New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	1805304 =	43 (0.780)	4 (0.080)	4/238	NT	9.2%	intergenic (+2276/+49)	cycA/pykA	APC family amino acid‑polyamine‑organocation transporter/pyruvate kinase
	?	CP000730	1805347 =	39 (0.760)					intergenic (+2319/+6)	cycA/pykA	APC family amino acid‑polyamine‑organocation transporter/pyruvate kinase

TCCAAAGTAATATGAGTGAAAGTTTGAAGGTGATAATGTACATGTATAAAAGATATAAACATTTATATAGATTGCCATTCATACACTATCATTATCAAATAACCTATTAATTACGTCATAAAATACCAGATGAACCAAAAAACGCCTTTCCATTGTTGATAAATGGAAAGACGTTTTTTTATAAATTATAGTACGTTTGCATATCCTTCAAAGATTTTACCTTGAGCAGCATCAATCGTAACTAACATGTTATTGCTTATGTTTTTAACAGCTTTT  >  CP000730/1805168‑1805443                                                                                                                                         |                                                                                                                                            tggtttagaaaaaggtattccaacagttgtaggtgtagaaaaagctgttaaaaacataagcaataacatgttagttacgattgatgctgctcaaggtaaaatctttgaaggatatgcaaacgtactataatttataaaaaa                                                                                                                                         >  2:143506‑M1/137‑141 (MQ=255)   gtttagaaaaaggtattccaacagttgtaggtgtagaaaaagctgttaaaaacataagcaataacatgttagttacgattgatgctgctcaaggtaaaatctttgaaggatatgcaaacgtactataatttataAAAAAAc                                                                                                                                       <  1:552243‑M1/7‑1 (MQ=255)   cAAAGTAATATGAGTGAAAGTTTGAAGGTGATAATGTACATGTATAAAAGATATAAACATTTATATAGATTGCCATTCATACACTATCATTATCAAATAACCTATTAATTACGTCATAAAATACCAGATGAACCAAAAAAc                                                                                                                                       >  1:391266/1‑141 (MQ=255)   cAAAGTAATATGAGTGAAAGTTTGAAGGTGATAATGTACATGTATAAAAGATATAAACATTTATATAGATTGCCATTCATACACTATCATTATCAAATAACCTATTAATTACGTCATAAAATACCAGATGAACCAAAAAAc                                                                                                                                       >  2:434611/1‑141 (MQ=255)      aGTAATATGAGTGAAAGTTTGAAGGTGATAATGTACATGTATAAAAGATATAAACATTTATATAGATTGCCATTCATACACTATCATTATCAAATAACCTATTAATTACGTCATAAAATACCAGATGAACCAAAAAACgtc                                                                                                                                    >  2:651344/1‑139 (MQ=255)       gTAATATGAGTGAAAGTTTGAAGGTGATAATGTACATGTATAAAAGATATAAACATTTATATAGATTGCCATTCATACACTATCATTATCAAATAACCTATTAATTACGTCATAAAATACCAGATGAACCAAAAAACGCCt                                                                                                                                   >  1:84871/1‑141 (MQ=255)             tGAGTGAAAGTTTGAAGGTGATAATGTACATGTATAAAAGATATAAACATTTATATAGATTGCCATTCATACACTATCATTATCAAATAACCTATTAATTACGTCATAAAATACCAGATGAACCAAAAAACGCCTTTCCAt                                                                                                                             >  1:672798/1‑141 (MQ=255)               aGTGAAAGTTTGAAGGTGATAATGTACATGTATAAAAGATATAAACATTTATATAGATTGCCATTCATACACTATCATTATCAAATAACCTATTAATTACGTCATAAAATACCAGATGAACCAAAAAACGCCTTTCCAttg                                                                                                                           <  1:295355/141‑1 (MQ=255)                  aaaaGTTTGAAGGTGATAATGTACATGTATAAAAGATATAAACATTTATATAGATTGCCATTCATACACTATCATTATCAAATAACCTATTAATTACGTCATAAAATACCAAAAAAACAAAAAAACGCCTTTCCAttgttg                                                                                                                        <  2:612857/140‑1 (MQ=255)                    aaGTTTGAAGGTGATAATGTACATGTATAAAAGATATAAACATTTATATAGATTGCCATTCATACACTATCATTATCAAATAACCTATTAATTACGTCATAAAATACCAGATGAACCAAAAAACGCCTTTCCATTGTTGAt                                                                                                                      >  2:441108/1‑141 (MQ=255)                         tGAAGGTGATAATGTACATGTATAAAAGATATAAACATTTATATAGATTGCCATTCATACACTATCATTATCAAATAACCTATTAATTACGTCATAAAATACCAGATGAACCAAAAAACGCCTTTCCATTGTTTATAAATg                                                                                                                 >  2:372841/1‑141 (MQ=255)                          gAAGGTGATAATGTACATGTATAAAAGATATAAACATTTATATAGATTGCCATTCATACACTATCATTATCAAATAACCTATTAATTACGTCATAAAATACCAGATGAACCAAAAAACGCCTTTCCATTGTTGATAAATgg                                                                                                                <  1:526665/141‑1 (MQ=255)                            aGGTGATAATGTACATGTATAAAAGATATAAACATTTATATAGATTGCCATTCATACACTATCATTATCAAATAACCTATTAATTACGTCATAAAATACCAGATGAACCAAAAAACGCCTTTCCATTGTTGATAAATGGaa                                                                                                              >  1:446330/1‑141 (MQ=255)                             gtaggtgtagaaaaagctgttaaaaacataagcaataacatgttagttacgattgatgctgctcaaggtaaaatctttgaaggatatgcaaacgtactataatttataAAAAAACGCCTTTCCATTGTTGATAAATGGaaa                                                                                                             >  1:198549‑M1/109‑141 (MQ=255)                              gTGATAATGTACATGTATAAAAGATATAAACATTTATATAGATTGCCATTCATACACTATCATTATCAAATAACCTATTAATTACGTCATAAAATACCAGATGAACCAAAAAACGCCTTTCCATTGTTGATAAATGGAAAg                                                                                                            <  1:698441/141‑1 (MQ=255)                               tGATAATGTACATGTATAAAAGATATAAACATTTATATAGATTGCCATTCATACACTATCATTATCAAATAACCTATTAATTACGTCATAAAATACCAGATGAACCAAAAAACGCCTTTCCATTGTTGATAAATGGAAAGa                                                                                                           <  1:475543/141‑1 (MQ=255)                                       tACATGTATAAAAGATATAAACATTTATATAGATTGCCATTCATACACTATCATTATCAAATAACCTATTAATTACGTCATAAAATACCAGATGAACCAAAAAACGCCTTTCCATTGTTGATAAATGGAAAGACGtttttt                                                                                                   <  1:379286/141‑1 (MQ=255)                                       tACATGTATAAAAGATATAAACATTTATATAGATTGCCATTCATACACTATCATTATCAAATAACCTATTAATTACGTCATAAAATACCAGATGAACCAAAAAACGCCTTTCCATTGTTGATAAATGGAAAGACGtttttt                                                                                                   >  2:621565/1‑141 (MQ=255)                                          aTGTATAAAAGATATAAACATTTATATAGATTGCCATTCATACACTATCATTATCAAATAACCTATTAATTACGTCATAAAATACCAGATGAACCAAAAAACGCCTTTCCATTGTTGATAAATGGAAAGACGTTTTTTtat                                                                                                >  2:311191/1‑141 (MQ=255)                                                   aGATATAAACATTTATATAGATTGCCATTCATACACTATCATTATCAAATAACCTATTAATTACGTCATAAAATACCAGATGAACCAAAAATCGCCTTTCCATTGTTGATAAATGGAAAGACG‑TTTTTTATAAATTATAGt                                                                                      <  2:107098/141‑1 (MQ=255)                                                      tataAACATTTATATAGATTGCCATTCATACACTATCATTATCAAATAACCTATTAATTACGTCATAAAATACCAGATGAACCAAAAAACGCCTTTCCATTGTTGATAAATGGAAAGACGTTTTTTTATAAATTATATTaa                                                                                    >  1:582463/1‑140 (MQ=255)                                                                  tataGATTGCCATTCATACACTATCATTATCAAATAACCTATTAATTACGTCATAAAATACCAGATGAACCAAAAAACGCCTTTCCATTGTTGATAAATGGAAAGACGTTTTTTTATAAATTATAGTACGTTTGCATATcc                                                                        <  1:441108/141‑1 (MQ=255)                                                                   ataGATTGCCATTCATACACTATCATTATCAAATAACCTATTAATTACGTCATAAAATACCAGATGAACCAAAAAACGCCTTTCCATTGTTGATAAATGGAAAGACGTTTTTTTATAAATTATAGTACGTTTGCATATCCt                                                                       >  2:552243/1‑141 (MQ=255)                                                                    taGATTGCCATTCATACACTAACATTATCAAATAACCTATTAATTACGTCATAAAATACCAGATGAACAAAAAAACGCCTTTCCATTGTTGATAAAAGGAAACACGTTTTTTTATAAATTATATTACGTTTGCATATCCtt                                                                      >  2:357137/1‑141 (MQ=255)                                                                      gATTGCCATTCATACACTATCATTATCAAATAACCTATTAATTACGTCATAAAATACCAGATGAACCAAAAAACGCCTTTCCATTGTTGATAAATGGAAAGACGTTTTTTTATAAATTATAGTACGTTTGCATATCCTTCa                                                                    <  2:251317/141‑1 (MQ=255)                                                                       aTTGCCATTCATAAACTATCATTATCAAATAACCTATTTAGTACGTCATAAAATACCAGATGAACCAAAAGACGCCTTTCCATTGTTGATAAATGGAAAGACGTTTTTTTATAAATTATAGTACGTTTGCATATCCTTCaa                                                                   <  1:491529/141‑1 (MQ=255)                                                                         tGCCATTCATACACTATCATTATCAAATAACCTATTAATTACGTCATAAAATACCAGATGAACCAAAAAACGCCTTTCCATTGTTGATAAATGGAAAGACGTTTTTTTATAAATTATAGTACGTTTGCATATCCTTCAAAg                                                                 >  2:350103/1‑141 (MQ=255)                                                                          gCCATTCATACACTATCATTATCAAATAACCTATTAATTACGTCATAAAATACCAGATGAACCAAAAAACGCCTTTCCATTGTTGATAAATGGAAAGACGTTTTTTTATAAATTATAGTACGTTTGCATATCCTTCAAAGa                                                                <  2:682003/141‑1 (MQ=255)                                                                               tCATACACTATCATTATCAAATAACCTATTAATTACGTCATAAAATACCAGATGAACCAAAAAACGCCTTTCCATTGTTGATAAATGGAAAGACGTTTTTTTATAAATTATAGTACGTTTGCATATCCTTCAAAGATTTTa                                                           <  2:630389/141‑1 (MQ=255)                                                                                 aTACACTATCATTATCAAATAACCTATTAATTACGTCATAAAATACCAGATGAACCAAAAAACGCCTTTCCATTGTTGATAAATGGAAAGACGTTTTTTTATAAATTATAGTACGTTTGCATATCCTTCAAAGATTTTAcc                                                         <  1:353222/141‑1 (MQ=255)                                                                                   acacTATCATTATCAAATAACCTATTAATTACGTCATAAAATACCAGATGAACCAAAATACGCCTTTCCATTGTTGATAAATGGAAAGACGTTTTTTTATAAATTATAGTACGTTTGCATATCCTTCAAAGATTTTACCtt                                                       <  2:499415/141‑1 (MQ=255)                                                                                    cacTATCATTATCAAATAACCTATTAATTACGTCATAAAATACCAGATGAACCAAAAAACGCCTTTCCATTGTTGATAAATGGAAAGACGTTTTTTTATAAATTATAGTACGTTTGCATATCCTTCAAAGATTTTACCTTg                                                      >  2:544774/1‑141 (MQ=255)                                                                                    cacTATCATTATCAAATAACCTATTAATTACGTCATAAAATACCAGATGAACCAAAAAACGCCTTTCCATTGTTGATAAATGGAAAGACGTTTTTTTATAAATTATAGTACGCTTGCATATCCTTCAAAGATTTTACCTTg                                                      >  1:628194/1‑141 (MQ=255)                                                                                           aTTATCAAATAACCTATTAATTACGTCATAAAATACCAGATGAACCAAAAAACGCCTTTCCATTGTTGATAAATGGAAAGACGTTTTTTTATAAATTATAGTACGTTTGCATATCCTTCAAAGATTTTACCTTGAgcagca                                               >  2:108057/1‑141 (MQ=255)                                                                                              aTCAAATAACCTATTAATTACGTCATAAAATACCAGATGAACCAAAAAACGCCTTTCCATTGTTGATAAATGGAAAGACGTTTTTTTATAAATTATAGTACGTTTGCATATCCTTCAAAGATTTTACCTTGAGCAGCATCa                                            <  1:344875/141‑1 (MQ=255)                                                                                                cAAATAACCTATTAATTACGTCATAAAATACCAGATGAACCAAAAAACGCCTTTCCATTTTTGATAAATGGAAAGACGTGTGTTTATAAATTATAGTACGTTTGCATAGCCGTCAAAGATTTGACCTTGAGCAGCATCAAt                                          >  2:326339/1‑141 (MQ=255)                                                                                                   aTAACCTATTAATTACGTCATAAAATACCAGATGAACCAAAAAACGCCTTTCCATTGTTGATAAATGGAAAGACGTTTTTTTATAAATTATAGTACGTTTGCATATCCTTCAAAGATTTTACCTTGAGCAGCATCAATCGt                                       <  1:434611/141‑1 (MQ=255)                                                                                                      tctttgaaggatatgcaaacgtactataatttataAAAAAACGTCTTTCCATTTATCAACAATGGAAAGGCGTTTTTTTATAAATTATAGTACGTTTGCATATCCTTCAAAGATTTTACCTTGAGCAGCATCAATCGtaac                                    <  1:287130‑M1/106‑1 (MQ=255)                                                                                                        cTATTAATTACGTCATAAAATACCAGATGAACCAAAAAACGCCTTTCCATTGTTGATAAATGGAAAGACGTTTTTTTATAAATTATAGTACGTTTGCATATCCTTCAAAGATTTTACCTTGAGCAGCATCAATCGtaacta                                  >  1:69505/1‑141 (MQ=255)                                                                                                         ttgaaggatatgcaaacgtactataatttataAAAAAACGCCTTTCCATTGTTGATAAATGGAAAGAc                                                                                                          >  2:58733‑M1/33‑68 (MQ=255)                                                                                                         ttgaaggatatgcaaacgtactataatttataAAAAAACGCCTTTCCATTGTTGATAAATGGAAAGAc                                                                                                          <  1:58733‑M1/36‑1 (MQ=255)                                                                                                            taattaCGTCATAAAATACCAGATGAACCAAAAAACGCCTTTCCATTGTTGATAAATGGAAAGACGTTTTTTTATAAATTATAGTACGTTTGCATATCCTTCAAAGATTTTACCTTGAGCAGCATCAATCGTAACTAACAt                              <  1:27616/141‑1 (MQ=255)                                                                                                                 aCGTCATAAAATACCAGATGAACCAAAAAACGCCTTTCCATTGTTGATAAATGGAAAGACGTTTTTTTATAAATTATAGTACGTTTGCATATCCTTCAAAGATTTTACCTTGAGCAGCATCAATCGTAACTAACATGTTAt                         >  1:497582/1‑141 (MQ=255)                                                                                                                   gTCATAAAATACCAGATGAACCAAAAAACGCCTTTCCATTGTTGATAAATGGAAAGACGTTTTTTTATAAATTATAGTACGTTTGCATATCCTTCAAAGATTTTACCTTGAGCAGCATCAATCGTAACTAACATGTTATTg                       >  1:284512/1‑141 (MQ=255)                                                                                                                   gTCATAAAATACCAGATGAACCAAAAAACGCCTTTCAATAGTTGATAAAGGGAAAGACGTATTTTTATAAATTATAGTACGTTTGCATATCCTTAAAAGATTTTAACTTGAGCAGCATCCATCGAAACTAACATGTTATTg                       >  2:328740/1‑141 (MQ=255)                                                                                                                    tCATAAAATACCAGATGAACCAAAAAACGCCTTTCCATTGTTGATAAATGGAAAGACGTTTTTTTATAAATTATAGTACGTTTGCATATCCTTCAAAGATTTTACCTTGAGCAGCATCAATCGTAACTAACATGTTATTGc                      <  1:552483/141‑1 (MQ=255)                                                                                                                         aaaTACCAGATGAACCAAAAAACGCCTTTCCATTGTTGATAAATGGAAAGACGTTTTTTTATAAATTATAGTACGTTTGCATATCCTTCAAAGATTTTACCTTGAGCAGCATCAATCGTAACTAACATGTTATTGCTTATg                 <  2:228701/141‑1 (MQ=255)                                                                                                                           aTACCAGATGAACCAAAAAACGCCTTTCCATTGTTGATAAATGGAAAGACGTTTTTTTATAAATTATAGTACGTTTGCATATCCTTCAAAGATTTTACCTTGAGCAGCATCAATCGTAACTAACATGTTATTGCTTATGtt               <  2:453067/141‑1 (MQ=255)                                                                                                                                 gATGAACCAAAAAACGCCTTTCCATTGTTGATAAATGGAAAGACGTTTTTTTATAAATTATAGTACGTTTGCATATCCTTCAAAGATTTTACCTTGAGCAGCATCAATCGTAACTAACATGTTATTGCTTATGTTTTTAAc         <  2:672798/141‑1 (MQ=255)                                                                                                                                      aCCAAAAAACGCCTTTCCATTGTTGATAAATGGAAAGACGTTTTTTTATAAATTATAGTACGTTTGCATATCCTTCAAAGATTTTACCTTGAGCAGCATCAATCGTAACTAACATGTTATTGCTTATGTTTTTAACAGCtt    <  2:84871/141‑1 (MQ=255)                                                                                                                                        cAAAAAACGCCTTTCCATTGTTGATAAATGGAAAGACGTTTTTTTATAAATTATAGTACGTTTGCATATCCTTCAAAGATTTTACCTTGAGCAGCATCAATCGTAACTAACATGTTATTGCTTATGTTTTTAACAGCtttt  >  1:621178/1‑141 (MQ=255)                                                                                                                                        cAAAAAACGCCTTTCCATTGTTGATAAATGGAAAGACGTTTTTTTATAAATTATAGTACGTTTGCATATCCTTCAAAGATTTTACCTTGAGCAGCATCAATCGTAACTAACATGTTATTACTTATGTTTTTAAAACCtttt  >  2:503111/1‑141 (MQ=255)                                                                                                                                         |                                                                                                                                            TCCAAAGTAATATGAGTGAAAGTTTGAAGGTGATAATGTACATGTATAAAAGATATAAACATTTATATAGATTGCCATTCATACACTATCATTATCAAATAACCTATTAATTACGTCATAAAATACCAGATGAACCAAAAAACGCCTTTCCATTGTTGATAAATGGAAAGACGTTTTTTTATAAATTATAGTACGTTTGCATATCCTTCAAAGATTTTACCTTGAGCAGCATCAATCGTAACTAACATGTTATTGCTTATGTTTTTAACAGCTTTT  >  CP000730/1805168‑1805443

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.