Predicted mutation
evidence seq id position mutation freq annotation gene description
RA CP000730 372,106 T→A 5.0% intergenic (‑166/‑204) USA300HOU_0339 ← / → lip1 hypothetical membrane protein/triacylglycerol lipase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP000730372,1060TA 5.0% 514.8 / 14.1 159intergenic (‑166/‑204)USA300HOU_0339/lip1hypothetical membrane protein/triacylglycerol lipase
Reads supporting (aligned to +/- strand):  ref base T (82/69);  new base A (6/2);  total (88/71)
Fisher's exact test for biased strand distribution p-value = 3.00e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.06e-01

Only 100 of 169 total aligned reads displayed.

ATTTTAATTTAGAAAAATCTGAAAACTTACTATAATTGTATAGTTTGAATTATTTTCATACCAATACAAATTAACTAATTATATATAGATTGAAACTATATTACTTAATAAAATATTTATCTTAAATGTTGTTGTGTTGATTCAACACCACAACTAAAAGTGTTTATAAATTATTTGGAAATACACATATTTGTAAATGATTAGTATCGATTTAATATCGTATTATTAAATTTTTATTAATTTTGTAGTCTTAATCAAAAAATAATATATGTCATGTTATA  >  CP000730/371966‑372246
                                                                                                                                            |                                                                                                                                            
attTTAATTTAGAAAAATCTGAAAACTTACTATAATTGTATAGTTTGAATTATTTTCATACCAATACAAATTAACTAATTATATATAGATTGAAACTATATTACTTAATAAAATATTTATCTTAAATGTTGTTGTGTTGAt                                                                                                                                              <  2:1058720/141‑1 (MQ=255)
attTTAATTTAGAAAAATCTGAAAACTTACTATAATTGTATAGTTTGAATTATTTTCATACCAATACAAATTAACTAATTATATATAGATTGAAACTATATTACTTAATAAAATATTTATCTTAAATGTTGTTGTGTTGAt                                                                                                                                              <  2:677338/141‑1 (MQ=255)
attTTAATTTAGAAAAATCTGAAAACTTACTATAATTGTATAGTTTGAATTATTTTCATACCAATACAAATTAACTAATTATATATAGATTGAAACTATATTACTTAATAAAATATTTATCTTAAATGTTGTTGTGTTGAt                                                                                                                                              <  2:1608992/141‑1 (MQ=255)
attTTAATTTAGAAAAATCTGAAAACTTACTATAATTGTATAGTTTGAATTATTTTCATACCAATACAAATTAACTAATTATATATAGATTGAAACTATATTACTTAATAAAATATTTATCTTAAATGTTGTTGTGTTGAt                                                                                                                                              <  1:1127782/141‑1 (MQ=255)
   ttAATTTAGAAAAATCTGAAAACTTACTATAATTGTATAGTTTGAATTATTTTCATACCAATACAAATTAACTAATTATATATAGATTGAAACTATATTACTTAATAAAATATTTATCTTAAATGTTGTTGTGTTGATTCa                                                                                                                                           <  1:1625027/141‑1 (MQ=255)
   ttAATTTAGAAAAATCTGAAAACTTACTATAATTGTATAGTTTGAATTATTTTCATACCAATACAAATTAACTAATTATATATAGATTGAAACTATATTACTTAATAAAATATTTATCTTAAATGTTGTGGTGTTGAATCa                                                                                                                                           <  2:1392413/141‑1 (MQ=255)
      aTTTAGAAAAATCTGAAAACTTACTATAATTGTATAGTTTGAATTATTTTCATACCAATACAAATTAACTAATTATATATAGATTGAAACTATATTACTTAATAAAATATTTATCTTAAATGTTGTTGTGTTGATTCAaca                                                                                                                                        >  2:769184/1‑141 (MQ=255)
        ttAGAAAAATCTGAAAACTTACTATAATTGTATAGTTTGAATTATTTTCATACCAATACAAATTAACTAATTATATATAGATTGAAACTATATTACTTAATAAAATATTTATCTTAAATGTTGTTGTGTTGATTCAAcacc                                                                                                                                      >  1:1136836/1‑141 (MQ=255)
         tAGAAAAATCTGAAAACTTACTATAATTGTATAGTTTGAATTATTTTCATACCAATACAAATTAACTAATTATATATAGATTGAAACTATATTACTTAATAAAATATTTATCTTAAATGTTGTTGTGTTGATTCAAcacca                                                                                                                                     <  1:1445705/141‑1 (MQ=255)
         tAGAAAAATCTGAAAACTTACTATAATTGTATAGTTTGAATTATTTTCATACCAATACAAATTAACTAATTATATATAGATTGAAACTATATTACTTAATAAAATATTTATCTTAAATGTTGTTGTGTTGATTCAAcacca                                                                                                                                     <  1:1065178/141‑1 (MQ=255)
          aGAAAAATCTGAAAACTTACTATAATTGTATAGTTTGAATTATTTTCATACCAATACAAATTAACTAATTATATATAGATTGAAACTATATTACTTAATAAAATATTTATCTTAAATGTTGTGGTGTTGAATCAacacaac                                                                                                                                    <  2:440989/141‑4 (MQ=255)
                aTCTGAATACTTACTATAATTGTATAGTTTGAAGTATTTTCATACGAATACAAATTAACTTATTATATATAGTTTGAAACTTTATTACTTAATAAAATATTTATCTTAAATGTTGTTGTGTCGATTCTACACCCCAACTaa                                                                                                                              >  1:1020121/1‑141 (MQ=255)
                aTCTGAAAACTTACTATAATTGTATAGTTTGAATTATTTTCATACCAATACAAATTAACTAATTATATATAGATTGAAACTATATTACTTAATAAAATATTTATCTTAAATGTTGTTGTGTTGATTCAACGCCACAACTaa                                                                                                                              >  2:332058/1‑141 (MQ=255)
                aTCTGAAAACTTACTATAATTGTATAGTTTGAATTATTTTCATACCAATACAAATTAACTAATTATATATAGATTGAAACTATATTACTTAATAAAATATTTATCTTAAATGTTGTTGTGTTGATTCAACACCACAACTaa                                                                                                                              >  1:961738/1‑141 (MQ=255)
                aTCTGAAAACTTACTATAATTGTATAGTTTGAATTATTTTCATACCAATACAAATTAACTAATTATATATAGATTGAAACTATATTACTTAATAAAATATTTATCTTAAATGTTGTTGTGTTGATTCAACACCACAACTaa                                                                                                                              >  2:1286623/1‑141 (MQ=255)
                aTCTGAAAACTTACTATAATTGTATAGTTTGAATTATTTTCATACCAATACAAATTAACTAATTATATATAGATTGAAACTATATTACTTAATAAAATATTTATCTTAAATGTTGTTGTGTTGATTCAACACCACAACTaa                                                                                                                              >  1:845388/1‑141 (MQ=255)
                aTCTGAAAACTTACTATAATTGTATAGTTTGAATTATTTTCATACCAATACAAATTAACTAATTATATATAGATTGAAACTATATTACTTAATAAAATATTTATCTTAAATGTTGTTGTGTTGATTCAACACCACAACTaa                                                                                                                              >  1:1138065/1‑141 (MQ=255)
                     aaaaCTTACTATAATTGTATAGTTTGAATAATTTTCATACCAATACAAATTAACTAATTATATATAGATTGAAACTATATTACTTAATAAAATATTTATCTTAAATGTTGTTGTGTTGATTCAACACCACAACTAAAAgtg                                                                                                                         >  1:270519/1‑141 (MQ=255)
                         cTTACTATAATTGTATAGTTTGAATTATTTTCATACCAATACAAATTAACTAATTATATATAGATTGAAACTATATTACTTAATAAAATATTTATCTTAAATGTTGTTGTGTTGATTCAACACCACAACTAAAAGTGTTta                                                                                                                     >  1:1189645/1‑141 (MQ=255)
                         cTTACTATAATTGTATAGTTTGAATTATTTTCATACCAATACAAATTAACTAATTATATATAGATTGAAACTATATTACTTAATAAAATATTTATCTTAAATGTTGTTGTGTTGATTCAACACCACAACTAAAAGTGTTta                                                                                                                     <  1:399583/141‑1 (MQ=255)
                          ttACTATAATTGTATAGTTTGAATTATTTTCATACCAATACAAATTAACTAATTATATATAGATTGAAACTATATTACTTAATAAAATATTTATCTTAAATGTTGTTGTGTTGATTCAACACCACAACTAAAAGTGTTtat                                                                                                                    <  2:1095103/141‑1 (MQ=255)
                           tACTATAATTGTATAGTTTGAATTATTTTCATACCAATACAAATTAACTAATTATATATAGATTGAAACTATATTACTTAATAAAATATTTATCTTAAATGTTGTTGTGTTGATTCAACACCACAACTAAAAGTGTTtata                                                                                                                   <  1:340805/141‑1 (MQ=255)
                            aCTATAATTGTATAGTTTGAATTATTTTCATACCAATACAAATTAACTAATTATATATAGATTGAAACTATATTACTTAATAAAATATTTATCTTAAATGTTGTTGTGTTGATTCAACACCACAACTAAAAGTGTTTATaa                                                                                                                  >  1:995029/1‑141 (MQ=255)
                               ataATTGTATAGTTTGAATTATTTTCATACCAATACAAATTAACTAATTATATATAGATTGAAACTATATTACTTAATAAAATATTTATCTTAAATGTTGTTGTGTTGATTCAACACCACAACTAAAAGTGTTTATAAatt                                                                                                               >  2:234143/1‑141 (MQ=255)
                               ataATTGTATAGTTTGAATTATTTTCATACCAATACAAATTAACTAATTATATATAGATTGAAACTATATTACTTAATAAAATATTTATCTTAAATGTTGTTGTGTTGATTCAACACCACAACTAAAAGTGTTTATAAatt                                                                                                               >  2:129953/1‑141 (MQ=255)
                                taATTGTATAGTTTGAATTATTTTCATACCAATACAAATTAACTAATTATATATAGATTGAAACTATATTACTTAATAAAATATTTATCTTAAATGTTGTTGTGTTGATTCAACACCACAACTAAAAGTGTTTATAAatta                                                                                                              <  2:1003787/141‑1 (MQ=255)
                                   ttGTATAGTTTGAATTATTTTCATACCAATACAAATTAACTAATTATATATAGATTGAAACTATATTACTTAATAAAATATTTATCTTAAATGTTGTTGTGTTGATTCAACACCACAACTAAAAGTGTTTATAAATTAttt                                                                                                           <  1:1638070/141‑1 (MQ=255)
                                      tataGTTTGAATTATTTTCATACCAATACAAATTAACTAATTATATATAGATTGAAACTATATTACTTAATAAAATATTTATCTTAAATGTTGTTGTGTTGATTCAACACCACAACTAAAAGTGTTTATAAATTATTTGGa                                                                                                        <  1:1470237/141‑1 (MQ=255)
                                         aGTTTGAATTATTTTCATACCAATACAAATTAACTAATTATATATAGATTGAAACTATATTACTTAATAAAATATTTATCTTAAATGTTGTTGTGTTGATTCAACACCACAACTAAAAGTGTTTATAAATTATTTGGAAAt                                                                                                     >  2:1147984/1‑141 (MQ=255)
                                         aGTTTGAATTATTTTCATACCAATACAAATTAACTAATTATATATAGATTGAAACTATATTACTTAATAAAATATTTATCTTAAATGTTGTTGTGTTGATTCAACACCACAACTAAAAGTGTTTATAAATTATTTGGAAAt                                                                                                     >  1:1211170/1‑141 (MQ=255)
                                          gTTTGAATTATTTTCATACCAATACAAATTAACTAATTATATATAGATTGAAACTATATTACTTAATAAAATATTTATCTTAAATGTTGTTGTGTTGATTCAACACCACAACTAAAAGTGTTTATAAATTATTTGGAAATa                                                                                                    >  1:2326/1‑141 (MQ=255)
                                          gTTTGAATTATTTTCATACCAATACAAATTAACTAATTATATATAGATTGAAACTATATTACTTAATAAAATATTTATCTTAAATGATGTTGTGTTGATTCAACACCACAACTAAAAGTGTTTATAAATTATTTGGAAATa                                                                                                    >  2:1318880/1‑141 (MQ=255)
                                            ttGAATTATTTTCATACCAATACAAATTAACTAATTATATATAGATTGAAACTATATTACTTAATAAAATATTTATCTTAAATGTTGTTGTGTTGATTCAACACCACAACTAAAAGTGTTTATAAATTATTTGGAAATaca                                                                                                  <  2:301238/141‑1 (MQ=255)
                                              gAATTATTTTCATACCAATACAAATTAACTAATTATATATAGATTAAAACTATATTACTTAATAAAATATTTATCTTAAATGTTGTTGTGTTGATTCAACACCACAACTAAAAGTGTTTATAAATTATTTGGAAATAcaca                                                                                                <  1:1577999/141‑1 (MQ=255)
                                               aaTTATTTTCATACCAATACAAATTAACTAATTATATATAGATTGAAACTATATTACTTAATAAAATATTTATCTTAAATGTTGTTGTGTTGATTCAACACCACAACTAAAAGTGTTTATAAATTATTTGGAAATACACat                                                                                               <  2:322025/141‑1 (MQ=255)
                                                  tattTTCATACCAATACAAATTAACTAATTATATATAGATTGAAACTATATTACTTAATAAAATATTTATCTTAAATGTTGTTGTGTTGATTCAACACCACAACTAAAAGTGTTTATAAATTATTTGGAAATACACATAtt                                                                                            <  2:121527/141‑1 (MQ=255)
                                                    ttttCATACCAATACAAATTAACTAATTATATATAGATTGAAACTATATTACTTAATAAAATATTTATCTTAAATGTTGTTGTGTTGATTCAACACCACAACTAAAAGTGTTTATAAATTATTTGGAAATACACATATTTg                                                                                          >  2:1072350/1‑141 (MQ=255)
                                                    ttttCATACCAATACAAATTAACTAATTATATATAGATTGAAACTATATTACTTAATAAAATATTTATCTTAAATGTTGTTGTGTTGATTCAACACCACAACTAAAAGTGTTTATAAATTATTTGGAAATACACATATTTg                                                                                          >  2:421103/1‑141 (MQ=255)
                                                    ttttCATACCAATACAAATTAACTAATTATATATAGATTGAAACTATATTACTTAATAAAATATTTATCTTAAATGTTGTTGTGTTGATTCAACACCACAACTAAAAGTGTTTATAAATTATTTGGAAATACACATATTTg                                                                                          <  2:1362824/141‑1 (MQ=255)
                                                     tttCATACCAATACAAATTAACTAATTATATATAGATTGAAACTATATTACTTAATAAAATATTTATCTTAAATGTTGTTGTGTTGAt                                                                                                                                              <  1:587481/88‑1 (MQ=255)
                                                     tttCATACCAATACAAATTAACTAATTATATATAGATTGAAACTATATTACTTAATAAAATATTTATCTTAAATGTTGTTGTGTTGAt                                                                                                                                              >  2:587481/1‑88 (MQ=255)
                                                     tttCATACCAATACAAATTAACTAATTATATATAGATTGAAACTATATTACTTAATAAAATATTTATCTTAAATGTTGTTGTGTTGATTCAACACCACAACTAAAAGTGTTTATAAATTATTTGGAAATACACATATTTGt                                                                                         <  2:504419/141‑1 (MQ=255)
                                                      ttCATACCAATACAAATTAACTAATTATATATAGATTGAAACTATATTACTTAATAAAATATTTATCTTAAATGTTGTTGTGTTGATTCAACACCACAACTAAAAGTGTTTATAAATTATTTGGAAATACACATATTTGTa                                                                                        <  1:757668/141‑1 (MQ=255)
                                                        cATACCAATACAAATTAACTAATTATATATAGATTGAAACTATATTACTTAATAAAATATTTATCTTAAATGTTGTTGTGTTGATTCAACACCACAACTAAAAGTGTTTATAAATTATTTGGAAATACACATATTTGTaaa                                                                                      >  1:233388/1‑141 (MQ=255)
                                                         aaaCCAATACAAAAAAACTAATTATATATAGATTGAAAATATATTACTTAATAAAATATTTATCTTAAATGTTGTTGTGTTGATACAACACCACAAATAAAAGTGTTTATAAATTATTTGGAAATACAAATATTTGTAAAt                                                                                     >  2:1175004/3‑141 (MQ=255)
                                                          tACCAATACAAATTAACTAATTATATATAGATTGAAACTATATTACTTAATAAAATATTTATCTTAAATGTTGTTGTGTTGATTCAACACCACAACTAAAAGTGTTTATAAATTATTTGGAAATACACATATTTGTAAATg                                                                                    >  1:1607819/1‑141 (MQ=255)
                                                            ccAATACAAATTAACTAATTATATATAGATTGAAACTATATTACTTAATAAAATATTTATCTTAAATGTTGTTGTGTTGATTCAACACCACAACTAAAAGTGTTTATAAATTATTTGGAAATACACATATTTGTAAATGAt                                                                                  >  2:220221/1‑141 (MQ=255)
                                                                 aCAAATTAACTAATTATATATAGATTGAAACTATATTACTTAATAAAATATTTATCTTAAATGTTGTTGTGTTGATTCAACACCACAACTAAAAGTGTTTATAAATTATTTGGAAATACACATATTTGTAAATGATTAGTa                                                                             <  1:1351407/141‑1 (MQ=255)
                                                                  cAAATTAACTAATTATATATAGATTGAAACTATATTACTTAATAAAATATTTATCTTAAATGTTGTTGTGTTGATTCAACACCACAACTAAAAGTGTTTATAAATTATTTGGAAATACACATATTTGTAAATGATTAGTAt                                                                            >  2:387215/1‑141 (MQ=255)
                                                                   aaaTTAACTAATTATATATAGATTGAAACTATATTACTTAATAAAATATTTATCTTAAATGTTGTTGTGTTGATTCAACACCACAACTAAAAGTGTTTATAAATTATTTGGAAATACACATATTTGTAAATGATTAGTATc                                                                           <  1:118265/141‑1 (MQ=255)
                                                                    aaTTAACTAATTATATATAGATTGAAACTATATTACTTAATAAAATATTTATCTTAAATGTTGTTGTGTTGATTCAACACCACAACTAAAAGTGTTTATAAATTATTTGGAAATACACATATTTGTAAATGATTAGTATCg                                                                          >  2:377216/1‑141 (MQ=255)
                                                                    aaTTAACTAATTATATATAGATTGAAACTATATTACTTAATAAAATATTTATCTTAAATGTTGTTGTGTTGATTCAACACCACAACTAAAAGTGTTTATAAATTATTTGGAAATACACATATTTGTAAATGATTAGTATCg                                                                          >  1:900588/1‑141 (MQ=255)
                                                                     aTTAACTAATTATATATAGATTGAAACTATATTACTTAATAAAATATTTATCTTAAATGTTGTTGTGTTGATTCAACACCACAACTAAAAGTGTTTATAAATTATTTGGAAATACACATATTTGTAAATGATTAGTATCGa                                                                         <  1:41668/141‑1 (MQ=255)
                                                                         aCTAATTATATATAGATTGAAACTATATTACTTAATAAAATATTTATCTTAAATGTTGTTGTGTTGATTCAACACCACAACTAAAAGTGTTTATAAATTATTTGGAAATACACATATTTGTAAATGATTAGTATCGATTTa                                                                     <  1:1286623/141‑1 (MQ=255)
                                                                         aCTAATTATATATAGATTGAAACTATATTACTTAATAAAATATTTATCTTAAATGTTGTTGTGTTGATTCAACACCACAACTAAAAGTGTTTATAAATTATTTGGAAATACACATATTTGTAAATGATTAGTATCGATTTa                                                                     >  2:188998/1‑141 (MQ=255)
                                                                            aaTTATATATAGATTGAAACTATATTACTTAATAAAATATTTATCTTAAATGTTGTTGTGTTGATTCAACACCACAACTAAAAGTGTTTATAAATTATTTGGAAATACACATATTTGTAAATGATTAGTATCGATTTAata                                                                  >  1:21631/1‑141 (MQ=255)
                                                                             aTTATATATAGATTGAAACTATATTACTTAATAAAATATTTATCTTAAATGTTGTTGTGTTGATTCAACACCACAACTAAAAGTGTTTATAAATTATTTGGAAATACACATATTTGTAAATGATTAGTATCGATTTAatat                                                                 >  1:1240383/1‑141 (MQ=255)
                                                                                   tataGATTGAAACTATCTTACTTAATAAAATATTTATCTTAAATGTTGTCGTGTTCATTCAACACCACAACTAAAAGTGTTTATAAATTATTTGGAAATACACATATTTGTAAATAAATAGTATCGAATAAAAATAGtatt                                                           >  2:984953/1‑141 (MQ=255)
                                                                                      aGATTGAAACTATATTACTTAATAAAATATTTATCTTAAATGTTGTTGTGTTGATTCAACACCACAACTAAAAGTGTTTATAAATTATTTGGAAATACACATATTTGTAAATGATTAGTATCGATTTAATATCGTattatt                                                        <  2:1086904/141‑1 (MQ=255)
                                                                                          tGAAACTATATTACTTAATAAAATATTTATCTTAAATGTTGTTGTGTTGATTCAACACCACAACTAAAAGTGTTTATAAATTATTTGGAAATACACATATTTGTAAATGATTAGTATCGATTTAATATCGTATTATTAAAt                                                    <  1:1273740/141‑1 (MQ=255)
                                                                                          tGAAACTATATTACTTAATAAAATATTTATCTTAAATGTTGTTGTGTTGATTCAACACCACAACTAAAAGTGTTTATAAATTATTTGGAAATACACATATTTGTAAATGATTAGTATCGATTTAATATCGTATTATTAAAt                                                    >  1:874457/1‑141 (MQ=255)
                                                                                           gAAACTATATTACTTAATAAAATATTTATCTTAAATGTTGTTGTGTTGATTCAACACCACAACTAAAAGTGTTTATAAATTATTTGGAAATACACATATTTGTAAATGATTAGTATCGATTTAATATCGTATTATTAAAtt                                                   >  2:1540148/1‑141 (MQ=255)
                                                                                            aaaCTATATTACTTAATAAAATATTTATCTTAAATGTTGTTGTGTTGATTCAACACCACAACTAAAAGTGTTTATAAATTATTTGGAAATACACATATTTGTAAATGATTAGTATCGATTTAATATCGTATTATTAAAttt                                                  <  1:34494/141‑1 (MQ=255)
                                                                                             aaCTATATTACTTAATAAAATATTTATCTTAAATGTTGTTGTGTTGATTCAACACCACAACTAAAAGTGTTTATAAATTATTTGGAAATACACATATTTGTAAATGATTAGTATCGATTTAATATCGTATTATTAAAtttt                                                 >  1:1395215/1‑141 (MQ=255)
                                                                                               cTAGATTACTTAATAAAATATTTATCTTAAATGTTGTTGTGTTGATTCAACACCACAACTAAAAGTGTTTATAAATTATTTGGAAATACACATATTTGTAAATGATTAGTATCGATTTAATATCGTATTATTAAATTTtta                                               <  2:623459/141‑1 (MQ=255)
                                                                                                 atatTACTTAATAAAATATTTATCTTAAATGTTGTTGTGTTGATTCAACACCACAACTAAAAGTGTTTATAAATTATTTGGAAATACACATATTTGTAAATGATTAGTATCGATTTAATATCGTATTATTAAATTTttatt                                             >  1:1328375/1‑141 (MQ=255)
                                                                                                      aCTTAATAAAATATTTATCTTAAATGTTGTTGTGTTGATTCAACACCACAACTAAAAGTGTTTATAAATTATTTGGAACTACACATATTTGTAAATGATTAGTATCGATTTAATATCGTATTATTAAATTTTTATTAAttt                                        >  1:1349360/1‑141 (MQ=255)
                                                                                                      aCTTAATAAAATATTTATCTTAAATGTTGTTGTGTTGATTCAACACCACAACTAAAAGTGTTTATAAATTATTTGGAAATACACATATTTGTAAATGATTAGTATCGATTTAATATCGTATTATTAAATTTTTATTAAttt                                        >  2:763030/1‑141 (MQ=255)
                                                                                                        ttAATAAAATATTTATCTTAAATGTTGTTGTGTTGATTCAACACCACAACTAAAAGTGTTTATAAATTATTTGGAAATACACATATTTGTAAATGATTAGTATCGATTTAATATCGTATTATTAAATTTTTATTAATTTTg                                      <  2:94321/141‑1 (MQ=255)
                                                                                                             aaaaTATTTATCTTAAATGTTGTTGTGTTGATTCAACACCACAACTAAAAGTGTTTATAAATTATTTGGAAATACACATATTTGTAAATGATTa                                                                                <  2:615942/94‑1 (MQ=255)
                                                                                                             aaaaTATTTATCTTAAATGTTGTTGTGTTGATTCAACACCACAACTAAAAGTGTTTATAAATTATTTGGAAATACACATATTTGTAAATGATTAGTATCGATTTAATATCGTATTATTAAATTTTTATTAATTTTGTAGTc                                 >  2:1262922/1‑141 (MQ=255)
                                                                                                               aaTATTTATCTTAAATGTTGTTGTGTTGATTCAACACCACAACTAAAAGTGTTTATAAATTATTTGGAAATACACATATTTGTAAATGATTAGTATCGATTTAATATCGTATTATTAAATTTTTATTAATTTTGTAGTCtt                               <  2:179311/141‑1 (MQ=255)
                                                                                                                atatTTATCTTAAATGTTGTTGTGTTGATTCAACACCACAACTAAAAGTGTTTATAAATTATTTGGAAATACACATATTTGTAAATGATTAGTATCGATTTAATATCGTATTATTAAATTTTTATTAATTTTGTAGTCTTa                              >  2:932545/1‑141 (MQ=255)
                                                                                                                 tatTTATCTTAAATGTTGTTGTGTTGATTCAACACCACAACTAAAAGTGTTTATAAATTATTTGGAAATACACATATTTGTAAATGATTAGTATCGATTTAATATCGTATTATTAAATTTTTATTAATTTTGTAGTCTTaa                             >  1:931411/1‑141 (MQ=255)
                                                                                                                  atTTATCTTAAATGTTGTTGTGTTGATTCAACACCACAACTAAAAGTGTTTATAAATTATTTGGAAATACACATATTTGTAAATGATTAGTATCGATTTAATATCGTATTATTAAATTTTTATTAATTTTGTAGTCTTAAt                            >  1:630168/1‑141 (MQ=255)
                                                                                                                   tttATCTTAAATGTTGTTGTGTTGATTCAACACCTCAACTAAAAGTGTTTATAAATTATTTGGAAATACACATATTTGTAAATGATTAGTATCGATTTAATATCGTATTATTAAATTTTTATTAATTTTGTAGTCTTAATc                           <  1:196467/141‑1 (MQ=255)
                                                                                                                       tCTTAAATGTTGTTGTGTTGATTCAACACCACAACTAAAAGTGTTTATAAATTATTTGGAAATACACATATTTGTAAATGATTAGTATCGATTTAATATCGTATTATTAAATTTTTATTAATTTTGTAGTCTTAATCaaaa                       >  1:1403767/1‑141 (MQ=255)
                                                                                                                       cacttttagttgtggtGTTGAATCAACACAACAACTAAAAGTGTTTATAAATTATTTGGAAATACACATATTTGTAAATGATTAGTATCGATTTAATATCGTATTATTAAATTTTTATTAATTTTGTAGTCTTAATCaaaa                       >  1:665403/9‑141 (MQ=39)
                                                                                                                          tAAATGTTGTTGTGTTGATTCAACACCACAACTAAAAGTGTTTATAAATTATTTGGAAATACACATATTTGTAAATGATTAGTATCGATTTAATATCGTATTATTAAATTTTTATTAATTTTGTAGTCTTAATCAAAAaat                    <  1:1027668/141‑1 (MQ=255)
                                                                                                                            ttaggtgtggggttgAATCAACACAACAACTAACAGTGTTTATAAATTATTGGGGAATACACATATTTGTAAATGATTAGTATCGATTTAATATCGTATTATTAAATTTTTATTAATTTTGGAGTCGTATTCAAAAaataa                  >  2:1403130/12‑141 (MQ=255)
                                                                                                                              tgttgttgtGTTGATTCAACACCACAACTAAAAGTGTTTATAAATTATTTGGAAATACACATATTTGTAAATGATTAGTATCGATTTAATATCGTATTATTAAATTTTTATTAATTTTGTAGTCTTAATCAAAAAataata                <  2:1262575/141‑1 (MQ=255)
                                                                                                                                 tgttgtgttgATTCAACACCACAACTAAAAGTGTTTATAAATTATTTGGAAATACACATATTTGTAAATGATTAGTATCGATTTAATATCGTATTATTAAATTTTTATTAATTTTGTAGAAAAAATAAAAAAATAatatat             <  2:995029/141‑1 (MQ=255)
                                                                                                                                 tgtggtgttgAATCAACACAACAACTAAAAGTGTTTATAAATTATTTGGAAATACACATATTTGTAAATGATTAGTATCGATTTAATATCGTATTATTAAATTTTTATTAATTTTGTAGTCTTAATCAAAAAATAatatat             >  2:883620/1‑141 (MQ=255)
                                                                                                                                  gttgtgttgATTCAACACCACAACTAAAAGTGTTTATAAATTATTTGGaaa                                                                                                      >  1:1638302/1‑51 (MQ=255)
                                                                                                                                  gttgtgttgATTCAACACCACAACTAAAAGTGTTTATAAATTATTTGGaaa                                                                                                      <  2:1638302/51‑1 (MQ=255)
                                                                                                                                  gttgtgttgATTCAACACCACAACTAAAAGTGTTTATAAATTATTTGGAAATACACATATTTGTAAATGATTAGTATCGATTTAATATCGTATTATTAAATTTTTATTAATTTTGTAGTCTTAATCAAAAAATAATATATg            >  1:572812/1‑141 (MQ=255)
                                                                                                                                  gttgtgttgATTCAACACCACAACTAAAAGTGTTTATAAATTATTTGGAAATACACATATTTGTAAATGATTAGTATCGATTTAATATCGTATTATTAAATTTTTATTAATTTTGTAGTCTTAATCAAAAAATAATATATg            >  2:1579683/1‑141 (MQ=255)
                                                                                                                                   ttgtgttgATTCAACACCACAACTAAAAGTGTTTATAAATTATTTGGAAATACACATATTTGTAAATGATTAGTATCGATTTAATATCGTATTATTAAATTTTTATTAATTTTGTAGTCTTAATCAAAAAATAATATATGt           >  2:1114548/1‑141 (MQ=255)
                                                                                                                                   ttgtgttgATTCAACACCACAACTAAAAGTGTTTATAAATTATTTGGAAATACACATATTTGTAAATGATTAGTATCGATTTAATATCGTATTATTAAATTTTTATTAATTTTGTAGTCATAATCAAAAAATAATATATGt           <  2:553169/141‑1 (MQ=255)
