Predicted mutation
evidence seq id position mutation freq annotation gene description
RA CP000730 614,172 T→C 8.4% S828S (AGT→AGC sdrC → Ser‑Asp rich fibrinogen/bone sialoprotein‑binding protein SdrC

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP000730614,1720TC 8.4% 382.8 / 10.6 153S828S (AGT→AGCsdrCSer‑Asp rich fibrinogen/bone sialoprotein‑binding protein SdrC
Reads supporting (aligned to +/- strand):  ref base T (66/68);  new base C (2/12);  total (68/85)
Fisher's exact test for biased strand distribution p-value = 2.12e-02
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 157 total aligned reads displayed.

TCGGATAGCGACTCAGACTCAGATAGCGATTCAGATTCAGATAGCGATTCGGACTCAGACAGTGATTCAGATTCAGACTCAGATAGCGACTCAGATTCTGACAGCGATTCAGACTCAGACAGCGACTCAGACTCAGACAGTGATTCAGATTCAGACAGCGACTCAGATTCAGATAGCGACTCAGACTCAGATAGCGACTCAGACTCAGATAGCGACTCAGACTCGGATAGCGATTCAGATTCAGACAGCGACTCAGATTCAGATAGCGATTCGGACTCAGA  >  CP000730/614032‑614312
                                                                                                                                            |                                                                                                                                            
tCGGATAGCGACTCAGACTCAGATAGCGATTCAGATTCAGATAGCGATTCGGACTCAGACAGTGATTCAGATTCAGACTCAGATAGCGACTCAGATTCTGACAGCGATTCAGACTCAGACAGCGACTCAGACTCAGACAGt                                                                                                                                              >  1:50192/1‑141 (MQ=255)
 cGGATAGCGACTCAGACTCAGATAGCGATTCAGATTCAGATAGCGATTCGGACTCAGACAGTGATTCAGATTCAGACTCAGATAGCGACTCAGATTCTGACAGCGATTCAGACTCAGACAGCGACTCAGACTCAGACAGTg                                                                                                                                             >  1:1496072/1‑141 (MQ=255)
   gATAGCGACTCAGACTCAGATAGCGATTCAGATTCAGATAGCGATTCGGACTCAGACAGTGATTCAGATTCAGACTCAGATAGCGACTCAGATTCTGACAGCGATTCAGACTCAGACAGCGGCTCGGACTCGGATAGTgat                                                                                                                                           >  2:30177/1‑141 (MQ=255)
   gATAGCGACTCAGACTCAGATAGCGATTCAGATTCAGATAGCGACTCAGACTCAGACAGTGATTCAGATTCAGACTCAGATAGCGACTCAGATTCTGACAGCGATTCAGACTCAGACAGCGACTCAGACTCAGACAGTgat                                                                                                                                           >  2:561741/1‑141 (MQ=255)
     tAGCGACTCAGACTCAGATAGCGATTCAGATTCCGATAGCGATTCGGACTCAGACAGTGATTCAGATTCAGACTCAGATAGCGACTCAGATTCTGACAGCGATTCAGACTCAGACAGCGACTCAGACTCAGACAGTgattc                                                                                                                                         <  1:1289625/141‑1 (MQ=255)
     tAGCGACTCAGACTCAGATAGCGATTCAGATTCAGATAGCGATTCGGACTCAGACAGTGATTCAGATTCAGACTCAGATAGCGACTCAGATTCTGACAGCGATTCAGACTCAGACAGCGACTCAGACTCAGACAGTgattc                                                                                                                                         <  1:670510/141‑1 (MQ=255)
     tAGCGACTCAGACTCAGATAGCGATTCAGATTCAGATAGCGATTCGGACTCAGACAGTGATTCAGATTCAGACTCAGATAGCGACTCAGATTCTGACAGCGATTCAGACTCAGACAGCGACTCAGACTCAGACAGTgattc                                                                                                                                         >  1:390243/1‑141 (MQ=255)
        cGACTCAGACTCAGATAGCGATTCAGATTCAGATAGCGATTCGGACTCAGACAGTGATTCAGATTCAGACTCAGATAGCGACTCAGATTCTGACAGCGATTCAGACTCAGACAGCGACTCAGACTCAGACAGTgattcaga                                                                                                                                      <  2:1042780/141‑1 (MQ=255)
           ctccgccacacaacgcgcTTCAGATCCAGATTTCGATCCTGACAAAGACTGCGACTCAGATTCAGACTCAGATAGCGACTCAGATTCTGACAGCGATTCAGACTCAGACAGCGACTCAGACTCAGACAGTgattcagattc                                                                                                                                   <  2:1616392/127‑1 (MQ=17)
           ctcagactcagaTAGCGATTCAGATTCAGATAGCGACTCGGACTCAGACAGCGACTCAGATTCAGACACAGATAGCGACTCAGATTCTGACAGAGACTCAGACTCAGACACCGACTCAGACTCAGACAGCgagtcagattc                                                                                                                                   >  2:1359363/1‑141 (MQ=18)
             cagactcagaTAGCGATTCAGATTCAGATAGCGATTCGGACTCAGACACTGATACCGACTCAGACTCAGATAGCGACTCAGATTCTGACAGCGATTCAGACTCAGACAGCGACTCAGACTCAGACAGTGattcagattcag                                                                                                                                 <  2:113084/141‑1 (MQ=255)
                actcagaTAGCGATTCAGATTCAGATAGCGATTCGGACTCAGACAGTGATTCAGATTCAGACTCAGATAGCGACTCAGATTCTGACAGCGATTCAGACTCAGACAGCGACTCAGACTCAGACAGTGATTCAGATTCAGACa                                                                                                                              <  1:1541423/141‑1 (MQ=255)
                actcagaTAGCGATTCAGATTCAGATAGCAATTCGGACTCAGACAGTGATTCAGATTCAGACTCAGATAGCGACTCAGATTCTGACAGCGATTCAGACTCAGACAGCGACTCAGACTCAGACAGTGATTCAGATTCAGACa                                                                                                                              <  1:1208164/141‑1 (MQ=255)
                  tcagaTAGCGATTCAGATTCAGATAGCGATTCGGACTCAGACAGTGATTCAGATTCAGACTCAGATAGCGACTCAGATTCTGACAGCGATTCAGACTCAGACAGCGACTCAGACTCAGACAGTGATTCAGATTCAGACAGc                                                                                                                            >  2:1333245/1‑141 (MQ=255)
                   cagaTAGCGATTCAGATTCAGATAGCGATTCGGACTCAGACAGTGATTCAGATTCAGACTCAGATAGCGACTCAGATTCAGACAGCGAT‑‑‑‑‑‑TCAGACAGCGACTCAGACTCAGATAGCgattcaga                                                                                                                                      <  1:210126/124‑1 (MQ=17)
                   cagaTAGCGATTCAGATTCAGATAGCGATTCGGACTCAGACAGTGATTCAGATTCAGACTCAGATAGCGACTCAGATTCAGACAGCGAT‑‑‑‑‑‑TCAGACAGCGACTCAGACTCAGATAGCgattcaga                                                                                                                                      >  2:210126/1‑124 (MQ=17)
                    agaTAGCGATTCAGATTCAGATAGCGATTCGGACTCAGACAGTGATTCAGATTCAGACTCAGATAGCGACTCAGATTCTGACAGCGATTCAGACTCAGACAGCGACTCAGACTCAGACAGTGATTCAGATTCAGACAGCGa                                                                                                                          <  1:572489/141‑1 (MQ=255)
                         gCGATTCAGATTCAGATAGCGATTCGGACTCAGACAGTGATTCAGATTCAGACTCAGATAGCGACTCAGATTCTGACAGCGATTCAGACTCAGACAGCGACTCAGACTCAGACAGTGATTCAGATTCAGACAGCGACtcag                                                                                                                     >  2:1612869/1‑141 (MQ=255)
                           gattcagattcaGATAGCGATTCGGACTCAGACAGTGATTCAGATTCAGACTCAGATAGCGACTCAGATTCTGACAGCGATTCAGACTCAGACAGCGACTCAGACTCAGACAGTGATTCAGATTCAGACAGCGACtcagat                                                                                                                   <  1:1447047/141‑1 (MQ=255)
                           gattcagattcaGATAGCGATTCGGACTCAGACAGTGATTCAGATTCAGACTCAGATAGCGACTCAGATTCTGACAGCCGATCGTACTCAGACAGCGACTCAGACTCAGACAGTGATTCAGATTCAGACAGCGACtcagat                                                                                                                   >  1:449704/1‑141 (MQ=25)
                                   ttcagatAGCGATTCGGACTCAGACAGTGATTCAGATTCAGACTCAGATAGCGACTCAGATTCTGACAGCGATTCAGACTCAGACAGCGACTCAGACTCAGACAGTGATTCAGATTCAGACAGCGACTCAGATtcagatag                                                                                                           >  1:888324/1‑141 (MQ=255)
                                     cagatAGCGATTCGGACTCAGACAGTGATTCAGATTCAGACTCAGATAGCGACTCAGATTCTGACAGCGATTCAGACTCCGACAGCTTCTCAGACTCAGACAGTGATTCAGATTCAGACAGCGACTCAGATtcagatagcg                                                                                                         >  1:104240/1‑141 (MQ=255)
                                         tAGCGATTCGGACTCAGACAGTGATTCAGATTCAGACTCAGATAGCGACTCAGATTCTGACAGCGATTCAGACTCAGACAGCGACTCAGACTCAGACAGTGATTCAGATTCAGACAGCGACTCAGATtcagatagcgactc                                                                                                     <  2:390243/141‑1 (MQ=255)
                                           gCGATTCGGACTCAGACAGTGATTCAGATTCAGACTCAGATAGCGACTCAGATTCAGACAGAGATACAGACTCAGACAGCGACTCAGACTCAGACAGTGATTCAGATGCAGACAGCGACTCAGATtcagatagcgactcag                                                                                                   >  2:504134/1‑141 (MQ=255)
                                            cGATTCGGACTCAGACAGTGATTCAGATTCAGACTCAGATAGCGACTCAGATTCTGACAGCGATTCAGACTCAGACAGCGACTCAGACTCAGACAGTGATTCAGATTCAGACAGc                                                                                                                            >  2:977318/1‑115 (MQ=255)
                                            cGATTCGGACTCAGACAGTGATTCAGATTCAGACTCAGATAGCGACTCAGATTCTGACAGCGATTCAGACTCAGACAGCGACTCAGACTCAGACAGTGATTCAGATTCAGACAGc                                                                                                                            <  1:977318/115‑1 (MQ=255)
                                             gATTCGGACTCAGACAGAGATTCAGATTCAGACTCAGATAGCGACTCAGATTCTGACAGCGATTCAGACTCAGACAGCGACTCAGACTCAGACAGCGATTCAGATTCAGACAGCGACTCAGATtcagatagcgactcagac                                                                                                 <  2:1459289/141‑1 (MQ=255)
                                               ttCGGACTCAGACAGTGATTCAGATTCAGACTCAGATAGCGACTCAGATTCTGACAGCGATTCAGACTCAGACAGCGACTCAGACTCAGACAGTGATTCAGATTCAGACAGCGACTCAGATtcagatagcgactcagactc                                                                                               <  1:1612869/141‑1 (MQ=255)
                                                tcagACACAGATAGTGACTCAGACTAAGACGCAGAAAGAGATTCAGATTCAGACAGCGATTCAGACTCAGACAGCGACTCAGACTCAGACAGTGATTCAGATTCAGACAGCGACTCAGATtcagatagcgactcagactca                                                                                              <  2:1194536/138‑1 (MQ=14)
                                                   gACTCAGACAGTGATTCAGATTCAGACTCAGATAGCGACTCAGATTCTGACAGCGATTCAGACTCAGACAGCGACTCAGACTCAGACAGTGATTCAGATTCAGACAGCGACTCAGATtcagatagcgactcagactcagat                                                                                           >  1:1130454/1‑141 (MQ=255)
                                                   gACTCAGACAGTGATTCAGATTCAGACTCAGATAGCGACTCAGATTCTGACAGCGATTCAGACTCAGACAGCGACTCAGACTCAGACAGTGATTCAGATTCAGACAGCGACTCAGATtcagatagcgactcagactcagat                                                                                           >  1:999753/1‑141 (MQ=255)
                                                   gACTCAGACAGTGATTCAGATTCAGACTCAGATAGCGACTCAGATTCTGACAGCGATTCAGACTCAGACAGCGACTCAGACTCAGACAGTGATTCAGATTCAGACAGCGACTCAGATtcagatagcgactcagactcagat                                                                                           >  1:999690/1‑141 (MQ=255)
                                                   gACTCAGACAGTGATTCAGATTCAGACTCAGATAGCGACTCAGATTCTGACAGCGATTCAGACTCAGACAGCGACTCAGACTCAGACAGTGATTCAGATTCAGACAGCGACTCAGATtcagatagcgactcagactcagat                                                                                           <  1:1199158/141‑1 (MQ=255)
                                                   gACTCAGACAGTGATTCAGATTCAGACTCAGATAGCGACTCAGATTCTGACAGCGATTCAGACTCAGACAGCGACTCAGACTCAGACAGTGATTCAGATTCAGACAGCGACTCAGATtcagatagcgactcagactcagat                                                                                           <  1:849263/141‑1 (MQ=255)
                                                    aCTCAGACAGTGATTCAGATTCAGACTCAGATAGCGACTCAGATTCTGACAGCGATTCAGACTCAGACAGCGACTCAGACTCAGACAGTGATTCAGATTCAGACAGCGACTCAGATtcagatagcgactcagactcagata                                                                                          >  1:1589756/1‑141 (MQ=255)
                                                     cTCAGACAGTGATTCAGATTCAGACTCAGATAGCGACTCAGATTCTGACAGCGATTCAGACTCAGACAGCGACTCAGACCCAGACAGTGATTCAGATTCAGACAGCGACTCAGATtcagatagcgactcagactcagatag                                                                                         <  2:723346/141‑1 (MQ=255)
                                                      acAGACAGTGATTCAGATTCAGACTCAGATACCGACTCAGATTCTGACAGCGACTCAGACTCAGACAGCGACTCAGACTCAGACAGTGATTCAGATTCAGACAGCGACTCAGATtcagatagcgactcagactcagatagc                                                                                        <  2:649252/140‑1 (MQ=255)
                                                        aGACAGTGATTCAGATTCAGACTCAGATAGCGACTCAGATTCTGACAGCGATTCAGACTCAGACAGCGACTCAGACTCAGACAGTGATTCAGATTCAGACAGCGACTCAGATtcagatagcgactcagactcagatagcga                                                                                      >  1:479401/1‑141 (MQ=255)
                                                        aGACAGTGATTCAGATTCAGACTCAGATAGCGACTCAGATTCTGACAGCGATTCAGACTCAGACAGCGACTCAGACTCAGACAGTGATTCAGATTCAGACAGCGACTCAGATtcagatagcgactcagactcagatagcga                                                                                      >  1:682422/1‑141 (MQ=255)
                                                         gACAGTGCTTCCGATTCAGACTCAGATAGCGACTCAGATTCGGACAGCGACTCAGACTCAGACAGCGACTCAGACTCAGACAGTGATTCAGATTCAGACAGCGACTCAGATtcagatagcgactcagactcagatagcgac                                                                                     <  2:611517/141‑1 (MQ=255)
                                                         gACAGTGATTCAGATTCAGACTCAGATAGCGACTCAGATTCTGACAGCGATTCAGACTCAGACAGCGACTCAGACTCAGACAGTGATTCAGATTCAGACAGCGACTCAGATtcaggtagcgactcagactcagatagcgac                                                                                     <  1:1146740/141‑1 (MQ=255)
                                                         gACAGTGATTCAGATTCAGACTCAGATAGCGACTCAGATTCTGACAGCGATTCAGACTCAGACAGCGACTCAGACTCAGACAGTGATTCAGATTCAGACAGCGACTCAGATtcagatagcgactcagactcagatagcgac                                                                                     <  2:1291621/141‑1 (MQ=255)
                                                            ggTGATTCAGATTCAGACGCAGAGAGCGACTCAGATTCTGACAGCGATTCAGGCTCAGACAGCGACTCAGGCTCAGACAGTGATTCAGATTCAGACAGCGACTCAGATtcagatagcgactcagactcagatagcgactca                                                                                  <  1:973606/140‑1 (MQ=255)
                                                             ctGATTCAGATCCAGACTCCGATAGCGACTCAGATTCCGACAGCGATTCAGACTCAGACAGCGACTCAGACTCAGACAGCGATTCAGATTCAGACAGCGACTCAGATtcagatagcgactcagactcagatagcgactcag                                                                                 <  2:1185340/140‑1 (MQ=255)
                                                               gattcagattcaGACTCAGATAGCGACTCAGATTCTGACAGCGATTCAGACTCAGACAGCGACTCAGACTCAGACAGTGTTTCAGATTCAGACAGCGACTCAGATtcagatagcgactcagactcagatagcgactcagac                                                                               >  2:1151541/1‑141 (MQ=255)
                                                                 ttcagattccgaCTCAGATACCGACTCAGATTCAGACACCGATTCAGAATCCGACAGCGACTCAGACTCAGACAGCGATTCAGATTCAGACAGCGACTCAGACtcagatagcgactcagactcagatagcgactcagactc                                                                             <  2:1411794/141‑1 (MQ=14)
                                                                   cagattcagaCTCAGATAGCGACTCAGATTCTGACAGCGATTCAGACTCAGACAGCGACTCAGACTCAGACAGTGATTCAGATTCAGACAGCGACTCAGATtcagatagcgactcagactcagatagcgactcagactcag                                                                           >  2:680179/1‑141 (MQ=255)
                                                                   cagattcagaCTCAGATAGCGACTCAGATTCTGACAGCGATTCAGACTCAGACAGCGACTCAGACTCAGACAGTGATTCAGATTCAGACAGCGACTCAGATtcagatagcgactcagactcagatagcgactcagactcag                                                                           >  1:5471/1‑141 (MQ=255)
                                                                     gattcagaCTCAGATAGCGACTCAGATTCTGACAGCGATTCAGACTCAGACAGCGACTCAGACTCAGACAGTGATTCAGATTCAGACAGCGACTCAGATtcagatagcgactcagactcagatagcgactcagactcagat                                                                         >  1:1265893/1‑141 (MQ=255)
                                                                       ctcagaCTCAGATACCGACTCAGATTCTGACTGTGATTCAGACTCAGACAGCGACCCAGACTCAGACACGGACTCAGACTCAGACAGCGACTCAGACtcagacagcgactcagactcagatagcgactcagactcagatag                                                                       <  2:597685/140‑1 (MQ=14)
                                                                            aCTCAGATAGCGACTCAGATTCTGACAGCGATTCAGACTCAGACAGCGACTCAGACTCAGACAGTGATTCAGATTCAGACAGCGACTCAGATtcagatagcgactcagactcagatagcgactcagactcagatagcgact                                                                  >  1:1651222/1‑141 (MQ=255)
                                                                             cTCAGATAGCGACTCAGATTCTGACAGCGATTCAGACTCAGACAGCGACTCAGACTCAGACAGTGATTCAGATTCAGACAGCGACTCAGATtcagatagcgactcagactcagatagcgactcagactcagatagcgactc                                                                 >  1:283139/1‑141 (MQ=255)
                                                                               cAGATAGCGACTCAGATTCTGACAGCGATTCAGACTCAGACAGCGACTCAGACTCAGACAGTGATTCAGATTCAGACAGCGACTCAGATtcagatagcgactcagactcagatagcgactcagactcagatagcgactcag                                                               >  2:1250262/1‑141 (MQ=255)
                                                                               cAGATAGCGACTCAGATTCTGACAGCGATTCAGACTCAGACAGCGACTCAGACTCAGACAGTGATTCAGATTCAGACAGCGACTCAGATtcagatagcgactcagactcagatagcgactcagactcagatagcgactcag                                                               <  1:1232033/141‑1 (MQ=255)
                                                                                 gacaGCGACTCAGACTCTGACACCAATTCAGACTCAGACAGCGACTCAGACTCAGACAGTGATTCAGACTCAGACAGCGACTCAGATtcagatagcgactcagactcagatagcgactcagactcagatagcgactcagac                                                             <  2:1216686/138‑1 (MQ=17)
                                                                                   tAGCGACTCAGATTCTGACAGCGATTCAGACTCGGACAGCGACTCAGACTCAGACAGCGATTCAGATTCAGACAGCGACTCAGATTCagatagcgactcagactcagatagcgactcagactcagatagcgactcagactc                                                           <  2:421645/141‑1 (MQ=255)
                                                                                   tAGCGACTCAGATTCTGACAGCGATTCAGACTCAGACAGCGACTCAGACTCAGACAGTGATTCAGATTCAGACAGCGACTCAGATTCagatagcgactcagactcagatagcgactcagactcagatagcgactcagactc                                                           >  1:992432/1‑141 (MQ=255)
                                                                                    aGCGACTCAGATTCTGACAGCGATTCAGACTCAGACAGCGACTCAGACTCAGACAGTGATTCAGATTCAGACAGCGACTCAGATTCAGATAGCGACTCAGACTCAGATAGCGACTCAGACTCAGATAGCGACTCAGACTCg                                                          <  1:1266035/141‑1 (MQ=255)
                                                                                     gCGACTCAGATTCTGACAGCGATTCAGACTCAGACAGCGACTCAGACTCAGACAGTGATTCAGATTCAGACAGCGACTCAGATTCAGATAGCGACTCAGACTCAGATAGCGACTCAGACTCAGATAGCGACTCAGACTCgg                                                         >  1:840035/1‑141 (MQ=255)
                                                                                       gACTCAGACTCTGACAGAGATTCAGACTCAGACAGCGACTCAGACTCAGACAGAGATTCAGATTCAGACAGCGACTCAGACTCAGATAGCGACTCAGACTCAGATAGCGACTCAGACTCAGATAGCGACTCAGACTCGGAt                                                       <  2:804660/141‑1 (MQ=255)
                                                                                         cccAGATTCTGCCTGCGATCCAGACTCAGACAGCGACTCAGCCTCAGACAGCGACTCAGATTCAGACAGCGACTCAGATTCAGATAGCGACTCAGACTCAGATAGCGACTCAGACTCAGATAGCGACTCAGACTCGGATAg                                                     <  2:283610/139‑1 (MQ=17)
                                                                                            aGATTCTGACAGCGATTCAGACTCAGACAGCGACTCAGACTCAGACAGCGATTCAGATTCAGACAGCGACTCAGATTCAGATAGCGACTCAGACTCAGATAGCGACTCAGACTCAGATAGCGACTCAGACTCGGATAGCga                                                  <  2:459894/141‑1 (MQ=255)
                                                                                                   gACAGCGATTCAGACTCAGACAGCGACTCAGACTCAGACAGTGATTCAGATTCAGACAGCGACTCAGATTCAGATAGCGACTCAGACTCAGATAGCGACTCAGACTCAGATAGCGACTCAGACTCGGATAGCgattcagat                                           >  1:1032500/1‑141 (MQ=255)
                                                                                                   gACAGCGATTCAGACTCAGACAGCGACTCAGACTCAGACAGTGATTCAGATTCAGACAGCGACTCAGATTCAGATAGCGACTCAGACTCAGATAGCGACTCAGACTCAGATAGCGACTCAGACTCGGATAGCgattcagat                                           >  1:803471/1‑141 (MQ=255)
                                                                                                     cAGCGATTCAGACTCAGACAGCGACTCAGACTCAGACAGTGATTCAGATTCAGACAGCGACTCAGATTCAGATAGCGACTCAGACTCAGATAGCGACTCAGACTCAGATAGCGACTCAGACTCGGATAGCgattcagattc                                         <  1:169777/141‑1 (MQ=255)
                                                                                                     cAGCGATTCAGACTCAGACAGCGACTCAGACTCAGACAGTGATTCAGATTCAGACAGCGACTCAGATTCAGATAGCGACTCAGACTCAGATAGCGACTCAGACTCAGATAGCGACTCAGACTCGGATAGCgattcagattc                                         <  1:561741/141‑1 (MQ=255)
                                                                                                      aGCGATTCAGACTCAGACAGCGACTCAGACTCAGACAGTg                                                                                                                                             <  1:147143/40‑1 (MQ=37)
                                                                                                      aGCGATTCAGACTCAGACAGCGACTCAGACTCAGACAGTg                                                                                                                                             >  2:147143/1‑40 (MQ=37)
                                                                                                      aGCGATTCAGACTCAGACAGCGACTCAGACTCAGACAGTGATTCAGATTCAGACAGCGACTCAGATTCAGATAGCGACTCAGACTCAGATAGCGACTCAGACTCAGATAGCGACTCAGACTCGGATAGCgattcagattca                                        >  2:1431558/1‑141 (MQ=255)
                                                                                                       gCGATTCAGACTCAGACAGCGACTCAGACTCAGACAGTGATTCAGATTCAGAc                                                                                                                               <  1:135770/53‑1 (MQ=38)
                                                                                                        cgcttCAGACTCAGACACCGCCACAGCCTCAGACAGCGATTCAGATTCCGACAGCGCCTCAGACGCAGATAGCGACTCAGACTCAGATAGCGACTCAGACTCAGATAGCGACTCAGACTCGGATAGCGAttcagattcaga                                      <  2:1038063/138‑1 (MQ=17)
                                                                                                        ccgttCAGACTCAGACCGAGACTCAGACGCTCACAGCGATTCAGATTCAGACAGCGGCTCAGATTCAGACAGCGATTCAGACTCAGATAGCGACTCAGACTCAGATAGCGACTCAGACTCGGATAGCGAttcagattcaga                                      <  2:1377175/138‑1 (MQ=14)
                                                                                                           ttCAGACTCAGACAGCGACTCAGACTCAGACAGTGATTCAGATTCAGACAGCGACTCAGATTCAGATAGCGACTCAGACTCAGATAGCGACTCAGACTCAGATAGCGACTCAGACTCGGATAGCGATTCAGATTCAGACAg                                   <  1:323447/141‑1 (MQ=255)
                                                                                                              agactcagacAGCGACTCAGACTCAGACAGTGATTCAGATTCAGACAGCGACTCAGATTCAGATAGCGACTCAGACTCAGATAGCGACTCAGACTCAGATAGCGACTCAGACTCGGATAGCGATTCAGATTCAGACAGCGa                                <  1:1432379/141‑1 (MQ=255)
                                                                                                               gactcagacAGCGACTCAGACTCAGACAGTGATTCAGATTCAGACAGCGACTCAGATTCAGATAGCGACTCAGACTCAGATAGCGACTCAGACTCAGATAGCGACTCAGACTCGGATAGCGATTCAGATTCAGACAGCGAc                               >  1:847415/1‑141 (MQ=255)
                                                                                                               gactcagacAGCGACTCAGACTCAGACAGTGATTCAGATTCAGACAGCGACTCAGATTCAGATAGCGACTCAGACTCAGATAGCGACTCAGACTCAGATAGCGACTCAGACTCGGATAGCGATTCAGATTCAGACAGCGAc                               <  2:1507847/141‑1 (MQ=255)
                                                                                                                 ctcagacAGTGACTCAGACTCAGACAGTGATTCAGATTCAGACAGCGACTCAGATTCAGATAGCGACTCAGACTCAGATAGCGACTCAGACTCAGATAGCGACTCAGACTCGGATAGCGATTCAGATTCAGACAGCGACtc                             >  1:1542785/1‑141 (MQ=255)
                                                                                                                  tcagacAGCGACTCAGACTCAGACAGTGATTCAGATTCAGACAGCGACTCAGATTCAGATAGCGACTCAGACTCAGATAGCGACTCAGACTCAGATAGCGACTCAGACTCAGACAGTGATTCAGATTCAGACAGCGACtca                            >  1:786674/1‑141 (MQ=255)
                                                                                                                  accgacacagccacagattcacatAATGAATCAGACTCAGACAGCGACCCAGACTCCGAAAGCGACTCAGACTCAGATAGCGACTCAGACTCAGATAGCGACTCAGACTCTGATAGCGATTCAGATTCAGACAGCGACtca                            <  2:1595587/128‑1 (MQ=14)
                                                                                                                    agacAGCGACTCAGACTCAGACAGTGATTCAGATTCAGACAGCGACTCAGATTCAGGTAGCGACTCAGGCTCAGATAGCGACTCAGACTCAGATAGCGACTCAGACTCGGATAGCGATTCAGATTCAGACAGCGACtcaga                          <  1:902075/141‑1 (MQ=255)
                                                                                                                    agacAGCGACTCAGACTCAGACAGTGATTCAGATTCAGACAGCGACTCAGATTCAGATAGCGACTCAGACTCAGATAGCGACTCAGACTCAGATAGCGACTCAGACTCGGATAGCGATTCAGATTCAGACAGCGACtcaga                          <  1:307926/141‑1 (MQ=255)
                                                                                                                    agacAGCGACTCAGACTCAGACAGTGATTCAGATTCAGACAGCGACTCAGATTCAGATAGCGACTCAGACTCAGATAGCGACTCAGACTCAGATAGCGACTCAGACTCGGATAGCGATTCAGATTCAGACAGCGACtcaga                          <  1:1093832/141‑1 (MQ=255)
                                                                                                                         gCGACTCAGACTCAGACAGTGATTCAGATTCAGACAGCGACTCAGATTCAGATAGCGACTCAGACTCAGATAGCGACTCAGACTCAGATAGCGACTCAGACTCGGATAGCGATTCAGATTCAGACAGCGACtcagattcag                     >  2:36960/1‑141 (MQ=255)
                                                                                                                          cgactccttctctcacacTGACTCAGACTCCGACCGAGACTCAGACTCTGACAGCGACTCAGACTCAGATAGCGACTCAGACTCAGATAGCGACTCAGACTCGGATAGCGATTCAGATTCAGACAGCGACtcagattcaga                    <  2:749075/127‑1 (MQ=14)
                                                                                                                          cGACTGACACTCAGACAGTGACTCAGACTCAAACAGAGACTCAGACTCAGACAGCGACTCAGACTCAGATAGCGACTCAGACTCAGATAGCGACTCAGACTCGGATAGCGATTCAGATTCAGACAGCGACtcagattcaga                    <  2:797560/141‑1 (MQ=14)
                                                                                                                          cGACTCAGACTCACACAGTGACTCAGACTCAGACAGCGACTCAGACTCAGACAGCGACTCAGACTCAGACAGCGACTCAGACTCAGATAGCGACTCAGACTCGGATAGCGATTCAGATTCAGACAGCGACtcagattcaga                    <  2:850053/141‑1 (MQ=11)
                                                                                                                           gactcagactcaGACAGTGATTCAGATTCAGACAGCGACTCAGATTCAGATAGCGACTCAGACTCAGATAGCGACTCAGACTCAGATAGCGACTCAGACTCGGATAGCGATTCAGATTCAGACAGCGACtcagattcagat                   >  1:1529280/1‑141 (MQ=255)
                                                                                                                              tcagactcagacAGTGATTCAGATTCAGACAGCGACTCAGATTCAGATAGCGACTCAGACTCAGATAGCGACTCAGACTCAGATAGCGACTCAGACTCGGATAGCGATTCAGATTCAGACAGCGACTCAGATTCAGATAGc                >  1:132494/1‑141 (MQ=255)
                                                                                                                              tcagactcagacAGTGATTCAGATTCAGACAGCGACTCAGATTCAGATAGCGACTCAGACTCAGATAGCGACTCAGACTCAGATAGCGACTCAGACTCGGATAGCGATTCAGATTCAGACAGCGACTCAGATTCAGATAGc                >  2:1139624/1‑141 (MQ=255)
                                                                                                                                agactcagacAGTGATTCAGATTCAGACAGCGACTCAGATtcagatagcgactcagactcagatagcgactcagactcagatagcga                                                                    >  2:1236387/1‑87 (MQ=255)
                                                                                                                                agactcagacAGTGATTCAGATTCAGACAGCGACTCAGATTCAGATAGCGACTCAGACTCAGATAGCGACTCAGACTCAGATAGCGACTCAGACTCGGATAGCGATTCAGATTCAGACAGCGACTCAGATTCAGATAGCGa              <  1:1344909/141‑1 (MQ=255)
                                                                                                                                 gactcagacAGTGATTCAGATTCAGACAGCGACTCAGATTCAGATAGCGACTCAGCCTCAGATAGCGACTCAGACTCAGATAGCGACTCAGACTCGGATAGCGATTCAGATTCAGAAAGCGACTCAGATTCAGATAGCGAt             >  2:561691/1‑141 (MQ=255)
                                                                                                                                 gactcagacAGTGATTCAGATTCAGACAGCGACTCAGATTCAGATAGCGACTCAGACTCAGATAGCGACTCAGACTCAGATAGTCACGCAGACTCGGATAGCGATTCAGATTCAGACAGCGACTCAGATTCAGATAGCGAt             >  1:1606197/1‑141 (MQ=255)
                                                                                                                                 gactcagacAGTGATTCAGATTCAGACAGCGACTCAGATTCAGATAGCGACTCAGACTCAGATAGCGACTCAGACTCAGATAGCGACTCAGACTCGGATAGCGATTCAGATTCAGACAGCGACTCAGATTCAGATAGCGAt             >  1:1598128/1‑141 (MQ=255)
                                                                                                                                      agacAGTGATTCAGATTCAGACAGCGACTCAGATTCAGATAGCGACTCAGACTCAGATAGCGACTCAGACTCAGATAGCGGCTCTGCCTCGGATAGCGCTTCAGATTCAGACAGCGCCTCAGATTCAGATAGCGATTCGGa        <  2:1589756/141‑1 (MQ=14)
                                                                                                                                       gacAGTGATTCAGATTCAGACAGCGACTCAGATTCAGATAGCGACTCAGACTCAGATAGCGACTCAGACTCAGATAGCGACTCAGACTCGGATAGCGATTCAGATTCAGACAGCGACTCAGATTCAGATAGCGATTCGGAc       >  2:756906/1‑141 (MQ=255)
                                                                                                                                       gacAGAGATTCAGAGTCAGACATCGATTCAGATTCAGATAGCCACTCAGACAGGGATAGCCACGCACACTCAGATAGCGACTCAGACTCGCACAGCGATTCAGATTCAGACAGCGACTCAGATTCAGATAGCGATTcagat       <  2:832759/141‑5 (MQ=14)
                                                                                                                                         cAGTGATTCAGATTCAGACAGCGACTCAGATTCAGATAGCGACTCAGACTCAGATAGCGACTCAGACTCAGATAGCGACTCAGACTCGGATAGCGATTCAGATTCAGACAGCGACTCAGATTCAGATAGCGATTCGGACTc     >  1:1495938/1‑141 (MQ=255)
                                                                                                                                            tGATTCAGATTCAGACAGCGACTCAGATTCAGATAGCGACTCAGACTCAGATAGCGACTCAGACTCAGATAGCGACTCAGACTCGGATAGCGATTCAGATTCAGACAGCGACTCAGATTCAGATAGCGATTCGGACTCAGa  <  1:109283/141‑1 (MQ=255)
                                                                                                                                            tGATTCAGATTCAGACAGCGACTCAGATTCAGATAGCGACTCAGACTCAGATAGCGAATAATACGCAGATAGCGACTCAGACTCGGATAGCGATTCAGATTCAGACAGCGACTCAGATTCAGATAGCGATTCGGACTCAGa  <  1:30177/141‑1 (MQ=255)
                                                                                                                                            |                                                                                                                                            
TCGGATAGCGACTCAGACTCAGATAGCGATTCAGATTCAGATAGCGATTCGGACTCAGACAGTGATTCAGATTCAGACTCAGATAGCGACTCAGATTCTGACAGCGATTCAGACTCAGACAGCGACTCAGACTCAGACAGTGATTCAGATTCAGACAGCGACTCAGATTCAGATAGCGACTCAGACTCAGATAGCGACTCAGACTCAGATAGCGACTCAGACTCGGATAGCGATTCAGATTCAGACAGCGACTCAGATTCAGATAGCGATTCGGACTCAGA  >  CP000730/614032‑614312

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: