| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP000730 | 2716742 = | 119 (0.920) | 10 (0.080) | 10/232 | NT | 7.9% | intergenic (+50/+100) | ynzC/USA300HOU_2569 | hypothetical protein/possible lactoylglutatione lyase |
| ? | CP000730 | 2716816 = | 123 (1.040) | intergenic (+124/+26) | ynzC/USA300HOU_2569 | hypothetical protein/possible lactoylglutatione lyase | |||||
GCAATGTTCAAAGATCTTGATGGACACCATTTTAATTTTTTGGTCTGCTAAAATGAAATTCTCAAAAGAATAAATAAAAAGCCCATACAGAGATGAAGCGTAATGTGCACCATGGTGCGACACATTAGTGTCTTCAATCAGTATGGGCTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP000730/2716892‑2716742‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtatgggctttTTATTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTAAAATGGTGTCCATCAAGATCTTTGAACATTGCTCCATAAAACCCTTGGCTTACTGTTGGTTCTTGAACGACTGTGCCACCCGCTTCTTTCACTT > CP000730/2716816‑2716954 GCAATGTTCAAAGATCTTGATGGACACCATTTTAATTTTTTGGTCTGCTAAAATGAAATTCTCAAAAGAATAAATAAAAAGCCCATACAGAGATGAAGCGTAATGTGCACCATGGTGCGACACATTAGTGTCTTCAATCAG > 2:490243/1‑141 aAATGTTCAAAGATCTTGATGGACACCATTTTAATTTTTTGGTCTGCTAAAATGAAATTCTCAAAAGAATAAATAAAAAGCCCATACAGAGATGAAGCGTAATGTGCACCATGGTGCGACACATTAGTGTCTTCAATCAGT < 1:349790/140‑1 CAATGTTCAAAGATCTTGATGGACACCATTTTAATTTTTTGGTCTGCTAAAATGAAATTCTCAAAAGAATAAATAAAAAGCCCATACAGAGATGAAGCGTAATGTGCACCATGGTGCGACACATTAGTGTCTTCAATCAGT < 2:1032933/141‑1 CAATGTTCAAAGATCTTGATGGACACCATTTTAATTTTTTGGTCTGCTAAAATGAAATTCTCAAAAGAATAAATAAAAAGCCCATACAGAGATGAAGCGTAATGTGCACCATGGTGCGACACATTAGTGTCTTCAATCAGT < 1:687290/141‑1 CAATGTTCAAAGATCTTGATGGACACCATTTTAATTTTTTGGTCTGCTAAAATGAAATTCTCAAAAGAATAAATAAAAAGCCCATACAGAGATGAAGCGTAATGTGCACCATGGTGCGACACATTAGTGTCTTCAATCAGT < 1:251069/141‑1 GTTCAAAGATCTTGATGGACACCATTTTAATTTTTTGGTCTGCTAAAATGAAATTCTCAAAAGAATAAATAAAAAGCCCATACAGAGATGAAGCGTAATGTGCACCATGGTGCGACACATTAGTGTCTTCAATCAGTATGG < 1:1383058/141‑1 GTTCAAAGATCTTGATGGACACCATTTTAATTTTTTGGTCTGCTAAAATGAAATTCTCAAAAGAATAAATAAAAAGCCCATACAGAGATGAAGCGTAATGTGCACCATGGTGCGACACATTAGTGTCTTCAATCAGTATGG > 2:914996/1‑141 GTTCAAAGATCTTGATGGACACCATTTTAATTTTTTGGTCTGCTAAAATGAAATTCTCAAAAGAATAAATAAAAAGCCCATACAGAGATGAAGCGTAATGTGCACCATGGTGCGACACATTAGTGTCTTCAATCAGTATGG < 2:1551468/141‑1 TTCAAAGATCTTGATGGACACCATTTTAATTTTTTGGTCTGCTAAAATGAAATTCTCAAAAGAATAAATAAAAAGCCCATACAGAGATGAAGCGTAATGTGCACCATGGTGCGACACATTAGTGTCTTCAATCAGTATGGG > 1:484892/1‑141 TTCAAAGATCTTGATGGACACCATTTTAATTTTTTGGTCTGCTAAAATGAAATTCTCAAAAGAATAAATAAAAAGCCCATACAGAGATGAAGCGTAATGTGCACCATGGTGCGACACATTAGTGTCTTCAATCAGTATGGG > 1:1297033/1‑141 TCAAAGATCTTGATGGACACCATTTTACTTTTTTGGTCTGCTAAAATGAAATACCCAAAAGAATAAATAAAAAGCCCATACAGAGATGCAGCGTAATGTGCACCATGGTGCGACACACTAGTGTCTTCAATCAGTATGGGC > 2:1630255/1‑141 TCAAAGATCTTGATGGACACCATTTTAATTTTTTGGTCTGCTAAAATGAAATTCTCAAAAGAATAAATAAAAAGCCCATACAGAGATGAAGCGTAATGTGCACCATGGTGCGACACATTAGTGTCTTCAATCAGTATGGGC < 1:318708/141‑1 CAAAGATCTTGATGGACACCATTTTAATTTTTTTTTTTTTTTTAATGAAATTCTCAAAAGAATAAATAAAAAGCCCATACAGAGATGAAGCGTAATGTGCACCATGGTGCGACACATTAGTGTCTTCAATCAGTATGGGCT > 2:1591310/1‑141 CAAAGATCTTGATGGACACCATTTTAATTTTTTGGTCTGCTAAAATGAAATTCTCAAAAGAATAAATAAAAAGCCCATACAGAGATGAAGCGTAATGTGCACCATGGTGCGACACATTAGTGTCTTCAATCAGTATGGGCT > 2:44665/1‑141 CAAAGATCTTGATGGACACCATTTTAATTTTTTGGTCTGCTAAAATGAAATTCTCAAAAGAATAAATAAAAAGCCCATACAGAGATGAAGCGTAATGTGCACCATGGTGCGACACATTAGTGTCTTCAATCAGTATGGGCT < 2:244243/141‑1 CAAAGATCTTGATGGACACCATTTTAATTTTTTGGTCTGCTAAAATGAAATTCTCAAAAGAATAAATAAAAAGCCCATACAGAGATGAAGCGTAATGTGCACCATGGTGCGACACATTAGTGTCTTCAATCAGTATGGGCT > 2:1419511/1‑141 CAAAGATCTTGATGGACACCATTTTAATTTTTTGGTCTGCTAAAATGAAATTCTCAAAAGAATAAATAAAAAGCCCAGACAGAGATGAAGCGTAATGTGCACCATGGTGCGACACATTAGTGTCTTCAATCAGTATGGGCT < 2:1390377/141‑1 AAAGATCTTGATGGACACCATTTTAATTTTTTGGTCTGCTAAAATGAAATTCTCAAAAGAATAAATAAAAAGCCCATACAGAGATGAAGCGTAATGTGCACCATGGTGCGACACATTAGTGTCTTCAATCAGTATGGGCTT < 2:95421/141‑1 AAAGATCTTGATGGACACCATTTTAATTTTTTGGTCTGCTAAAATGAAATTCTCAAAAGAATAAATAAAAAGCCCATACAGAGATGAAGCGTAATGTGCACCATGGTGCGACACATTAGTGTCTTCAATCAGTATGGGCTT < 2:356801/141‑1 AAAGATCTTGAGGGATAGCATTGTGATTTTTAGGTCTGCTAAAATGAAATTCTCAAAAGAATAAATAAAAAGCCCATACAGAGATGAAGCGGAATGTGCACCATGGTGCGACACATTAGTGTCTTCAAGCAGTATGGCCTT < 2:989579/141‑1 AAGATCTTGATGGACACCATTTTAATTTTTTGGTCTGCTAAAATGAAATTCTCAAAAGAATAAATAAAAAGCCCATACAGAGATGAAGCGTAATGTGCACCATGGTGCGACACATTAGTGTCTTCAATCAGTATGGGCTTT > 2:970327/1‑141 AAGATCTTGATGGACACCATTTTAATTTTTTGGTCTGCTAAAATGAAATTCTCAAAAGAATAAATAAAAAGCCCATACAGAGATGAAGCGTAATGTGCACCATGGTGCGACACATTAGTGTCTTCAATCAGTATGGGCTTT < 2:441965/141‑1 AAGATCTTGATGGACACCATTTTAATTTTTTGGTCTGCTAAAATGAAATTCTCAAAAGAATAAATAAAAAGCCCATACAGAGATGAAGCGTAATGTGCACCATGGTGCGACACATTAGTGTCTTCAATCAGTATGGGCTTT > 1:1329421/1‑141 AAGATCTTGATGGACACCATTTTAATTTTTTGGTCTGCTAAAATGAAATTCTCAAAAGAATAAATAAAAAGCCCATACAGAGATGAAGCGTAATGTGCACCATGGTGCGACACATTAGTGTCTTCAATCAGTATGGGCTTT < 1:1358262/141‑1 AAGATCTTGATGGACACCATTTTAATTTTTTGGTCTGCTAAAATGAAATTCTCAAAAGAATAAATAAAAAGAGCATACAGAGATGAAGCGTAATTTGCACCATGGTGCGACACATTAGTGTCTTCAATCAGTATGGGCTTT > 1:744704/1‑141 TAAAAAGCCCATACAGAGATGAAGCGTAATGTGCACCATGGTGCGACACATTAGTGTCTTCAATCAGTATGGGCTTTTTAGTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTAAAATGGTGTCCATCAAGAT > 1:1159425/1‑141 AAAGCCCATACAGAGATGAAGCGTAATGTGCACCATGGTGCGACACATTAGTGTCTTCAATCAGTATGGGCTTTTTATTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTAAAATGGTGTCCATCAAGATCTT > 1:1463664/1‑141 CCCATACAGAGATGAAGCGTAATGTGCACCATGGTGCGACACATTAGTGTCTTCAATCAGTATGGGCTTTTTATTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTAAAATGGTGTCCATCAAGATCTTTGAA > 2:756027/1‑141 CCATACAGAGATGAAGCGTAATGTGCACCATGGTGCGACACATTAGTGTCTTCAATCAGTATGGGCTTTTTATTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTAAAATGGTGTCCATCAAGATCTTTGAAC > 2:1500256/1‑141 TACAGAGATGAAGCGTAATGTGCACCATGGTGCGACACATTAGTGTCTTCAATCAGTATGGGCTTTTTATTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTAAAATGGTGTCCATCAAGATCTTTGAACATT > 1:425930/1‑141 GCGTAATGTGCACCATGGTGCGACACATTAGTGTCTTCAATCAGTATGGGC‑‑TTTGTTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTAAAATGGTGTCCATCAAGATCTTTGAACATTGCTCCATAAA > 1:1567323/1‑137 GCGTAATGTGCACCATGGTGCGACACATTAGTGTCTTCAATCAGTATGGGC‑‑TTTGTTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTAAAATGGTGTCCATCAAGATCTTTGAACATTGCTCCATAAA < 2:1567323/137‑1 GGTGCGACACATTAGTGTCTTCAATCAGTATGGGCTTTTTATTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTAAAATGGTGTCCATCAAGATCTTTGAACATTGCTCCATAAAACCCTTGGCTTACTGTTG < 1:1500256/141‑1 GGTGCGACACATTAGTGTCTTCAATCAGTATGGGCTTTTTATTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTAAAATGGTGTCCATCAAGATCTTTGAACATTGCTCCATAAAACCCTTGGCTTACTGTTG > 1:658873/1‑141 GCGACACATTAGTGTCNTCAATCAGTATGNGCTTTTTATTTATGCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTAAAATGGTGTCCATCAAGATCTTTGAACATTGCTCCATAAAACCCTTGGCTTACTGTTGGTT > 1:954916/1‑141 AATCAGTATGGGCTTTTTATTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTAAAATGGTGTCCATCAAGATCTTTGAACATTGCTCCATAAAACCCTTGGCTTACTGTTGGTTCTTGAACGACTGTGCCACC < 2:1062524/141‑1 TATGGGCTTTTTATTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTAAAATGGTGTCCATCAAGATCTTTGAACATTGCTCCATAAAACCCTTGGCTTACTGTTGGTTCTTGAACGACTGTGCCACCCGCTTC < 2:314053/141‑1 TGGGCTTTTTATTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTAAAATGGTGTCCATCAAGATCTTTGAACATTGCTCCATAAAACCCTTGGCTTACTGTTGGTTCTTGAACGACTGTGCCACCCGCTTCTT > 1:27290/1‑141 TGGGCTTTTTATTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTAAAATGGTGTCCATCAAAATCTTTGAACATTGCTCCATAAAACCCTTGGCTTACTGTTGGTTCTTGAACGACTGTGCCACCCGCTTCTT < 2:1354138/141‑1 GGGCTTTTTATTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTAAAATGGTGTCCATCAAGATCTTTGAACATTGCTCCATAAAACCCTTGGCTTACTGTTGGTTCTTGAACGACTGTGCCACCCGCTTCTTT < 1:1316354/141‑1 GGGCTTTTTATTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTAAAATGGTGTCCATCAAGATCTTTGAACATTGCTCCATAAAACCCTTGGCTTACTGTTGGTTCTTGAACGACTGTGCCACCCGCTTCTTT < 2:708073/141‑1 GGCTTTTTATTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTAAAATGGTGTCCATCAAGATCTTTGAACATTGCTCCATAAAACCCTTGGCTTACTGTTGGTTCTTGAACGACTGTGCCACCCGCTTCTTTC < 1:1461641/141‑1 GGCTTTTTATTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTAAAATGGTGTCCATCAAGATCTTTGAACATTGCTCCATAAAACCCTTGGCTTACTGTTGGTTCTTGAACGACTGTGCCACCCGCTTCTTTC > 1:1247681/1‑141 GGCTTTTTATTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTAAAATGGTGTCCATCAAGATCTTTGAACATTGCTCCATAAAACCCTTGGCTTACTGTTGGTTCTTGAACGACTGTGCCACCCGCTTCTTTC > 2:1292163/1‑141 GCTTTTTATTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTAAAATGGTGTCCATCAAGATCTTTGAACATTGCTCCATAAAACCCTTGGCTTACTGTTGGTTCTTGAACGACTGTGCCACCCGCTTCTTTCA > 1:688132/1‑141 GCTTTTTATTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTAAAATGGTGTCCATCAAGATCTTTGAACATTGCTCCATAAAACCCTTGGCTTACTGTTGGTTCTTGAACGACTGTGCCACCCGCTTCTTTCA > 1:688093/1‑141 CTTTTTATTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTAAAATGGTGTCCATCAAGATCTTTGAACATTGCTCCATAAAACCCTTGGCTTACTGTTGGTTCTTGAACGACTGTGCCACCCGCTTCTTTCAC < 2:275623/141‑1 TTTTTATTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTAAAATGGTGTCCATCAAGATCTTTGAACATTGCTCCATAAAACCCTTGGCTTACTGTTGGTTCTTGAACGACTGTGCCATCCGCTTCTTTCACT > 2:1166514/1‑141 TTTTTATTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTAAAATGGTGTCCATCAAGATCTTTGAACATTGCTCCATAAAACCCTTGGCTTACTGTTGGTTCTTGAACGACTGTGCCACCCGCTTCTTTCACT > 1:1447109/1‑141 TTTTATTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTAAAATGGTGTCCATCAAGATCTTTGAACATTGCTCCATAAAACCCTTGGCTTACTGTTGGTTCTTGAACGACTGTGCCACCCGCTTCTTTCACTT < 2:537754/141‑1 GCAATGTTCAAAGATCTTGATGGACACCATTTTAATTTTTTGGTCTGCTAAAATGAAATTCTCAAAAGAATAAATAAAAAGCCCATACAGAGATGAAGCGTAATGTGCACCATGGTGCGACACATTAGTGTCTTCAATCAGTATGGGCTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP000730/2716892‑2716742‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtatgggctttTTATTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTAAAATGGTGTCCATCAAGATCTTTGAACATTGCTCCATAAAACCCTTGGCTTACTGTTGGTTCTTGAACGACTGTGCCACCCGCTTCTTTCACTT > CP000730/2716816‑2716954 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |