| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP000730 | 2850817 = | 70 (1.270) | 4 (0.080) | 4/226 | NT | 6.3% | intergenic (+16/+103) | pcp/USA300HOU_2693 | C15 family pyroglutamyl‑peptidase I/hypothetical protein |
| ? | CP000730 | 2850866 = | 57 (1.160) | intergenic (+65/+54) | pcp/USA300HOU_2693 | C15 family pyroglutamyl‑peptidase I/hypothetical protein | |||||
ATTATTTATACATTTGTAAATTTTAGGAAGTTAAAAAAAGAAGACTAAACAATGTCGTTTAGCTAAAATACATCATTATAGTAAAACTGTATACCAATCATCCAAAAGCACCCTAAA‑‑GTTAGACTTAAACTAACAAATTAGGGTGCTTTTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP000730/2850967‑2850817‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttagggtgcttttgGATGATTGGTATACAGTTTTACTATAATGATGTATTTTAGCTAAACGACATTGTTTAGTCTTCTTTTTTTAACTTCCTAAAATTTACAAATGTATAAATAATAAATGCTATATTTAGAATGATGAGTATACTTACTGAAA > CP000730/2850866‑2851005 ATTATTTATACATTTGTAAATTTTAGGAAGTTAAAAAAAGAAGACTAAACAATGTCGTTTAGCTAAAATACATCATTATAGTAAAACTGTATACCAAGCATCCAAAAGCACCCTAAA‑‑GTTAGACTTAAACTAACAAATTAG > 2:660998/1‑141 ATTTATACATTTGTAAATTTTAGGAAGTTAAAAAAAGAAGACTAAACAATGTCGTTTAGCTAAAATACATCATTATAGTAAAACTGTATACCAATCATCCAAAAGCACCCTAAA‑‑GTTAGACTTAAACTAACAAATTAGGGT > 2:442557/1‑141 TTTATACATTTGTAAATTTTAGGAAGTTAAAAAAAGAAGACTAAACAATGTCGTTTAGCTAAAATACATCATTATAGTAAAACTGTATACCAATCATCCAAAAGCACCCTAAA‑‑GTTAGACTTAAACTAACAAATTAGGGTG < 2:407797/141‑1 TTATACATTTGTAAATTTTAGGAAGTTAAAAAAAGAAGACTAAACAATGTCGTTTAGCTAAAATACATCATTATAGTAAAACTGTATACCAATCATCCAAAAGCACCCTAAA‑‑GTTAGACTTAAACTAACAAATTAGGGTGC > 2:67011/1‑141 TTATACATTTGTAAATTTTAGGAAGTTAAAAAAAGAAGACTAAACAATGTCGTTTAGCTAAAATACATCATTATAGTAAAACTGTATACCAATCATCCAAAAGCACCCTAAA‑‑GTTAGACTTAAACTAACAAATTAGGGTGC > 1:362303/1‑141 TATACATTTGTAAATTTTAGGAAGTTAAAAAAAGAAGACTAAACAATGTCGTTTAGCTAAAATACATCATTATAGTAAAACTGTATACCAATCATCCAAAAGCACCCTAAA‑‑GTTAGACTTAAACTAACAAATTAGGGTGCT < 1:310250/141‑1 TATACATTTGTAAATTTTAGGAAGTTAAAAAAAGAAGACTAAACAATGTCGTTTAGCTAAAATACATCATTATAGTAAAACTGTATACCAATCATCCAAAAGCACCCTAAA‑‑GTTAGACTTAAACTAACAAATTAGGGTGCT > 1:360060/1‑141 ATACATTTGTAAATTTTAGGAAGTTAAAAAAAGAAGACTAAACAATGTCGTTTAGCTAAAATACATCATTATAGTAAAACTGTATACCAATCATCCAAAAGCACCCTAAA‑‑GTTAGACTTAAACTAACAAATTAGGGTGCTT < 2:199240/141‑1 ATACATTTGTAAATTTTAGGAAGTTAAAAAAAGAAGACTAAACAATGTCGTTTAGCTAAAATACATCATTATAGTAAAACTGTATACCAATCATCCAAAAGCACCCTAAA‑‑GTTAGACTTAAACTAACAAATTAGGGTGCTT < 1:558033/141‑1 ATACATTTGTAAATTTTAGGAAGTTAAAAAAAGAAGACTAAACAATGTCGTTTAGCTAAAATACATCATTATAGTAAAACTGTATACCAATCATCCAAAAGCACCCTAAA‑‑GTTAGACTTAAACTAACAAATTAGGGTGCTT < 1:60163/141‑1 TACATTTGTAAATTTTAGGAAGTTAAAAAAAGAAGACTAAACAATGTCGTTTAGCTAAAATACATCATTATAGTAAAACTGTATACCAATCATCCAAAAGCACCCTAAA‑‑GTTAGACTTAAACTAACAAATTAGGGTGCTTT < 2:543497/141‑1 TACATTTGTAAATTTTAGGAAGTTAAAAAAAGAAGACTAAACAATGTCGTTTAGCTAAAATACATCATTATAGTAAAACTGTATACCAATCATCCAAAAGCACCCTAAA‑‑GTTAGACTTAAACTAACAAATTAGGGTGCTTT > 2:248176/1‑141 ACATTTGTAAATTTTAGGAAGTTAAAAAAAGAAGACTAAACAATGTCGTTTAGCTAAAATACATCATTATAGTAAAACTGTATACCAATCATCCAAAAGCACCCTAAA‑‑GTTAGACTTAAACTAACAAATTAGGGTGCTTTT < 1:190559/141‑1 AAGACTAAACAATGTCGTTTAGCTAAAATACATCATTATAGTAAAACTGTATACCAATCATCCAAAAGCACCCTAAGTTGTTAGTTTAAGTCTAAC‑‑TTTAGGGTGCTTTTGGATGATTGGTATACAGTTTTACTATAATGA < 2:411023/141‑1 ATACCAATCATCCAAAAGCACCCTAAA‑‑GTTAGACTTAAACTAACAAATTAGGGTGCTTTTGGATGATTGGTATACAGTTTTACTATAATGATGTATTTTAGCTAAACGACATTGTTTAGTCTTCTTTTTTTAACTTCCTAA > 1:401646/1‑141 CACCCTAAA‑‑GTTAGACTTAAACTAACAAATTAGGGTGCTTTTGGATGATTGGTATACAGTTTTACTATAATGATGTATTTTAGCTAAACGACATTGTTTAGTCTTCTTTTTTTAACTTCCTAAAATTTACAAATGTATAAA > 2:333909/1‑141 TAAA‑‑GTTAGACTTAAACTAACAAATTAGGGTGCTTTTGGATGATTGGTATACAGTTTTACTATAATGATGTATTTTAGCTAAACGACATTGTTTAGTCTTCTTTTTTTAACTTCCTAAAATTTACAAATGTATAAATAATA > 2:461956/1‑141 GGGTGCTTTTGGATGATTGGTATACAGTTTTACTATAATGATGTATTTTAGCTAAACGACATTGTTTAGTCTTCTTTTTTTAACTTCCTAAAATTTACAAATGTATAAATAATAAATGCTATATTTAGAATGATGAGTATA > 1:150139/1‑141 GTGCTTTTGGATGATTGGTATACAGTTTTACTATAATGATGTATTTTAGCTAAACGACATTGTTTAGTCTTCTTTTTTTAACTTCCTAAAATTTACAAATGTATAAATAATAAATGCTATATTTAGAATGATGAGTATACT > 2:326611/1‑141 CTTTTGGATGATTGGTATACAGTTTTACTATAATGATGTATTTTAGCTAAACGACATTGTTTAGTCTTCTTTTTTTAACTTCCTAAAATTTACAAATGTATAAATAATAAATGCTATATTTAGAATGATGAGTATACTTAC > 2:334779/1‑141 CTTTTGGATGATTGGTATACAGTTTTACTATAATGATGTATTTTAGCTAAACGACATTGTTTAGTCTTCTTTTTTTAACTTCCTAAAATTTACAAATGTATAAATAATAAATGCTATATTTAGAATGATGAGTATACTTAC > 1:320336/1‑141 CTTTTGGATGATTGGTATACAGTTTTACTATAATGATGTATTTTAGCTAAACGACATTGTTTAGTCTTCTTTTTTTAACTTCCTAAAATTTACAAATGTATAAATAATAAATGCTATATTTAGAATGATGAGTATACTTAC > 2:670785/1‑141 TTTGGATGATTGGTATACAGTTTTACTATAATGATGTATTTTAGCTAAACGACATTGTTTAGTCTTCTTTTTTTAACTTCCTAAAATTTACAAATGTATAAATAATAAATGCTATATTTAGAATGATGAGTATACTTACTG < 1:2837/141‑1 TTTGGATGATTGGTATACAGTTTTACTATAATGATGTATTTTAGCTAAACGACATTGTTTAGTCTTCTTTTTTTAACTTCCTAAAATTTACAAATGTATAAATAATAAATGCTATATTTAGAATGATGAGTATACTTACTG < 1:256652/141‑1 GGATGATTGGTATACAGTTTTACTATAATGATGTATTTTAGCTAAACGACATTGTTTAGTCTTCTTTTTTTAACTTCCTAAAATTTACAAATGTATAAATAATAAATGCTATATTTAGAATGATGAGTATACTTACTGAAA < 2:124645/141‑1 ATTATTTATACATTTGTAAATTTTAGGAAGTTAAAAAAAGAAGACTAAACAATGTCGTTTAGCTAAAATACATCATTATAGTAAAACTGTATACCAATCATCCAAAAGCACCCTAAA‑‑GTTAGACTTAAACTAACAAATTAGGGTGCTTTTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP000730/2850967‑2850817‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttagggtgcttttgGATGATTGGTATACAGTTTTACTATAATGATGTATTTTAGCTAAACGACATTGTTTAGTCTTCTTTTTTTAACTTCCTAAAATTTACAAATGTATAAATAATAAATGCTATATTTAGAATGATGAGTATACTTACTGAAA > CP000730/2850866‑2851005 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |