCTGGACATAATATTTGTACCAGTATGGTGTTATAAATTAGAATATATGGCTCTTGAAAAACCTATTTCTAGAGCCAT‑T‑TTCTAATT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP000730/1870678‑1870532‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttctaattTATAACACCATACTGGTACAAATATTATGTCCAGATAATTATTGTAAATCCTCAACCAATGCCTACATTACACGACTAAATTTAAATCGTAATGTCTGTCATTGACACCATACATTCTATAGTCACTTACTTGACATATA > CP000730/1870584‑1870723 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |