| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP000730 | 1,042,789 | T→C | 6.1% | intergenic (+19/‑903) | USA300HOU_0984 → / → USA300HOU_0985 | glycosyltransferase/possible iron (Fe3+) ABC superfamily ATP binding cassette transporter, binding protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP000730 | 1,042,789 | 0 | T | C | 6.1% | 326.3 / 10.2 | 116 | intergenic (+19/‑903) | USA300HOU_0984/USA300HOU_0985 | glycosyltransferase/possible iron (Fe3+) ABC superfamily ATP binding cassette transporter, binding protein |
| Reads supporting (aligned to +/- strand): ref base T (53/55); new base C (3/4); total (56/60) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.02e-01 | |||||||||||
Only 100 of 117 total aligned reads displayed.
TCAGCTTGTTAATAATGATGTATTAGCAGCGGAGTTTGGTTCGAAAGCGAGAGAAAACATTATAGAAAAATATTCAACGGAATCAATATTAGAAAAATGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTACGCATGATAAATACAAAAAAAGAGAGGATAGTCCTCTCAAACAATAGTTAATAAAATTGTAGCCATTTCTTCCAGCTGTAACTACTAATACAAGCTAAGTTCATTACGATATGTAT > CP000730/1042650‑1042927 | tCAGCTTGTTAATAATGATGTATTAGCAGCGGAGTTTGGTTCGAAAGCGAGAGAAAACATTATAGAAAAATATTCAACGGAATCAATATTAGAAAAATGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTAtt > 1:562337/1‑141 (MQ=255) cTTGTTAATAATGATGTATTAGCAGTGGAGTTTGGTTCGAAAGCGAGAGAAAACATTATAGAAAAATATTCAACGGAATCAATATTAAAAAAATGGTTAAATCTTTTCAATAGATAAATGAAAAAATCCTAGGTACTCATg < 1:676831/141‑1 (MQ=255) ttGTTAATAATGATGTATTAGCAGCGGAGTTTGGTTCGAAAGCGAGAGAAAACATTATAGAAAAATATTCAACGGAATCAATATTAGAAAAATGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGa < 1:442177/141‑1 (MQ=255) gTTAATAATGATGTATTAGCAGCGGAGTTTGGTTCGAAAGCGAGAGAAAACATTATAGAAAAATATTCAACGGAATCAATATTAGAAAAATGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGt < 1:1199503/141‑1 (MQ=255) gTTAATAATGATGTATTAGCAGCGGAGTTTGGTTCGAAAGCGAGAGAAAACATTATAGAAAAATATTCAACGGAATCAATATTAGAAAAATGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTACTCATGaat < 1:810485/141‑3 (MQ=255) ttAATAATGATGTATTAGCAGCGGAGTTTGGTTCGAAAGCGAGAGAAAACATTATAGAAAAATATTCAACGGAATCAATATTAGAAAAATGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTa < 1:125082/141‑1 (MQ=255) ttAATAATGATGTATTAGCAGCGGAGTTTGGTTCGAAAGCGAGAGAAAACATTATAGAAAAATATTCAACGGAATCAATATTAGAAAAATGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTa > 1:302774/1‑141 (MQ=255) aataatGATGTATTAGCAGCGGAGTTTGGTTCGAAAGCGAGAGAAAACATTATAGAAAAATATTCAACGGAATCAATATTAGAAAAATGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTAcc < 2:469196/141‑1 (MQ=255) ataatGATGTATTAGCAGCGGAGTTTGGTTCGAAAGCGAGAGAAAACATTATAGAAAAATATTCAACGGAATCAATATTAGAAAAATGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCt < 1:7644/141‑1 (MQ=255) aatGATGTATTAGCAGCGGAGTTTGGTTCGAAAGCGAGAGAAAACATTATAGAAAAATATTCAACGGAATCAATATTAGAAAAATGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAg > 1:936734/1‑141 (MQ=255) gatgTATTAGCAGCGGAGTTTGGTTCGAAAGCGAGAGAAAACATTATAGAAAAATATTCAACGGAATCAATATTAGAAAAATGGTTAAATCTTTTCAATAGCTAAATGTAAAAATCCTAGGTACTCATGAATACCTAGGAt < 1:1105699/141‑1 (MQ=255) gTATTAGCAGCGGAGTTTGGTTCGAAAGCGAGAGAAAACATTATAGAAAAATATTCAACGGAATCAATATTAGAAAAATGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGAtttt > 1:1231814/1‑141 (MQ=255) aTTAGCGGCGAATTTTGGTTGAAAAGCGGGAGAAAACATTATAGAAAAATATTCAACGGAATCAAAATAAGAAAAAGGGTTAATTCTTTTCAATGGCTAATTGAAAAAATCTTAGGTTTTCATGAGTACCTAGGTTTTTTa < 2:1079917/141‑1 (MQ=255) aTTAGCAGCGGAGTTTGGTTCGAAAGCGAGAGAAAACATTATAGAAAAATATTCAACGGAATCAATATTAGAAAAATGGTTAAATCTTTTCAATAGCTAAATGAGAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTa > 2:237959/1‑141 (MQ=255) aTTAGCAGCGGAGTTTGGTTCGAAAGCGAGAGAAAACATTATAGAAAAATATTCAACGGAATCAATATTAGAAAAATGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTa > 1:1491192/1‑141 (MQ=255) ttAGCAGCGGAGTTTGGTTCGAAAGCGAGAGAAAACATTATAGAAAAATATTCAACGGAATCAATATTAGAAAAATGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTAc > 1:1054238/1‑141 (MQ=255) ttAGCAGCGGAGTTTGGTTCGAAAGCGAGAGAAAACATTATAGAAAAATATTCAACGGAATCAATATTAGAAAAATGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTAc < 1:1330321/141‑1 (MQ=255) ttAGCAGCGGAGTTTGGTTCGAAAGCGAGAGAAAACATTATAGAAAAATATTCAACGGAATCAATATTAGAAAAATGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTAACTAAGATTTTTaa > 2:38828/1‑140 (MQ=255) agcagcGGAGTTTGGTTCGAAAGCGAGAGAAAACATTATAGAAAAATATTCAACGGAATCAATATTAGAAAAATGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTACGc > 2:460181/1‑141 (MQ=255) agcagcGGAGTTTGGTTCGAAAGCGAGAGAAAACATTATAGAAAAATATTCAACGGAATCAATATTAGAAAAATGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTACGc > 1:1079917/1‑141 (MQ=255) cGGAGTTTGGTTCGAAAGCGAGAGAAAACATTATAGAAAAATATTCAACGGAATCAATATTAGAAAAATGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTACTCATg > 2:1540306/1‑116 (MQ=255) ggAGTTTGGTTCGAAAGCGAGAGAAAACATTATAGAAAAATATTCAACGGAATCAATATTAGAAAAATGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTAcatttagct > 2:314514/1‑133 (MQ=255) ggAGTTTGGTTCGAAAGCGAGAGAAAACATTATAGAAAAATATTCAACGGAATCAATATTAGAAAAATGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTACGCATGATa > 2:70497/1‑141 (MQ=255) ggAGTTTGGTTCGAAAGCGAGAGAAAACATTATAGAAAAATATTCAACGGAATCAATATTAGAAAAATGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTACGCATGATa > 1:504687/1‑141 (MQ=255) gAGTTTGGTTCGAAAGCGAGAGAAAACATTATAGAAAAATATTCAACGGAATCAATATTAGAAAAATGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTAcatttagcta < 1:314514/141‑10 (MQ=255) gTTTGGTTCGAAAGCGAGAGAAAACATTATAGAAAAATATTCAACGGAATCAATATTAGAAAAATGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTACGCATGATAAAt < 1:1621645/141‑1 (MQ=255) gTTTGGTTCGAAAGCGAGAGAAAACATTATAGAAAAATATTCAACGGAATCAATATTAGAAAAATGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTACGCATGATAAAt < 1:274290/141‑1 (MQ=255) gTTTGGTTCGAAAGCGAGAGAAAACATTATAGAAAAATATTCAACGGAATCAATATTAGAAAAATGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTACGCATGATAAAt < 1:426906/141‑1 (MQ=255) tttGGTTCGAAAGCGAGAGAAAACATTATAGAAAAATATTCAACGGAATCAATATTAGAAAAATGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTACGCATGATaaa < 2:824739/139‑1 (MQ=255) tttGGTTCGAAAGCGAGAGAAAACATTATAGAAAAATATTCAACGGAATCAATATTAGAAAAATGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTACGCATGATaaa > 1:824739/1‑139 (MQ=255) tttGGTTCGAAAGCGAGAGAAAACATTATAGAAAAATATTCAACGGAATCAATATTAGAAAAATGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTACGCATGATAAATa > 2:1601357/1‑141 (MQ=255) tttGGTTCGAAAGCGAGAGAAAACATTATAGAAAAATATTCAACGGAATCAATATTAGAAAAATGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTACGCATGATAAATa > 1:51787/1‑141 (MQ=255) ttgggTTCGAAAGCGAGAGAAAACATTATAGAAAAATATTCAACGGAATCAATATTAGAAAAATGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTACGCATGATAAATa < 2:467014/138‑1 (MQ=255) ttGGTTCAAAAGCGAGAGAAAACATTATATAAAAACATTCAACCGAATCAATATTAGAAAAATGGTTATATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTACTCATGATAAATAc < 2:1471072/141‑1 (MQ=255) ggTTCGAAAGCGAGAGAAAACATTATAGAAAAATATTCAACGGAATCAATATTAGAAAAATGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTACGCATGATAAATACaa < 1:774509/141‑1 (MQ=255) ggTTCGAAAGCGAGAGAAAACATTATAGAAAAATATTCAACGGAAAAAATAAAAAAAAAATGGTGAAATCGTTTCAATAGCTAAATGAACAAAACCTAGGTATTCATGAGTACCTAGGATTTTTACGCATGAaaaaaaaaa < 2:512354/141‑6 (MQ=255) tcgcatgagacagaCAACATTATCGAAAAATATTCACCAGAATCAAAATTAGCAGAGTGGTTGAATTTTTTCAATAGCTAAATGAAACAAGCCTAGGGATTCATGAGGACCTAGGATTTTTACGCATGATAAATAaaaaaa < 2:968755/130‑1 (MQ=255) gAAAGCGAGAGAAAACATTATAGAAAAATATTCAACGGAATCAATATTAGAAAAATGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTACGCATGATAAATACaaaaaaa < 2:1041998/141‑1 (MQ=255) cGAGAGAAAACATTATAGAAAAATATTCAACGGAATCAATATTAGAAAAATGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTAACTAGGATTTTTACGCATGATAAATACAAAAAAagatag > 2:854529/1‑141 (MQ=255) gagagaAAACATTATAGAAAAATATTCAACGGAATAAATATTGGAAAAATGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTACGCATGATAAATACAAAAAAAGAGAgg > 1:1426605/1‑141 (MQ=255) gaAAACATTATAGAAAAATATTCAACGGAATCAATATTAGAAAAATGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTACGCATGATAAATACAAAAAAAGAGAGGATAg > 1:122448/1‑141 (MQ=255) aaaaCATAATAGAAAAATATAAAACGGAATCAATATTAGAAAAATGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTACGAAAAAAAAAAAAAAAAAAAGAGAGGATAGt < 2:1384077/141‑1 (MQ=255) aaaCATTATAGAAAAATATTCAACGGAATCAATATTAGAAAAATGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTACGCATGATAAATACAAAAAAAGAGAGGATAGTc < 1:204512/141‑1 (MQ=255) aCATTATAGAAAAATATTCAACGGAATCAATATTAGAAAAATGGTTAAATCTTTTCAATAGCTAAATGACAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTACGCATGATAAATCCAAAAAAAGAGAGGATAGTCct > 1:493284/1‑141 (MQ=255) aCATTATAGAAAAATATTCAACGGAATCAATATTAGAAAAATGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTACGCATGATAAATACAAAAAAAGAGAGGactatcct < 1:945284/141‑8 (MQ=255) aCATTATAGAAAAATATTCAACGGAATCAATATTAGAAAAATGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTACGCATGATAAATACAAAAAAAGAGAGGATAGTCct > 2:540528/1‑141 (MQ=255) aCATTATAGAAAAATATTCAACGGAATCAATATTAGAAAAATGGTTAAATCTTTTCAATAGCTAAACGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTAAGCATGATAAATACAAAAAAAGAGAGGATAGTCct > 2:1046319/1‑141 (MQ=255) aTTATAGAAAAATATTCAACGGAATCAATATTAGAAAAATGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTACGCATGATAAATACAAAAAAAGAGAGGATAGTCctct > 1:1560844/1‑141 (MQ=255) aTTAAAGAAAAAGATTCAACGGAATCAATATTAGAAAAATGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTACGCATGATAAATACAAAAAAAGAGAGGATAGTCctct < 2:1086062/141‑1 (MQ=255) ttATAGAAAAATATTCAACGGAATCAATATTAGAAAAATGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTATGTATTCATGAGTACCTAGGATTTTTACGCATGATAAAAACAAAAAAAGAGAGGATAGTCCtctc < 2:1640025/141‑1 (MQ=255) ttATAGAAAAATATTCAACGGAATCAATATTAGAAAAATGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTACGCATGATAAATACAAAAAAAGAGAGGactatcctctc < 1:1140034/141‑11 (MQ=255) aaaaaGAAAAATATTAAACAGAATCAAAATAAGAAAAAAGGTTAAATCATTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTACACAAAAAAAAAAAAAAAAAAGAGAGGATAGTCCtctc < 2:199514/137‑1 (MQ=255) taGAAAAATATTCAACGGAATCAATATTAGAAAAATGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTACGCATGATAAATACAAAAAAAGAGAGGATAGTCCTCTCaaa < 2:873718/141‑1 (MQ=255) taGAAAAATATTCAACGGAATCAATATTAGAAAAATGGTTAAATCTTTTAAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGCTTTTTACGCATGATAAATACAAAAAAAGAGAGGATAGTCCTCTCaaa > 1:795968/1‑141 (MQ=255) taGAAAAAAACATAACGGAATCAATATTAGAAAAATGGGTAAACCATTGCAATAGCTAAAAGAAAAAAACATAGGTATTCATGAATACCTACGATTATTACGCGCGATAAAGACAAAAAAAGATAGGATAGTCCACTCcaa > 2:591839/1‑141 (MQ=255) aaaaaaaaaaaTCAACGAAATCAATATTAAAAAAATGGATAAATATTTACAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTACGCAAAAAAAAAAAAAAAAAAGAGAGGATAGTCCTCTCaaa < 2:986990/138‑1 (MQ=255) aGAAAAATATTCAACGGAATCAATATTAGAAAAATGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTACGCATGATAAATACAAAAAAAGAGAGGATAGTCCTCTCAAAc > 2:1450986/1‑141 (MQ=255) aaaTATTCAACGGAATCAATATTAGAAAAATGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTACGCATGATAAATACAAAAAAAGAGAGGATAGTCCTCTCAAACAATa > 1:533691/1‑141 (MQ=255) atatTCAACGGAATCAATATTAGAAAAATGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTACGCATGATAAATACAAAAAAAGAGAGGATAGTCCTCTCAAACAATAGt < 1:1252739/141‑1 (MQ=255) atTCAACGGAATCAATATTAGAAAAATGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTACGCATGATAAATACAAAAAAAGAGAGGATAGTCCTCTCAAACAATAGTta > 2:317254/1‑141 (MQ=255) atTCAACGGAATCAATATTAGAAAAATGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTACGCATGATAAATACAAAAAAAGAGAGGATAGTCCTCTCAAACAATAGTta > 1:787472/1‑141 (MQ=255) atTCAACGGAATCAATATTAGAAAAATGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTACGCATGATAAATACAAAAAAAGAGAGGATAGTCCTCTCAAACAATAGTta > 2:825550/1‑141 (MQ=255) tCAACGGAATCAATATTAGAAAAATGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTACGCATGATAAATACAAAAAAAGAGAGGATAGTCCTCTCAAACAATAGTtaat < 1:254354/141‑1 (MQ=255) cAACGGAATCAATATTAGAAAAATGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTACGCATGATAAATACAAAAAAAGAGAGGATAGTCCTCTCAAACAATAGTtaata < 1:1225600/141‑1 (MQ=255) aaaCGGAATCAATATTAGAAAAATGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTACGCATAATAAAAAAAAAAAAAGAGAGGATAGTCCTCTCAAACAATAGTtaata < 2:782853/140‑1 (MQ=255) aaCGGAATCAATATTAGAAAAATGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCACGAGTACCTAGGATTTTTACGCATGATAAATACAAAAAAAGAGNGGATAGTCCTCTNAAACAATAGTtaataa < 1:1374555/141‑1 (MQ=255) aCGGAATCAATATTAGAAAAATGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTACGCATGATAAATACAAAAAAAGAGAGGATAGTCCTCTCAAACAATAGTTAATaaa > 2:1017086/1‑141 (MQ=255) aTCAATATTAGAAAAATGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTACGCATGATAAATACAAAAAAAGAGAGGATAGTCCTCTCAAACAATAGTTAATAAAATTGt < 1:165464/141‑1 (MQ=255) aaTATTAGAAAAATGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTAGGCATGATAACTACAAAAAAAGAGAGGAAAGTCCTCTCAAACAATAGTCAATAAAATTGTAGc > 2:1290899/1‑141 (MQ=255) aaTATTAGAAAAATGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTACGCAAAAAAAAAAAAAAAAAAGAGAGGATAGTCCTCTCAAACAATAGTTAATAAAATTGTAGc < 2:974183/141‑1 (MQ=255) atatTAGATAAATGGTTAAATCTTTTCAATAGCTAAATGAAATAATCCTAGGTATTCATGAGTAACTAGGATTTTTACGAAAAAAAAAAAAAAAAAAAGAGAGGATAGTCCTCTCAAACAATAGTTAATAAAATTGTAGcc < 2:1582438/141‑1 (MQ=255) atTAGAAAAATGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTACGCATGATAAATACAGAAAAAGAGAGGATAGTCCTCTCAAACAATAGTTAATAAAATTGTAGCCAt < 1:105747/141‑1 (MQ=255) atTAGAAAAATGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTACGCATGATAAATACAAAAAAAGAGAGGATAGTCCTCTCAAACAATAGTTAATAAAATTGTAGCCAt < 1:1017086/141‑1 (MQ=255) aaaaTGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTACGCATGATAAATACAAAAAAAGAGAGGATAGTCCTCTCAAACAATAGTTAATAAAATTGTAGCCATttcttc > 2:1414765/1‑141 (MQ=255) aTGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTACGCATGATAAATACAAAAAAAGAGAGGATAGTCCTCTCAAACAATAGTTAATAAAATTGTAGCCATTTCTTCCAg > 1:127168/1‑141 (MQ=255) ggTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTACGCATGATAAATACAAAAAAAGAGAGGATAGTCCTCTCAAACAATAGTTAATAAAATTGTAGCCATTTCTTCCAGCt > 1:1625681/1‑141 (MQ=255) ggTTAAATCTTGTATATATCTAAATGAAAAAATCCTAGGTATACATGAATACCTAGGATTTTTACGAATAAAAAAAAAAAAAAAAGAGAGGATAGTCCTCTCAAACAATAGTTAATAAAATTGTAGCCATTTCTTCCAGCt < 2:1556532/141‑1 (MQ=255) ttAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTACGCATGATAAATACAAAAAAAGAGAGGATAGTCCTCTCAAACAATAGTTAATAAAATTGTAGCCATTTCTTCCAGCTGt < 1:381548/141‑1 (MQ=255) ttAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTACGCATGATAAATACAAAAAAAGAGAGGATAGTCCTCTCAAACAATAGTTAATAAAATTGTAGCCATTTCTTCCAGCTGt > 1:677301/1‑141 (MQ=255) tCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTACGCATGATAAATACAAAAAAAGAGAGGATAGTCCTCTCAAACAATAGTTAATAAAATTGTAGCCATTTCTTCCAGCTGTAacta < 1:200884/141‑1 (MQ=255) ttCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTACGCATGATAAATACAAAAAAAGAGAGGATAGTCCTCTCAAACAATAGTTAATAAAATTGTAGCCATTTCTTCCAGCTGTAACTACTaa > 1:1425921/1‑141 (MQ=255) tgaaTAANTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTACGCATGAAAAATAAAAAAAAAGAGAGGATAGTCCTCTCAAACAATAGTTAATAAAATTGTAGCCATTTCTTCCAGCTGTAACTACTAAt < 2:1246278/139‑1 (MQ=255) tCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTACGCATGATAAATAAAAAAAAAGAGAGGATAGTCCTCTCAAACAATAGTTAATAAAATTGTAGCCATTTCTTCCAGCTGTAACTACTAAt < 2:690582/141‑1 (MQ=255) gCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTACGCATGATAAATACAAAAAAAGAGAGGATAGTCCTCTCAAACAATAGTTAATAAAATTGTAGCCATTTCTTCCAGCTGTAACTACTAATACAAGc > 1:1198928/1‑141 (MQ=255) tAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTACGCATGATAAATACAAAAAAAGAGAGGATAGTCCTCTCAAACAATAGTTAATAAAATTGTAGCCATTTCTTCCAGCTGTAACTACTAATACAAGCTa < 1:1371873/141‑1 (MQ=255) aTGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTACGCATGATATATACAAAAAAAGAGAGGATAGTCCTCTCAAACAATAGTTAATAAAATTGTAGCCATTTCTTCCAGCTGTAACTACTAATCCAAGCTAAGt > 1:1250844/1‑141 (MQ=255) aTGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTACGCATGATAAATACAAAAAAAGAGAGGATAGTCCTCTCAAACAATAGTTAATAAAATTGTAGCCATTTCTTCCAGCTGTAACTACTAATACAAGCTAAGt < 1:706635/141‑1 (MQ=255) aTGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTACGCATGATAAATACAAAAAAAGAGAGGATAGTCCTCTCAAACAATAGTTAATAAAATTGTAGCCATTTCTTCCAGCTGTAACTACTAATACAAGCTAAGt > 1:1250858/1‑141 (MQ=255) aaaaaTCCTAGGTATTCATGAGTACCTAGGATTTTTACGCATGATAAATACAAAAAAAGAGAGGATAGTCCTCTCAAACAATAGTTAATAAAATTGTAGCCATTTCTTCCAGCTGTAACTACTAATACAAGCTAAGTTCAt < 2:1231814/141‑1 (MQ=255) aaaaTCCTAGGTATTCATGAGTACCTAGGATTTTTACGCATGATAAATACAAAAAAAGAGAGGATAGTCCTCTCAAACAATAGTTAATAAAATTGTAGCCATTTCTTCCAGCTGTAACTACTAATACAAGCTAAGTTCAtt > 1:1096924/1‑141 (MQ=255) aaaaTCCTAGGTATTCATGAGTACCTAGGATTTTTACGCATGATAAATACAAAAAAAGAGAGGATAGTCCTCTCAAACAATAGTTAATAAAATTGTAGCCATTTCTTCCAGCTGTAACTACTAATACAAGCTAAGTTCAtt > 2:1495582/1‑141 (MQ=255) aaaaTCCTAGGTATTCATGAGTACCTAGGATTTTTACGCATGATAAATACAAAAAAAGAGAGGATAGTCCTCTCAAACAATAGTTAATAAAATTGTAGCCATTTCTTCCAGCTGTAACTACTAATACAAGCTAAGTTCAtt > 2:1014152/1‑141 (MQ=255) aaaaTCCTAGGTATTCATGAGGACCTAGGATTTTTACGCATGATAAATACAAAAAAAGAAAGGATAGTCCTCTCAAACAATAGTTAATAAAATAGTAGCCATTTCTTCCAGCTGTAACTACTAATACAAGCTAAGTTCAtt > 2:1418962/1‑141 (MQ=255) aaTCCTAGGTATTCATGAGTACCTAGGATTTTTACGCACGATAAATACAAAAAAAGAGAGGATAGTCCTCTCAAACAATAGTTAATAAAATTGTAGCCATTTCTTCCAGCTGTAACTACTAATACAAGCTAAGTTCATTAc > 2:291994/1‑141 (MQ=255) aTCCTAGGTATTCACGAGTACGTAGGAATTTTACGCATGATAAATACAAAAAAAGAGAGGATAGTCCCCTCAAACAATAGTTAATAAAATTGTAGCCATTTCTTCAAGCTGTAACTACTAATACAAGCTACGTTCATTACg > 2:1366227/1‑141 (MQ=255) tCCTAGGTATTTATTAGTACCTAGGATTTTTACGCATGATAAATACAAAAAAAGAGAGGATAGTCCTGTCAAACAATAGTTAATAAAATTGTAGCCATTTCTTCCAGCTGTAACTACTAATACAAGCTAAGTTCATTACGa < 1:945831/141‑1 (MQ=255) cTAGGTACTCATGAATACCTAGGATTTTTACGCATGATAAATACAAAAAAAGAGAGGATAGTCCTCTCAAACAATAGTTAATAAAATTGTAGCCATTTCTTCCAGCTGTAACTACTAATACAAGCTAAGTTCATTACGata > 1:1131309/1‑141 (MQ=255) tAGGTACTCATGAATACCTAGGATTTTTACGCATGATAAATACAAAAAAAGAGAGGATAGTCCTCTCAAACAATAGTTAATAAAATTGTAGCCATTTCTTCCAGCTGTAACTACTAATACAAGCTAAGTTCATTACGatat > 1:802689/1‑141 (MQ=255) aGGTATTCATGAGTACCTAGGATTTTTACGCATGATAAATACAAAAAAAGAGAGGATAGTCCTCTCAAACAATAGTTAATAAAATTGTAGCCATTTCTTCCAGCTGTAACTACTAATACAAGCTAAGTTCATTACGAtatg > 2:245977/1‑141 (MQ=255) tATTCATGAGTACCTAGGATTTTTACTCATGATAAATACAAAAAAAGAGAGGATAGTCCTCTCAAACAATAGTTAATAAAATTGTAGCCATTTCTTCCAGCTGTAACTACTAATACAAGCTAAGTTCATTACGAtatgtat < 2:1303054/141‑1 (MQ=255) | TCAGCTTGTTAATAATGATGTATTAGCAGCGGAGTTTGGTTCGAAAGCGAGAGAAAACATTATAGAAAAATATTCAACGGAATCAATATTAGAAAAATGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTACGCATGATAAATACAAAAAAAGAGAGGATAGTCCTCTCAAACAATAGTTAATAAAATTGTAGCCATTTCTTCCAGCTGTAACTACTAATACAAGCTAAGTTCATTACGATATGTAT > CP000730/1042650‑1042927 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |