BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	freq	annotation	gene	description
RA	CP000730	2,608,820	A→T	5.9%	intergenic (‑671/+159)	USA300HOU_2470 ← / ← USA300HOU_2471	dehydrogenase/hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	CP000730	2,608,820	0	A	T	5.9%	386.9 / 12.0	119	intergenic (‑671/+159)	USA300HOU_2470/USA300HOU_2471	dehydrogenase/hypothetical protein
Reads supporting (aligned to +/- strand): ref base A (50/62); new base T (2/5); total (52/67)
Fisher's exact test for biased strand distribution p-value = 4.66e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.81e-01

Only 100 of 119 total aligned reads displayed.

ACGTAATTTTAAACAAGTTGAAAATGAAGGATTCTAATATCATTTCGTTTATATATAGCAGACATGATAGAATTTTATATGTAAATCTTGTAGGTAATCGTTTTAAAAATAATATAAGTATGACT‑AAAGCCACATCCAATATAGGACGTGGCTTTTAGTATCGTTCCAGATTTGTGGGGAGTTAGGGTTTACTTAATTAAAGGGGTCTGCCCTCAATTGCTCACCAACGAGGGCAAGTTACATCAATCACACTTCAATTGCCGCCGACTAGGGGTAG  >  CP000730/2608683‑2608959

aCGTAATTTTAAACAAGTTGAAAATGAAGGATTCTAATATCATTTCGTTTATATATAGCAGACATGATAGAATTTTATATGTAAATCTTGTAGGTAATCGTTTTAAAAATAATATAAGTATGACT‑AAAGCCACATCCAata                                                                                                                                          >  1:1248278/1‑141 (MQ=255)

aCGTAATTTTAAACAAGTTGAAAATGAAGGATTCTAATATCATTTCGTTTATATATAGCAGACATGATAGAATTTTATATGTAAATCTTGTAGGTAATCGTTTTAAAAATAATATAAGTATGACT‑AAAGCCACATCCAata                                                                                                                                          <  1:344817/141‑1 (MQ=255)

 cGTAATTTTAAACAAGTTGAAAATGAAGGATTCTAATATCATTTCGTTTATATATAGCAGACATGATAGAATTTTATATGTAAATCTTGTAGGTAATCGTTTTAAAAATAATATAAGTATGACT‑AAAGCCACATCCAatat                                                                                                                                         >  1:1215800/1‑141 (MQ=255)

   tAATTTTAAACAAGTTGAAAATGAAGGATTCTAATATCATTTCGTTTATATATAGCAGACATGATAGAATTTTATATGTAAATCTTGTAGGTAATCGTTTTAAAAATAATATAAGTATGACT‑AAAGCCACATCCAATATAg                                                                                                                                       >  2:1356412/1‑141 (MQ=255)

     aTTTTAAACAAGTTGAAAATGAAGGATTCTAATATCATTTCGTTTATATATAGCAGACATGATAGAATTTTATATGTAAATCTTGTAGGTAATCGTTTTAAAAATAATATAAGTATGACT‑AAAGCCACATCCAATATAGGa                                                                                                                                     <  2:1078185/141‑1 (MQ=255)

       tttAAACAAGTTGAAAATGAAGGATTCTAATATCATTTCGTTTATATATAGCAGACATGATAGAATTTTATATGTAAATCTTGTAGGTAATCGTTTTAAAAATAATATAAGTATGACT‑AAAGCCACGTCCTATATTGGatg                                                                                                                                   <  2:379363/141‑3 (MQ=255)

       tttAAACAAGTTGAAAATGAAGGATTCTAATATCATTTCGTTTATATATAGCAGACATGATAGAATTTTATATGTAAATCTTGTAGGTAATCGTTTTAAAAATAATATAAGTATGACT‑AAAGCCACGTCCTATATTGGatg                                                                                                                                   <  2:513535/141‑3 (MQ=255)

        ttAAACAAGTTGAAAATGAAGGATTCTAATATCATTTCGTTTATATATAGCAGACATGATAGAATTTTATATGTAAATCTTGTAGGTAATCGTTTTAAAAATTATCTACGTATGACG‑AAAGCCACGTCCTATATTGGatgt                                                                                                                                  <  2:909277/141‑4 (MQ=255)

         tAAACAAGTTGAAAATGAAGGATTCTAATATCATTTCGTTTATATATAGCAGACATGATAGAATTTTATATGTAAATCTTGTAGGTAATCGTTTTAAAAATAATATAAGTATGACTAAAAGCCACGTCCTATATTGGatgt                                                                                                                                  <  2:636932/141‑4 (MQ=255)

           aaCAAGTTGAAAATGAAGGATTCTAATATCATTTCGTTTATATATAGCAGACATGATAGAATTTTATATGTAAATCTTGTAGGTAATCGTTTTAAAAATAATATAAGTATGACT‑AAAGCCACATCCAATATAGGACGTGGc                                                                                                                               <  1:26505/141‑1 (MQ=255)

           aaCAAGTTGAAAATGAAGGATTCTAATATCATTTCGTTTATATATAGCAGACATGATAGAATTTTATATGTAAATCTTGTAGGTAATCGTTTTAAAAATAATATAAGTATGACT‑AAAGCCACATCCAATATAGGACGTGGc                                                                                                                               >  2:236031/1‑141 (MQ=255)

               aGTTGAAAATGAAGGATTCTAATATCATTTCGTTTATATATAGCAGACATGATAGAATTTTATATGTAAATCTTGTAGGTAATCGTTTTAAAAATAATATAAGTATGACT‑AAAGCCACATCCAATATAGGACGTGGCtttt                                                                                                                           >  1:936893/1‑141 (MQ=255)

                gTTGAAAATGAAGGATTCTAATATCATTTCGTTTATATATAGCAGACATGATAGAATTTTATATGTAAATCTTGTAGGTAATCGTTTTAAAAATAATATAAGTATGACT‑AAAGCCACATCCAATATAGGAAGTGGCTTGTa                                                                                                                          >  2:61457/1‑141 (MQ=255)

                 ttGAAAATGAAGGATTCTAATATCATTTCGTTTATATATAGCAGACATGATAGAATTTTATATGTAAATCTTGTAGGTAATCGTTTTAAAAATAATATAAGTATGACT‑AAAGCCACATCCAATATAGGACGTGGCTTTTAg                                                                                                                         <  2:1643850/141‑1 (MQ=255)

                 ttGAAAATGAAGGATTCTAATATCATTTCGTTTATATATAGCAGACATGATAGAATTTTATATGTAAATCTTGTAGGTAATCGTTTTAAAAATAATATAAGTATGACT‑AAAGCCACATCCAATATAGGACGTGGCTTTTAg                                                                                                                         <  2:865352/141‑1 (MQ=255)

                        tGAAGGATTCTAATATCATTTCGTTTATATATAGCAGACATGATAGAATTTTATATGTAAATCTTGTAGGTAATCGTTTTAAAAATAATATAAGTATGACT‑AAAGCCACATCCAATATAGGACGTGGCTTTTAGTATCGtt                                                                                                                  <  2:1520539/141‑1 (MQ=255)

                         gAAGGATTCTAATATCATTTCGTTTATATATAGCAGACATGATAGAATTTTATATGTAAATCTTGTAGGTAATCGTTTTAAAAATAATATAAGTATGACT‑AAAGCCACATACAATGTAGGACGTGGCTTTTAGTATCGTTc                                                                                                                 <  2:419677/141‑1 (MQ=255)

                          aaGGATTCTAATATCATTTCGTTTATATATAGCAGACATGATAGAATTTTATATGTAAATCTTGTAGGTAATCGTTTTAAAAATAATATAAGTATGACT‑AAAGCCACATCCAATATAGGACGTGGCTTTTAGTATCGTTcc                                                                                                                <  2:1308327/141‑1 (MQ=255)

                           aGGATTCTAATATCATTTCGTTTATATATAGCAGACATGATAGAATTTTATATGTAAATCTTGTAGGTAATCGTTTGAAAAATAATATAAGTATCACT‑AAAGCAACATCCAATATAGGACGTCGCTTGTAGTATCGATCCa                                                                                                               >  2:788869/1‑141 (MQ=255)

                            ggATTCTAATATCATTTCGTTTATATATAGCAGACATGATAGAATTTTATATGTAAATCTTGTAGGTAATCGTTTTAAAAATAATATAAGTATGACT‑AAAGCCACATCCAATATAGGACGTGGCTTTTAGTATCGTTCCAg                                                                                                              <  2:533487/141‑1 (MQ=255)

                                  tAATATCATTTCGTTTATATATAGCAGACATGATAGAATTTTATATGTAAATCTTGTAGGTAATCGTTTTAAAAATAATATAAGTATGACT‑AAAGCCACATCCAATATAGGACGTGGCTTTTAGTATCGTTCCAGATTtgt                                                                                                        <  2:1289733/141‑1 (MQ=255)

                                   aaTATCATTTCGTTTATATATAGCAGACATGATAGAATTTTATATGTAAATCTTGTAGGTAATCGTTTTAAAAATAATATAAGTATGACT‑AAAGCCACATCCAATATAGGACGTGGCTTTTAGTATCGTTCCAGATTtgtg                                                                                                       <  1:503945/141‑1 (MQ=255)

                                   aaTATCATTTCGTTTATATATAGCAGACATGATAGAATTTTATATGTAAATCTTGTAGGTAATCGTTTTAAAAATAATATAAGTATGACT‑AAAGCCACATCCAATATAGGACGTGGCTTTTAGTATCGTTCCAGATTtgtg                                                                                                       <  1:1048712/141‑1 (MQ=255)

                                    atatCATTTCGTTTATATATAGCAGACATGATAGAATTTTATATGTAAATCTTGTAGGTAATCGTTTTAAAAATAATATAAGTATGACT‑AAAGCCACATCCAATATAGGACGTGGCTTTTAGTATCGTTCCAGATTTGTgg                                                                                                      <  1:321991/141‑1 (MQ=255)

                                      atCATTTCGTTTATATATAGCAGACATGATAGAATTTTATATGTAAATCTTGTAGGTAATCGTTTTAAAAATAATATAAGTATGACT‑AAAGCCACATCCAATATAGGACGTGGCTTTTAGTATCGTTCCAGATTTGTgggg                                                                                                    >  2:1095363/1‑141 (MQ=255)

                                        cATTTCGTTTATATATAGCAGACATGATAGAATTTTATATGTAAATCTTGTAGGTAATCGTTTTAAAAATAATATAAGTATGACT‑AAAGCCACATCCAATATAGGACGTGGCTTTTAGTATCGTTCCAGATTTGTGGGGAg                                                                                                  >  1:644104/1‑141 (MQ=255)

                                         aTTTCGTTTATATATAGCAGACATGATAGAATTTTATATGTAAATCTTGTAGGTAATCGTTTTAAAAATAATATAAGTATGACT‑AAAGCCACATCCAATATAGGACGTGGCTTTTAGTATCGTTCCAGATTTGTGGGGAGt                                                                                                 <  2:1587020/141‑1 (MQ=255)

                                            tCGTTTATATATAGCAGACATGATAGAATTTTATATGTAAATCTTGTAGGTAATCGTTTTAAAAATAATATAAGTATGACT‑AAAGCCACATCCAATATAGGACGTGGCTTTTAGTATCGTTCCAGATTTGTGGGGAGTTAg                                                                                              <  1:1285311/141‑1 (MQ=255)

                                             cGTTTATATATAGCAGACATGATAGAATTTTATATGTAAATCTTGTAGGTAATCGTTTTAAAAATAATATAAGTATGACT‑AAAGCCACATCCAATATAGGACGTGGCTTTTAGTATCGTTCCAGATTTGTGGGGAGTTAgg                                                                                             >  1:73037/1‑141 (MQ=255)

                                             cGTTTATATATAGCAGACATGATAGAATTTTATATGTAAATCTTGTAGGTAATCGTTTTAAAAATAATATAAGTATGACT‑AAAGCCACATCCAATATAGGACGTGGCTTTTAGTATCGTTCCAGATTTGTGGGGAGTTAgg                                                                                             >  1:72922/1‑141 (MQ=255)

                                              ttttATATATAGCAGACATGATAGAATTTTATATGTAAATCTTGTAGGTAATCGTTTTAAAAATAATATAAGTATGACT‑AAAGCCACATCCAATATAGGACGTGGCTTTTAGTATCGTTCCAGATTTGTGGGGAGTTAggg                                                                                            <  1:1340721/140‑1 (MQ=255)

                                              gTTTATATATAGCAGACATGATAGAATTTTATATGTAAATCTTGTAGGTAATCGTTTTAAAAATAATATAAGTATGACT‑AAAGCCACATCCAATATAGGACGTGGCTTTTAGTATCGTTCCAGATTTGTGGGGAGTTAggg                                                                                            <  1:91878/141‑1 (MQ=255)

                                              gTTTATATATAGCAAACATGATAGAATTTTATATGTAAATCTTGTAGGTAATCGTTTTAAAAATAATATAAGTATGACT‑AAAGCCACATCCAATATAGGACGTGGCTTTTAGTATCGTTCCAGATTTGTGGGGAGTTAggg                                                                                            <  1:117865/141‑1 (MQ=255)

                                                ttATATATAGCAGACATGATAGAATTTTATATGTAAATCTTGTAGGTAATCGTTTTAAAAATAATATAAGTATGACT‑AAAGCCACATCCAATATAGGACGTGGCTTTTAGTATCGTTCCAGATTTGTGGGGAGTTAGGGtt                                                                                          <  2:1551515/141‑1 (MQ=255)

                                                ttATATATAGCAGACATGATAGAATTTTATATGTAAATCTTGTAGGTAATCGTTTTAAAAATAATATAAGTATGACT‑AAAGCCACATCCAATATAGGACGTGGCTTTTAGTATCGTTCCAGATTTGTGGGGAGTTAGGGtt                                                                                          >  1:515177/1‑141 (MQ=255)

                                                  atatataGCAGACATGATAGAATTTTATATGT‑AATCTTGTAGGTAATCGTTTTAAAAATAATATAAGTATGACT‑AAAGCCACATCCAATATAGGACGTGGCTTTTAGTATCGTTCCAGATTTGTGGGGAGTTAGGGTTTAc                                                                                       <  1:1353385/141‑1 (MQ=255)

                                                   tatataGCAGACATGATAGAATTTTATATGTAAATCTTGTAGGTAATCGTTTTAAAAATAATATAAGTATGACT‑AAAGCCACATCCAATATAGGACGTGGCTTTTAGTATCGTTCCAGATTTGTGGGGAGTTAGGGTTTAc                                                                                       >  2:1254244/1‑141 (MQ=255)

                                                    atataGCAGACATGATAGAATTTTATATGTAAATCTTGTAGGTAATCGTTTTAAAAATAATATAAGTATGACT‑AAAGCCACATCCAATATAGGACGTGGCTTTTAGTATCGTTCCAGATTTGTGGGGAGTTAGGGTTTACt                                                                                      <  2:974570/141‑1 (MQ=255)

                                                     tataGCAGACATGATAGAATTTTATATGTAAATCTTGTAGGTAATCGTTTTAAAAATAATATAAGTATGACT‑AAAGCCACATCCAATATAGGACGTGGCTTTTAGTATCGTTCCAGATTTGTGGGGAGTTAGGGTTTACtt                                                                                     <  2:463448/141‑1 (MQ=255)

                                                       taGCAGACATGATAGAATTTTATATGTAAATCTTGTAGGTAATCGTTTTAAAAATAATATAAGTATGACT‑AAAGCCACATCCAATATAGGACGTGGCTTTTAGTATCGTTCCAGATTTGTGGGGAGTTAGGGTTTACttaa                                                                                   >  1:329488/1‑141 (MQ=255)

                                                        aGCAGACATGATAGAATTTTATATGTAAATCTTGTAGGTAATCGTTTTAAAAATAATATAAGTATGACT‑AAAGCCACATCCAATATAGGACGTGGCTTTTAGTATCGTTCCAGATTTGTGGGGAGTTAGGGTTTACttaat                                                                                  <  1:1099544/141‑1 (MQ=255)

                                                          cAGACATGATAGAATTTTATATGTAAATCTTGTAGGTAATCGTTTTAAAAATAATATAAGTATGACT‑AAAGCCACATCCAATATAGGACGTGGCTTTTAGTATCGTTCCAGATTTGTGGGGAGTTAGGGTTTACttaatta                                                                                <  1:559589/141‑1 (MQ=255)

                                                           aGACATGATAGAATTTTATATGTAAATCTTGTAGGTAATCGTTTTAAAAATAATATAAGTATGACT‑AAAGCCACATCCAATATAGGACGTGGCTTTTAGTATGGTTCCAGATTTGTGGGGAGTTAGGGTTTACttaattca                                                                               >  2:645822/1‑139 (MQ=255)

                                                             aCATGATAGAATTTTATATGTAAATCTTGTAGGTAATCGTTTTAAAAATAATATAAGTATGACT‑AAAGCCACATCCAATATAGGACGTGGCTTTTAGTATCGTTCCAGATTTGTGGGGAGTTAGGGTTTACTTAATTAAAg                                                                             >  1:195129/1‑141 (MQ=255)

                                                              cATGATAGAATTTTATATGTAAATCTTGTAGGTAATCGTTTTAAAAATAATATAAGTATGACT‑AAAGCCACATCCAATATAGGACGTGGCTTTTAGTATCGTTCCAGATTTGTGGGGAGTTAGGGTTTACTTAATTAAAgg                                                                            >  2:260700/1‑141 (MQ=255)

                                                                    aGAATTTTATATGTAAATCTTGTAGGTAATCGTTTTAAAAATAATATAAGTATGACT‑AAAGCCACATCCAATATAGGACGTGGCTTTTAGTATCGTTCCAGATTTGTGGGGAGTTAGGGTTTACTTAATTAAAGGGGTCTg                                                                      <  1:80921/141‑1 (MQ=255)

                                                                    aGAATTTTATATGTAAATCTTGTAGGTAATCGTTTTAAAAATAATATAAGTATGACT‑AAAGCCACATCCAATATAGGACGTGGCTTTTAGTATCGTTCCAGATTTGTGGGGAGTTAGGGTTTACTTAATTAAAGGGGTCTg                                                                      >  1:1315967/1‑141 (MQ=255)

                                                                     gAATTTTATATGTAAATCTTGTAGGTAATCGTTTTAAAAATAATATAAGTATGACT‑AAAGCCACATCCAATATAGGACGTGGCTTTTAGTATCGTTCCAGATTTGTGGGGAGTTAGGGTTTACTTAATTAAAGGGGTCTGc                                                                     <  2:58064/141‑1 (MQ=255)

                                                                        ttttATATGTAAATCTTGTAGGTAATCGTTTTAAAAATAATATAAGTATGACT‑AAAGCCACATCCAATATAGGACGTGGCTTTTAGTATCGtt                                                                                                                  >  1:1372230/1‑93 (MQ=255)

                                                                        ttttATATGTAAATCTTGTAGGTAATCGTTTTAAAAATAATATAAGTATGACT‑AAAGCCACATCCAATATAGGACGTGGCTTTTAGTATCGtt                                                                                                                  <  2:1372230/93‑1 (MQ=255)

                                                                        ttttATATGTAAATCTTGTAGGTAATCGTTTTAAAAATAATATAAGTATGACT‑AAAGCCACATCCAATATAGGACGTGGCTTTTAGTATCGTTCCAGATTTGTGGGGAGTTAGGGTTTACTTAATTAAAGGGGTCTGCCCt                                                                  <  2:1537970/141‑1 (MQ=255)

                                                                        ttttATATGTAAATCTTGTAGGTAATCGTTTTAAAAATAATATAAGTATGACT‑AAAGCCACATCCAATATAGGACGTGGCTTTTAGTATCGTTCCAGATTTGTGGGGAGTTAGGGTTTACTTAATTAAAGGGGTCTGCCCt                                                                  <  1:511769/141‑1 (MQ=255)

                                                                          ttATATGTAAATCTTGTAGGTAATCGTTTTAAAAATAATATAAGTATGACT‑AAAGCCACATCCAATATAGGACGTGGCTTTTAGTATCGTTCCAGATTTGTGGGGAGTTAGGGTTTACTTAATTAAAGGGGTCTGCCCTCa                                                                <  1:1469393/141‑1 (MQ=255)

                                                                           tataTGTAAATCTTGTAGGTAATCGTTTTAAAAATAATATAAGTATGACT‑AAAGCCACATCCAATATAGGACGTGGCTTTTAGTATCGTTCCAGATTTGTGGGGAGTTAGGGTTTACTTAATTAAAGGGGTCTGCCCTCaa                                                               <  1:690210/141‑1 (MQ=255)

                                                                            atatGTAAATCTTGTAGGTAATCGTTTTAAAAATAATATAAGTATGACT‑AAAGCCACATCCAATATAGGACGTGGCTTTTAGTATCGTTCCAGATTTGTGGGGAGGTAGGGTTTACTTAATTAAAGGGGTCTGCCCTCact                                                              >  1:749980/1‑139 (MQ=255)

                                                                              atGTAAATCTTGTAGGTAAACGTTTTAAAAATAATATAAGTATGACT‑AAAGCCACATCCAATATAGGACGTGGCTTTTAGTATCGTTCCAGATTTGTGGGGAGTTAGGGTTTACTTAATTAAAGGGGTCTGCCCTCAATTg                                                            <  1:89796/141‑1 (MQ=255)

                                                                               tGTAAATCTTGTAGGTAATCGTTTTAAAAATAATATAAGTATGACT‑AAAGCCACATCCAATATAGGACGTGGCTTTTAGTATCGTTCCAGATTTGTGGGGAGTTAGGGTTTACTTAATTAAAGGGGTCTGCCCTCAATTGc                                                           >  1:964893/1‑141 (MQ=255)

                                                                                gTAAATCTTGTAGGTAATCGTTTTAAAAATAATATAAGTATGACT‑AAAGCCACATCCAATATAGGACGTGGCTTTTAGTATCGTTCCAGATTTGTGGGGAGTTAGGGTTTACTTAATTAAAGGGGTCTGCCCTCAATTGCt                                                          <  2:1528702/141‑1 (MQ=255)

                                                                                gTAAATCTTGTAGGTAATCGGTTTAAAAATAATATAAGTATGACT‑AAAGCCACATCCAATATAGGACGTGGCTTTTAGTATCGTTCCAGATTTGTGGGGAGTTAGGGTTTACTTAATTAAAGGGGTCTGCCCTCAATTGCt                                                          >  2:758418/1‑141 (MQ=255)

                                                                                 tAAATCTTGTAGGTAATCGTTTTAAAAATAATATAAGTATGACT‑AAAGCCAAATCGAATTTAGGACGTGGCTTTTAGTATCGTTCCAGATTTGTGGGGAGTTAGGGTTTACTTAATTAAAGGGGTCTGCCCTCAATTGCTc                                                         >  1:380420/1‑141 (MQ=255)

                                                                                  aaaTCTTGTAGGTAATCGTTTTAAAAATAATATAAGTATGACT‑AAAGCCACATCCAATATAGGACGTGGCTTTTAGTATCGTTCCAGATTTGTGGGGAGTTAGGGTTTACTTAATTAAAGGGGTCTGCCCTCAATTGCTCa                                                        <  2:121065/141‑1 (MQ=255)

                                                                                     tCTTGTAGGTAATCGTTTTAAAAATAATATAAGTATGACT‑AAAGCCACATCCAATATAGGACGTGGCTTTTAGTATCGTTCCAGATTTGTGGGGAGTTAGGGTTTACTTAATTAAAGGGGTCTGCCCTCAATTGCTCACCa                                                     >  2:322353/1‑141 (MQ=255)

                                                                                       ttGTAGGTAATCGTTTTAAAAATAATATAAGTATGACT‑AAAGCCACATCCAATATAGGACGTGGCTTTTAGTATCGTTCCAGATTTGTGGGGAGTTAGGGTTTACTTAATTAAAGGGGTCTGCCCTcgttggtgagcaatt                                                   <  1:500374/141‑15 (MQ=255)

                                                                                         gTAGGTAATCGTTTTAAAAATAATATAAGTATGACT‑AAAGCCACATCCAATATAGGACGTGGCTTTTAGTATCGTTCCAGATTTGTGGGGAGTTAGGGTTTACTTAATTAAAGGGGTCTGCCCTCAATTGCTCACCAACGa                                                 >  1:486249/1‑141 (MQ=255)

                                                                                         gTAGGTAATCGTTTTAAAAATAATATAAGTATGACT‑AAAGCCACATCCAATATAGGACGTGGCTTTTAGTATCGTTCCAGATTTGTGGGGAGTTAGGGATTACTTAATTAAAGGGGTCTGCCCTCAATTGCTCACCAACGa                                                 >  1:852390/1‑141 (MQ=255)

                                                                                           aGGTAATCCTTTTAAAAATAATATAAGTATGACT‑AAAGCCACATCCAATATAGAACATGGCTTTTAGTATCGTTCCAGATTTGTTGGGCGTTAGGGTTTACTTAATTAAAGGGGTCTGCCCTCAATTGCTCACCAACGAgg                                               <  1:991715/141‑1 (MQ=255)

                                                                                             gTAATCGTTTTAAAAATAATATAAGTATGACT‑AAAGCCACATCCAATATAGGACGTGGCTTTTAGTATCGTTCCAGATTTGTGGGGAGTTAGGGTTTACTTAATTAAAGGGGTCTGCCCTCGATTGCTCACCAACGAGGGc                                             <  1:714452/141‑1 (MQ=255)

                                                                                                aTCGTTTTAAAAATAATATAAGTATGACT‑AAAGCCACATCCAATATAGGACGTGGCTTTTAGTATCGTTCCAGATTTGTGGGGAGTTAGGGTTTACTTAATTAAAGGGGTCTGCCCTCAATTGCTCACCAACGAGGGCAAg                                          >  1:234491/1‑141 (MQ=255)

                                                                                                  cGTTTTAAAAATAATATAAGTATGACT‑AAAGCCACATCCAATATAGGACGTGGCTTTTAGTATCGTTCCAGATTTGTGGGGAGTTa                                                                                               >  1:59983/1‑86 (MQ=255)

                                                                                                  cGTTTTAAAAATAATATAAGTATGACT‑AAAGCCACATCCAATATAGGACGTGGCTTTTAGTATCGTTCCAGATTTGTGGGGAGTTa                                                                                               <  2:59983/86‑1 (MQ=255)

                                                                                                   gTTTTAAAAATAATATAAGTATGACT‑AAAGCCACATCCAATATAGGACGTGGCTTTTAGTATCGTTCCAGATTTGTGGGGAGTTAGGGTTTACTTAATTAAAGGGGTCTGCCCTCAATTGCTCACCAACGAGGGCAAGTTa                                       >  1:1043343/1‑141 (MQ=255)

                                                                                                        aaaaaTAATATAAGTATGACT‑AAAGCCACATCCAATATAGGACGTGGCTTTTAGTATCGTTGAAGATTAGTGTGGATGTAAGGTTTTCTTAATTATAGGAGTCTTCCCTCAATTGCTCGCCAACGAGGGCAAGTTACgtca                                  >  1:1653313/1‑141 (MQ=255)

                                                                                                        aaaaaTAATATAAGTATGACT‑AAAGCCACATCCAATATAGGACGTGGCTTTTAGTATCGTTCCAGATTTGTGGGGAGTTAGGGTTTACTTAATTAAAGGGGTCNGCCNTCAATTGCTCACCAANGAGGGCAAGTTACatca                                  <  1:1511114/141‑1 (MQ=255)

                                                                                                         aaaaTAATATAAGTATGACT‑AAAGCCACATCCAATATAGGACGTGGCTTTTAGTATCGTTCCAGATTTGTGGGGAGTTAGGGTTTACTTAATTAAAGGGGTCTGCCCTCAATTGCTCACCAACGAGGGCAAGTTACatcaa                                 <  2:83828/141‑1 (MQ=255)

                                                                                                           aataatATAAGTATGACT‑AAAGCCACATCCAATATAGGACGTGGCTTTTAGTATCGTTCCAGATTTGTGGGGAGTTAGGGTTAACTTAATTAAAGGGGTCTGCCCTCAATTGCTCACCAACGAGGGCAAGTTACatcaatc                               >  1:864936/1‑141 (MQ=255)

                                                                                                            ataataTAAGTATGACT‑AAAGCCACATCCAATATAGGACGTGGCTTTTAGTATCGTTCCATATTTGTGGGGAGTTAGGTTTTACTTAATTAAAGGGGTCTGCCCTCAATTGCTCACCAACGAGGGCAAGTTACatcaatca                              <  1:986073/141‑1 (MQ=255)

                                                                                                               atatAAGTATGACT‑AAAGCCACATCCAATATAGGACGTGGCTTTTAGTATCGTTCCAGATTTGTGGGGAGTTAGGGTTTACTTAATTAAAGGGGTCTGCCCTCAATTGCTCACCAACGAGGGCAAGTTACATCAATCacac                           <  2:966425/141‑1 (MQ=255)

                                                                                                                tataAGTATGACT‑AAAGCCACATCCAATATAGGACGTGGCTTTTAGTATCGTTCCAGATTTGTGGGGAGTTAGGGTTTACTTAATTAAAGGGGTCTGCCCTCAATTGCTCACCAACGAGGGCAAGTTACATCAATCACACt                          >  1:1006168/1‑141 (MQ=255)

                                                                                                                tataAGTATGACT‑AAAGCCACATCCAATATAGGACGTGGCTTTTAGTATCGTTCCAGATTTGTGGGGAGTTAGGGTTTACTTAATTAAAGGGGTCTGCCCTCAATTGCTCACCAACGAGGGCAAGTTACATCAATCACACt                          <  2:763880/141‑1 (MQ=255)

                                                                                                                  taAGTATGACT‑AAAGCCACATCCAATATAGGACGTGGCTTTTAGTATCGTTCCAGATTTGTGGGGAGTTAGGGTTTACTTAATTAAAGGGGTCTGCCCTCAATTGCTCACCAACGAGGGCAAGTTACATCAATCACACTTc                        >  1:207753/1‑141 (MQ=255)

                                                                                                                     gTATGACT‑AAAGCCACATCCAATATAGGACGTGGCTTTTAGTATCGTTCCAGATTTGTGGGGAGTTAGGGTTTACTTAATTAAAGGGGTCTGCCCTCAATTGCTCACCAACGAGGGCAAGTTACATCAATCACACTTCAAt                     <  1:1054515/141‑1 (MQ=255)

                                                                                                                         gACT‑AAAGCCACATCCAATATAGGACGTGGCTTTTAGTATCGTTCCAGATTTGTGGGGAGGTAGGGTTTACTTAATTAAAGGGGTCTGCCCTCAATTGCTCACCAACGCGGGCAAGTTACATCAATCACACTTCAATTgcc                 >  2:162417/1‑141 (MQ=255)

                                                                                                                          aCT‑AAAGCCACATCCAATATAGGACGTGGCTTTTAGTATCGTTCCAGATTTGTGGGGAGTTAGGGTTTACTTAATTAAAGGGGTCTGCCCTCAATTGCTCACCAACGAGGGCAAGt                                         >  2:1145132/1‑116 (MQ=255)

                                                                                                                          aCT‑AAAGCCACATCCAATATAGGACGTGGCTTTTAGTATCGTTCCAGATTTGTGGGGAGTTAGGGTTTACTTAATTAAAGGGGTCTGCCCTCAATTGCTCACCAACGAGGGCAAGt                                         <  1:1145074/116‑1 (MQ=255)

                                                                                                                          aCT‑AAAGCCACATCCAATATAGGACGTGGCTTTTAGTATCGTTCCAGATTTGTGGGGAGTTAGGGTTTACTTAATTAAAGGGGTCTGCCCTCAATTGCTCACCAACGAGGGCAAGt                                         <  1:1145132/116‑1 (MQ=255)

                                                                                                                          aCT‑AAAGCCACATCCAATATAGGACGTGGCTTTTAGTATCGTTCCAGATTTGTGGGGAGTTAGGGTTTACTTAATTAAAGGGGTCTGCCCTCAATTGCTCACCAACGAGGGCAAGt                                         >  2:1145074/1‑116 (MQ=255)

                                                                                                                          aCT‑AAAGCCACATCCAATATAGGACGTGGCTTTTAGTATCGTTCCAGATTTGTGGGGAGTTAGGGTTTACTTAATTAAAGGGGTCTGCCCTCAATTGCTCACCAACGAGGGCAAGTTACATCAATCACACTTCAATTgccg                <  1:987661/141‑1 (MQ=255)

                                                                                                                          aCT‑AAAGCCACATCCAATATAGGACGTGGCTTTTAGTATCGTTCCAGATTTGTGGGGAGTTAGGGTTTACTTAATTAAAGGGGTCTGCCCTCAATTGCTCACCAACGAGGGCAAGTTACATCAATCACACTTCAATTgccg                <  1:1268519/141‑1 (MQ=255)

                                                                                                                           cT‑AAAGCCACATCCAATATAGGACGTGGCTTTTAGTATCGTTCCAGATTTGTGGGGAGTTAGGGTTTACTTAATTAAAGGGGTCTGCCCTCAATTGCTCACCAACGAGGGCAAGTTACATCAATCACACTTCAATTgccgc               <  1:1095363/141‑1 (MQ=255)

                                                                                                                              aaaGCCACATCCAATATAGGACGTGGCTTTTAGTATCGTTCCAGATTTGTGGGGAGTTAGGGTTTACTTAATTAAAGGGGTCTGCCCTCAATTGCTCACCAACGAGGGCAAGTTACATCAATCACACTTCAATTGccgccg             >  1:402717/1‑141 (MQ=255)

                                                                                                                               aaGCCACATCCAATATAGGGCGTGGCTTTTAGTATCGTTCCAGATTTGTGGGGAGTTAGGGTTTACTTAATTAAAGGGGTCTGCCCTCAATTGCTCACCAACGAGGGCAAGTTACATCAATCACACTTCAATTGCCGCCGa            <  2:73037/141‑1 (MQ=255)

                                                                                                                                aGCCACATCCAATATAGGACGTGGCTTTTAGTATCGTTCCAGATTTGTGGGGAGTTAGGGTTTACTTAATTAAAGGGGTCTGCCCTCAATTGCTCACCAACGAGGGCAAGTTACATCAATCACACTTCAATTGCCGCCGAc           <  1:619214/141‑1 (MQ=255)

                                                                                                                                aGCCACATCCAATATAGGACGTGGCTTTTAGTATCGTTCCAGATTTGTGGGGAGTTAGGGTTTACTTAATTAAAGGGGTCTGCCCTCAATTGCTCACCAACGAGGGCAAGTTACATCAATCACACTTCAATTGCCGCCGAc           >  2:1139160/1‑141 (MQ=255)

                                                                                                                                   cacgtCCTATATTGGATGTGGCTTTTAGTATCGTTCCAGATTTGTGGGGAGTTAGGGTTTACTTAATTAAAGGGGTCTGCCCTCAATTGCTCACCAACGAGGGCAAGTTACATCAATCACACTTCAATTGCCGCCGACTAg        >  1:343596/5‑141 (MQ=255)

                                                                                                                                     cgtCCTATATTGGATGGGGCTTTTAGTATCGTTCCAGATTTGTGGGGAGTTAGGGTTTACTTAATTAAAGGGGTCTGCCCTCAATTGCTCACCAACGAGGGCAAGTTACATCAATCACACTTCAATTGCCGCCGACTAggg      >  2:289541/3‑141 (MQ=255)

                                                                                                                                     caTCCAATATAGGACGTGGCTTTTAGTATCGTTCCAGATTTGTGGGGAGTTAGGGTTTACTTAATTAAAGGGGTCTGCCCTCAATTGCTCACCAACGAGGGCAAGTTACATCAATCACACTTCAATTGCCGCCGACTAggg      >  2:776488/1‑141 (MQ=255)

                                                                                                                                     caTCCAATATAGGACGTGGCTTTTAGTATCGTTCCAGATTTGTGGGGAGTTAGGGTTTACTTAATTAAAGGGGTCTGCCCTCAATTGCTCACCAACGAGGGCAAGTTACATCAATCACACTTCAATTGCCGCCGACTAggg      >  1:1511258/1‑141 (MQ=255)

                                                                                                                                      aTCCAATATAGGACGTGGCTTTTAGTATCGTTCCAGATTTGTGGGGAGTTAGGGTTTACTTAATTAAAGGGGTCTGCCCTCAATTGCTCACCAACGAGGGCAAGTTACATCAATCACACTTCAATTGCCGCCGACTAgggg     >  1:1318533/1‑141 (MQ=255)

                                                                                                                                       tCCTATATTGGATGTGGCTTTTAGTATCGTTCCAGATTTGTGGGGAGTTAGGGTTTACTTAATTAAAGGGGTCTGCCCTCAATTGCTCa                                                        <  1:982579/89‑1 (MQ=255)

                                                                                                                                         cAATATAGGACGTGGCTTTTAGTATCGTTCCAGATTTGTGGGGAGTTAGGGTTTACTTAATTAAAGGGGTCTGCCCTCAATTGCTCACCAACGAGGGCAAGTTACATCAATCACACTTCAATTGCCGCCGACTAGGGgtag  >  2:1027545/1‑141 (MQ=255)

ACGTAATTTTAAACAAGTTGAAAATGAAGGATTCTAATATCATTTCGTTTATATATAGCAGACATGATAGAATTTTATATGTAAATCTTGTAGGTAATCGTTTTAAAAATAATATAAGTATGACT‑AAAGCCACATCCAATATAGGACGTGGCTTTTAGTATCGTTCCAGATTTGTGGGGAGTTAGGGTTTACTTAATTAAAGGGGTCTGCCCTCAATTGCTCACCAACGAGGGCAAGTTACATCAATCACACTTCAATTGCCGCCGACTAGGGGTAG  >  CP000730/2608683‑2608959

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`