New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	531230 =	49 (0.890)	4 (0.080)	4/242	NT	8.5%	intergenic (+801/‑4924)	veg/rplY	hypothetical protein/ribosomal protein L25
	?	CP000730	531269 =	39 (0.740)					intergenic (+840/‑4885)	veg/rplY	hypothetical protein/ribosomal protein L25

ATAGGGGCGAGTTTGGAAGAATTGGCTCTACTAGGCAGTAAAATCGGGACAGATATTCCGTTTTGTATTTATAATAAAACTGCACTATGTACTGGAAGAGGAGAGAAAATCGAGTTTTTAAATAAACCACCTTCAGCTTGGGTGATTCTTGCTAAACCAAACTTAGGCATATCATCACCAGATATATTTAAGTTGATTAATTTAGATAAGCGTTACGACGTACATACGAAAATGTGTTATGAGGCCTTAGAAAATCGAGATTATCAACAATTATGT  >  CP000730/531090‑531365                                                                                                                                             |                                                                                                                                        ataGGGGCGAGTTTGGAAGAATTGGCTCTACTAGGCAGTAAAATCGGGACAGATATTCCGTTTTGTATTTATAATAAAACTGCACTATGTACTGGAAGAGGAGAGAAAATCGAGTTTTTAAATAAACCACCTTCAGCTTgg                                                                                                                                         <  1:499873/141‑1 (MQ=255)  ttttgaaacagaaattggctctaatcgattagacaaactttgacataattgttgataatctcgattttctaaggcctcataacacattttcgtatgtacgtcgtaacgcttatctaaattaatcaacttaaatatatctgg                                                                                                                                        >  2:402609‑M1/140‑141 (MQ=255)   aGGGGCGAGTTTGGAAGAATTGGCTCTACTAGGCAGTAAAATTGGGACAGATATTCCGTTTTGTATTTATAATAAAACTGCACTATGTACTGGAAGAGGAGAGAAAATCGAGTTTTTAAATAAACCACCTTCAGCTTGGGt                                                                                                                                       <  1:112906/141‑1 (MQ=255)   aGGGGCGAGTTTGGAAGAATTGGCTCTACTAGGCAGTAAAATCGGGACAGATATTCCGTTTTGTATTTATAATAAAACTGCACTATGTACTGGAAGAGGAGAGAAAATCGAGTTTTTAAATAAACCACCTTCAGCTTGGGt                                                                                                                                       <  2:469208/141‑1 (MQ=255)     tgaaacagaaattggctctaatcgattagacaaactttgacataattgttgataatctcgattttctaaggcctcataacacattttcgtatgtacgtcgtaacgcttatctaaattaatcaacttaaatatatctGGTGa                                                                                                                                     <  2:460452‑M1/5‑1 (MQ=255)            tttGGAAGAATTGGCTCTACTAGGCAGTAAAATCGGGACAGATATTCCGTTTTGTATTTATAATAAAACTGCACTATGTACTGGAAGAGGAGAGAAAATCGAGTTTTTAAATAAACCACCTTCAGCTTGGGTGATTCTTGc                                                                                                                              <  2:529204/141‑1 (MQ=255)            tttGGAAGAATTGGCTCTACTAGGCAGTAAAATCGGGACAGATATTCCGTTTTGTATTTATAATAAAACTGCACTATGTACTGGAAGAGGAGAGAAAATCGAGTTTTTAAATAAACCACCTTCAGCTTGGGTGATTCTTGc                                                                                                                              <  2:308025/141‑1 (MQ=255)               ggAAGAATTGGCTCTACTAGGCAGTAAAATCGGGACAGATATTCCGTTTTGTATTTATAATAAAACTGCACTATGTACTGGAAGAGGAGAGAAAATCGAGTTTTTAAATAAACCACCTTCAGCTTGGGTGATTCTTGCTaa                                                                                                                           >  2:674387/1‑141 (MQ=255)                 aagaaTTGGCTCTACTAGGCAGTAAAATCGGGACAGATATTCCGTTTTGTATTTATAATAAAACTGCACTATGTACTGGAAGAGGAGAGAAAATCGAGTTTTTAAATAAACCACCTTCAGCTTGGGTGATTCTTGCTAAAc                                                                                                                         <  1:619225/141‑1 (MQ=255)                         gCTCTACTAGGCAGTAAAATCGGGACAGATATTCCGTTTTGTATTTATAATAAAACTGCACTATGTACTGGAAGAGGAGAGAAAATCGAGTTTTTAAATAAACCACCTTCAGCTTGGGTGATTCTTGCTAAACCAAACTTa                                                                                                                 >  1:197664/1‑141 (MQ=255)                          ctctACTAGGCAGTAAAATCGGGACAGATATTCCGTTTTGTATTTATAATAAAACTGCACTATGTACTGGAAGAGGAGAGAAAATCGAGTTTTTAAATAAACCACCTTCAGCTTGGGTGATTCTTGCTAAACCaa                                                                                                                      <  2:74455/135‑1 (MQ=255)                          ctctACTAGGCAGTAAAATCGGGACAGATATTCCGTTTTGTATTTATAATAAAACTGCACTATGTACTGGAAGAGGAGAGAAAATCGAGTTTTTAAATAAACCACCTTCAGCTTGGGTGATTCTTGCTAAACCaa                                                                                                                      >  1:74455/1‑135 (MQ=255)                          ctctACTAGGCAGTAAAATCGGGACAGATATTCCGTTTTGTATTTATAATAAAACTGCACTATGTACTGGAAGAGGAGAGAAAATCGAGTTTTTAAATAAACCACCTTCAGCTTGGGTGATTCTTGCTAAACCAAACTTAg                                                                                                                >  2:438542/1‑141 (MQ=255)                          ctctACTAGGCAGTAAAATCGGGACAGATATTCCGTTTTGTATTTATAATAAAACTGCACGATGTACTGGAAGAGGAGAGAAAATCGAGTTTTTAAATAAACCACCTTCAGCTTGGGAGATTCGTGCTCAACCAAACTTAg                                                                                                                >  1:212976/1‑141 (MQ=255)                            ctactaGGCAGTAAAATCGGGACAGATATTCCGTTTTGTATTTATAATAAAACTGCACTATGTACTGGAAGAGGAGAGAAAATCGAGTTTTTAAATAAACCACCTTCAGCTTGGGTGATTCTTGCTAAACCAAACTTAGGc                                                                                                              >  1:295264/1‑141 (MQ=255)                                   caaactttgacataattgttgataatctcgattttctaaggcctcataacacattttcgtatgtacgtcgtaacgcttatctaaattaatcaacttaaatatatctGGTGATTCTTGCTAAACCAAACTTAGGCATatcat                                                                                                       >  1:28811‑M1/107‑141 (MQ=255)                                    cAGTAAAATCGGGACAGATATTCCGTTTTGTATTTATAATAAAACTGCACTATGTACTGGAAGAGGAGAGAAAATCGAGTTTTTAAATAAACCACCTTCAGCTTGGGTGATTCTTGCTAAACCAAACTTAGGCATatcatc                                                                                                      <  1:579052/141‑1 (MQ=255)                                      gTAAAATCGGGACAGATATTCCGTTTTGTATTTATAATAAAACTGCACTATGTACTGGAAGAGGAGAGAAAATCGAGTTTTTAAATAAACCACCTTCAGCTTGGGTGATTCTTGCTAAACCAAACTTAGGCATATCATCAc                                                                                                    <  2:322046/141‑1 (MQ=255)                                       tAAAATCGGGACAGATATTCCGTTTTGTATTTATAATAAAACTGCACTATGTACTGGAAGAGGAGAGAAAATCGAGTTTTTAAATAAACCACCTTCAGCTTGGGTGATTCTTGCTAAACCAAACTTAGGCATATCATCAcc                                                                                                   >  1:486855/1‑141 (MQ=255)                                            acataattgttgataatctcgattttctaaggcctcataacacattttcgtatgtacgtcgtaacgcttatctaaattaatcaacttaaatatatctGGTGATTCTTGCTAAACCAAACTTAGGCATATCATCACCAGata                                                                                              >  2:7049‑M1/98‑141 (MQ=255)                                              gggACAGATATTCCGTTTTGTATTTATAATAAAACTGCACTATGTACTAGAAGAGGAGAGAAAATCGAGTTTTTAAATAAACCACCTTCAGCTTGGGTGATTCTTGCTAAACCAAACTTAGGCATATCATCACCAGatata                                                                                            >  1:618192/1‑141 (MQ=255)                                               ggACAGATATTCCGTTTTGTATTTATAATAAAACTGCACTATGTACTGGAAGAGGAGAGAAAATCGAGTTTTTAAATAAACCACCTTCAGCTTGGGTGATTCTTGCTAAACCAAACTTAGGCATATCATCACCAGatatat                                                                                           >  2:375246/1‑141 (MQ=255)                                                gACAGATATTCCGTTTTGTATCTATAATAAAACTGCACTATGTACTGGAAGAGGAGAGAAAATCGAGTGTTTAAACAAACCACCTTCAGCGTGGGTGAGTCTTGCTAAACCAAACTTAGGCATATCAATACCAGATATAtt                                                                                          >  2:343769/1‑141 (MQ=255)                                                         tCCGTTTTGTATTTATAATAAAACTGCACTATGTACTGGAAGAGGAGAGAAAATCGAGTTTTTAAATAAACCACCTTCAGCTTGGGTGATTCTTGCTAAACCAAACTTAGGCATATCATCACCAGATATATTTAAGTTGAt                                                                                 <  1:375246/141‑1 (MQ=255)                                                            gTTTTGTATTTATAATAAAACTGCACTATGTACTGGAAGAGGAGAGAAAATCGAGCCAGTAAATAAACCACCTTCAGCTTGGGTGATTCTTGCTAAACCAAACTTAGGCATATCATCACCAGATATATTTAAGTTGATTaa                                                                              >  1:187469/1‑141 (MQ=255)                                                              tttGTATTTATAATAAAACTGCACTATGTACTGGAAGAGGAGAGAAAATCGAGTTTTTAAATAAACCACCTTCAGCTTGGGTGATTCTTGCTAAACCAAAGTTAGGCATATCATCACCAGATATATTTAAGTTGATTAAtt                                                                            >  2:626098/1‑141 (MQ=255)                                                              tttGTATTTATAATAAAACTGCACTATGTACTGGAAGAGGAGAGAAAATCGAGTTTTTAAATAAACCACCTTCAGCTTGGGTGATTCTTGCTAAACCAAACTTAGGCATATCATCACCAGATATATTTAAGTTGATTAAtt                                                                            >  2:510909/1‑141 (MQ=255)                                                              tttGTAGTTATAATAAAGGTGCACTATGTACTGGAGGAGGAGAGAAAATCGGGTTTTTAAATAAGCCACCTTCAGCTTGGGTGATTCTTGCTAAACCAAACTTAGGCATATCATCACCAGATATATTTAAGTTGATTAAtt                                                                            <  2:212748/141‑1 (MQ=255)                                                                 gTATTTATAATAAAACTGCACTATGTACTGGAAGAGGAGAGAAAATCGAGTTTTTAAATAAACCACCTTCAGCTTGGGTGATTCTTGCTaaa                                                                                                                          <  2:626315/92‑1 (MQ=255)                                                                 gTATTTATAATAAAACTGCACTATGTACTGGAAGAGGAGAGAAAATCGAGTTTTTAAATAAACCACCTTCAGCTTGGGTGATTCTTGCTAAACCAAACTTAGGCATATCATCACCAGATATATTTAAGTTGATTAATTTAg                                                                         <  2:416005/141‑1 (MQ=255)                                                                 gTATTTAGAATAAAACTGCACTATGTACTGGAAGAGGAGAGAAAATCGAGTTTTTAAATAAACCACCTTCAGCTTGGGTGATTCTTGCTaaa                                                                                                                          >  1:626315/1‑92 (MQ=255)                                                                      tataATAAAACTGCACTATGTACTGGAAGAGGAGAGAAAATCGAGTTTTTAAATAAACCACCTTCAGCTTGGGTGATTCTTGCTAAACCAAACTTAGGCATATCATCACCAGATATATTTAAGTTGATTAATTTAGATAAg                                                                    <  1:473509/141‑1 (MQ=255)                                                                             aaaCTGCACTATGTACTGGAAGAGGAGAGAAAATCGAGTTTTTAAATAAACCACCTTCAGCTTGGGTGATTCTTGCTAAACCAAACTTAGGCATATCATCACCAGATATATTTAAGTTGATTAATTTAGATAAGCGTTacg                                                             >  1:270653/1‑141 (MQ=255)                                                                               aCTGCACTATGTACTGGAAGAGGAGAGAAAATCGAGTTTTTAAATAAACCACCTTCAGCTTGGGTGATTCTTGCTAAACCAAACTTAGGCATATCATCACCAGATATATTTAAGTTGATTAATTTAGATAAGCGTTacgac                                                           >  2:435698/1‑141 (MQ=255)                                                                                cTGCACTATGTACTGGAAGAGGAGAGAAAATCGAGTTTTTAAATAAACCACCTTCAGCTTGGGTGATTCTTGCTAAACCAAACTTAGGCATATCATCACCAGATATATTTAAGTTGATTAATTTAGATAAGCGTTacgacg                                                          >  1:490364/1‑141 (MQ=255)                                                                                  gCACTATGTACTGGAAGAGGAGAGAAAATCGAGTTTTTAAATAAACCACCTTCAGCTTGGGTGATTCTTGCTAAACCAAACTTAGGCATATCATCACCAGATATATTTAAGTTGATTAATTTAGATAAGCGTTACGACGTa                                                        >  2:612995/1‑141 (MQ=255)                                                                                    aCTATGTACTGGAAGAGGAGAGAAAATCGAGTTTTTAAATAAACCACCTTCAGCTTGGGTGATTCTTGCTAAACCAAACTTAGGCATATCATCACCAGATATATTTAAGTTGATTAATTTAGATAAGCGTTACGACGTACa                                                      >  1:238730/1‑141 (MQ=255)                                                                                    aCTATGTACTGGAAGAGGAGAGAAAATCGAGTTTTTAAATAAACCACCTTCAGCTTGGGTGATTCTTGCTAAACCAAACTTAGGCATATCATCACCAGATATATTTAAGTTGATTAATTTAGATAAGCGTTACGACGTACa                                                      >  2:378594/1‑141 (MQ=255)                                                                                          tACTGGAAGAGGAGAGAAAATCGAGTTTTTAAATAAACCACCTTCAGCTTGGGTGATTCTTGCTAAACCAAACTTAGGCATATCATCACCAGATATATTTAAGTTGATTAATTTAGATAAGCGTTACGACGTACATACGaa                                                >  1:487488/1‑141 (MQ=255)                                                                                                   aggagAGAAAATCGAGTTTTTAAATAAACCACCTTCAGCTTGGGTGATTCTTGCTAAACCAAACTTAGGCATATCATCAcc                                                                                                   >  1:133767/1‑81 (MQ=255)                                                                                                   aggagAGAAAATCGAGTTTTTAAATAAACCACCTTCAGCTTGGGTGATTCTTGCTAAACCAAACTTAGGCATATCATCAcc                                                                                                   <  2:133767/81‑1 (MQ=255)                                                                                                     gagagaAAATCGAGTTTTTAAATAAACCACCTTCAGCTTGGGTGATTCTTGCTAAACCAAACTTAGGCATATCATCACCAGATATATTTAAGTTGATTAATTTAGATAAGCGTTACAACGTACATACGAAAATGTGTTATg                                     <  2:618192/141‑1 (MQ=255)                                                                                                             aTCGAGTTTTTAAATAAACCACCTTCAGCTTGGGTGATTCTTGCTAAACCAAACTTAGGCATATCATCACCAGATATATTTAAGTTGATTAATTTAGATAAGCGTTACGACGTACATACGAAAATGTGTTATGAGGCCTTa                             <  2:462912/141‑1 (MQ=255)                                                                                                             aTCGAGTTTTTAAATAAACCACCTTCAGCTTGGGTGATTCTTGCTAAACCAAACTTAGGCATATCATCACCAGATATATTTAAGTTGATTAATTTAGATAAGCGTTACGACGTACATACGAAAATGTGTTATGAGGCCTTa                             <  1:594479/141‑1 (MQ=255)                                                                                                              tCGAGTTTTTAAATAAACCACCTTCAGCTTGGGTGATTCTTGCTAAACCAAACTTAGGCATATCATCACCAGATATATTTAAGTTGATTAATTTAGATAAGCGTTACGACGTACATACGAAAATGTGTTATGAGGCCTTAg                            <  1:85149/141‑1 (MQ=255)                                                                                                              tCGAGTTTTTAAATAAACCACCTTCAGCTTGGGTGATTCTTGCTAAACCAAACTTAGGCATATCATCACCAGATATATTTAAGTTGATTAATTTAGATAAGCGTTACGACGTACATACGAAAATGTGTTATGAGGCCTTAg                            >  1:349627/1‑141 (MQ=255)                                                                                                                  gTTTTTAAATAAACCACCTTCAGCTTGGGTGATTCTTGCTAAACCAAACTTAGGCATATCATCACCAGATATATTTAAGTTGATTAATTTAGATAAGCGTTATGACGTACATACGAAAATGTGTTATGAGGCCTTAGaaaa                        >  1:709047/1‑141 (MQ=255)                                                                                                                  gTTTTTAAATAAACCACCTTCAGCTTGGGTGATTCTTGCTAAACCAAACTTAGGCATATCATCACCAGATATATTTAAGTTGATTAATTTAGATAAGCGTTACGACGTACATACGAAAATGTGTTATGAGGCCTTAGaaaa                        >  1:79568/1‑141 (MQ=255)                                                                                                                    ttttAAATAAACCACCTTCAGCTTGGGTGATTCTTGCTAAACCAAACTTAGGCATATCATCACCAGATATATTTAAGTTGATTAATTTAGATAAGCATTACGACGTACATACGAAAATGTGTTATGAGGCCTTAGAAAATc                      <  2:397819/141‑1 (MQ=255)                                                                                                                     tttAAATAAACCACCTTCAGCTTGGGTGATTCTTGCTAAACCAAACTTAGGCATATCATCACCAGATATATTTAAGTTGATTAATTTAGATAAGCGTTACGACGTACATACGAAAATGTGTTATGAGGCCTTGGAAAATCg                     >  2:201335/1‑141 (MQ=255)                                                                                                                       taaataaaCCACCTTCAGCTTGGGTGATTCTTGCTAAACCAAACTTAGGCATATCATCACCAGATATATTTAAGTTGATTAATTTAGATAAGCGTTACGACGTACATACGAAAATGTGTTATGAGGCCTTAGAAAATCgag                   >  1:578952/1‑141 (MQ=255)                                                                                                                             aaCCACCTTCAGCTTGGGTGATTCTTGCTAAACCAAACTTAGGCATATCATCACCAGATATATTTAAGTTGATTAATTTAGATAAGCGTTACGACGTACATACGAAAATGTGTTATGAGGCCTTAGAAAATCGAGATTATc             <  2:486855/141‑1 (MQ=255)                                                                                                                              aacttaaatatatctGGTGATTCTTGCTAAACCAAACTTAGGCATATCATCACCAGATATATTTAAGtt                                                                                    <  2:537011‑M1/54‑1 (MQ=255)                                                                                                                              aacttaaatatatctGGTGATTCTTGCTAAACCAAACTTAGGCATATCATCACCAGATATATTTAAGtt                                                                                    >  1:537011‑M1/16‑69 (MQ=255)                                                                                                                               ccaccTTCAGCTTGGGTGATTCTTGCTAAACCAAACTTAGGCATATCATCACCAGATATATTTAAGTTGATTAATTTAGATAAGCGTTACGACGTACATACGAAAATGTGTTATGAGGCCTTAGAAAATCGAGATTATcaa           >  1:399254/1‑141 (MQ=255)                                                                                                                                 accTTCAGCTTGGGTGATTCTTGCTAAAAAAAACTTAGGCATATCATCACCAGATATATTTAAGTTGATTAATTTTGATAAGCGATACGACGTACATACAAAAATGTATTATGAAAAACCAAAAAATCGAGATTATcaaca         >  2:462651/1‑141 (MQ=255)                                                                                                                                       aGCTTGGGTGATTCTTGCTAAACCAAACTTAGGCATATCATCACCAGATATATTTAAGTTGATTAATTTAGATAAGCGTTACGACGTACATACGAAAATGTGTTATGAGGCCTTAGAAAATCGAGATTATCAACAATTATg   <  2:564941/141‑1 (MQ=255)                                                                                                                                       aGCTTGGGTGATTCTTGCTAAACCAAACTTAGGCATATCATCACCAGATATATTTAAGTTGATTAATTTAGATAAGCGTTACGACGTACATACGAAAATGTGTTATGAGGCCTTAGAAAATCGAGATTATCAACAATTATg   <  1:435698/141‑1 (MQ=255)                                                                                                                                        gCTTGGGTGATTCTTGCTAAACCAAACTTAGGCATATCATCACCAGATATATTTAAGTTGATTAATTTAGATAAGCGTTACGACGTACATACGAAAATGTGTTATGAGGCCTTAGAAAATCGAGATTATCAACAATTATGt  <  1:615434/141‑1 (MQ=255)                                                                                                                                             |                                                                                                                                        ATAGGGGCGAGTTTGGAAGAATTGGCTCTACTAGGCAGTAAAATCGGGACAGATATTCCGTTTTGTATTTATAATAAAACTGCACTATGTACTGGAAGAGGAGAGAAAATCGAGTTTTTAAATAAACCACCTTCAGCTTGGGTGATTCTTGCTAAACCAAACTTAGGCATATCATCACCAGATATATTTAAGTTGATTAATTTAGATAAGCGTTACGACGTACATACGAAAATGTGTTATGAGGCCTTAGAAAATCGAGATTATCAACAATTATGT  >  CP000730/531090‑531365

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.