                                                                                                                                   tggtgttgAATCAACACAACAACTAAAAGTGTTTATAAATTATTTGGAAATACACATATTTGTAAATGATTAGTATCGATTTAATATCGTATTATTAAATTTTTATTAATTTTGTAGTCTTAATCAAAAAATAATATATGt           >  1:160713/3‑141 (MQ=255)
                                                                                                                                   tggtgttgAATCAACACAACAACTAAAAGTGTTTATAAATTATTTGGAAATACACATATTTGTAAATGATTAGTATCGATTTAATATCGTATTATTAAATTTTTATTAATGTTGTAGTCTTAATCAAAAAATAATATATGt           >  1:364183/3‑141 (MQ=255)
                                                                                                                                    tgtgttgATTCAACACCACAACTAAAAGTGTTTATAAATTATTTGGAAATACACATATTTGTAAATGATTAGTATCGATTTAATATCGTATTATTAAATTTTTATTAATTTTGTAGTCTTAATCAAAAAATAATATATGTc          >  2:1033710/1‑141 (MQ=255)
                                                                                                                                     gtgttgATTCAACACCACAACTAAAAGTGTTTATAAATTATTTGGAAATACACATATTTGTAAATGATTAGTATCGATTTAATATCGTATTATTAAATTTTTATTAATTTTGTAGTCTTAATCAAAAAATAATATATGTCa         <  2:1643790/141‑1 (MQ=255)
                                                                                                                                      aataaaTTCAACACCAAAACTAAAATTGTTTATAAATTATTTGAAAATACAAATATTTGTAAATGATTAGTATCGATTTAATATCGTATTATTAAATTTTTATTAATTTTGTAGTCTTAATCAAAAAATAATATATGTCAt        <  1:531295/136‑1 (MQ=255)
                                                                                                                                        tttaTTAAACACAACAAATAAAAGTGTTTATAAATTATTTGGAAATACACATATTTGTAAATGATTAGTATCGATTTAATATCGTATTATTAAATTTTTATTAATTTTGTAAAAAAAAAAAAAAAATAATATATGTCATGt      <  2:1164506/138‑1 (MQ=255)
                                                                                                                                        ttgATTCAACACCACAACTAAAAGTGTTTATAAATTATTTGGAAATACACATATTTGTAAATGATTAGTATCGATTTAATATCGTATTATTAAATTTTTATTAATTTTGTAGTCTTAATCAAAAAATAATATATGTCATGt      >  1:1063534/1‑141 (MQ=255)
                                                                                                                                        ttgATTCAACACCACAACTAAAAGTGTTTATAAATTATTTGGAAATACACATATTTGTAAATGATTAGTATCGATTTAATATCGTATTATTAAATTTTTATTAATTTTGTAGTCTTAATCAAAAAATAATATATGTCATGt      <  2:279834/141‑1 (MQ=255)
                                                                                                                                        ttgATTCAACACAACAACTAAAAGTGTTTATTAAGTTTCTCAGAGTACAGATGGTTGTAAATGAGTTGTAGTTATTTAATATCGTATTATTAAATTTTTATTAATTTTGTAGTCTTAATCAAAAAATAATATATGTCATGt      <  1:1073582/141‑1 (MQ=255)
                                                                                                                                           aTTCAACACCACAACTAAAAGTGTTTATAAATTATTTGGAAATACACATATTTGTAAATGATTAGTATCGATTTAATATCGTATTATTAAATTTTTATTAATTTTGTAGTCTTAATCAAAAAATAATATATGTCATGTtat   <  1:387215/141‑1 (MQ=255)
                                                                                                                                            ttCAACACCACAACTAAAAGTGTTTATAAATTATTTGGAAATACACATATTTGTAAATGATTAGTATCGATTTAATATCGTATTATTAAATTTTTATTAATTTTGTAGTCTTAATCAAAAAATAATATATGTCATGTtata  >  2:205664/1‑141 (MQ=255)
                                                                                                                                            |                                                                                                                                            
ATTTTAATTTAGAAAAATCTGAAAACTTACTATAATTGTATAGTTTGAATTATTTTCATACCAATACAAATTAACTAATTATATATAGATTGAAACTATATTACTTAATAAAATATTTATCTTAAATGTTGTTGTGTTGATTCAACACCACAACTAAAAGTGTTTATAAATTATTTGGAAATACACATATTTGTAAATGATTAGTATCGATTTAATATCGTATTATTAAATTTTTATTAATTTTGTAGTCTTAATCAAAAAATAATATATGTCATGTTATA  >  CP000730/371966‑372246

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: