New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	= 940821	22 (0.720)	3 (0.100)	3/258	4.5	13.0%	intergenic (+2/+54)	comA/USA300HOU_0905	hypothetical protein/hypothetical protein
	?	CP000730	= 940872	19 (0.650)					intergenic (+53/+3)	comA/USA300HOU_0905	hypothetical protein/hypothetical protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

CTAAAGATGGTCGTGTTACTGCGACAGCTGAAATTATTCATCGAGGTAAGTCGACACATGTATGGGATATAAAAATTAAGAATGACAAAGAACAATTAATTACAGTTATGCGTGGTACAGTTGCTATTAAACCTTTAAAATAAAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP000730/940677‑940821 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ataaaaAAACTGCTAGCCGTAGTTATGAATATCTCATAACATTTCAGCTAGCAGTTCTTTTATTTTAAAGGTTTAATAGCAACTGTACCACGCATAACTGTAATTAATTGTTCTTTGTCATTCTTAATTTTTATATCCCATAC  <  CP000730/940872‑940736                                                                                                                                                                                                                                                                                            CTAAAGATGGTCGTGTTACTGCGACAGCTGAAATTATTCATCGAGGTAAGTCGACACATGTATGGGATATAAAAATTAAGAATGACAAAGAACAATTAATTACAGTTATGCGTGGTACAGTTGCTATTAAACCTTTAAAAT                                                                                                                                               <  2:73195/141‑1                                                           TGTATGGGATATAAAAATTAAGAATGACAAAGAACAATTAATTACAGTTATGCGTGGTACAGTTGCTATTAAACCTTTAAAATAAAAAAACTGCTAGCCGTAGTTATGAATATCTCATAACATTTCAGCTAGCAGTTCTTT                                                                                     <  2:17064/141‑1                                                                                                  AATTACAGTTATGCGTGGTACAGTTGCTATTAAACCTTTAAAATAAAAAAACTGCTAGCCGTAGTTATGAATATCTCATAACATTTCAGCTAGCAGTTCTTTT                                                                                    <  1:173605/103‑1                                                                                                  AATTACAGTTATGCGTGGTACAGTTGCTATTAAACCTTTAAAATAAAAAAACTGCTAGCCGTAGTTATGAATATCTCATAACATTTCAGCTAGCAGTTCTTTT                                                                                    >  2:173605/1‑103                                                                                                                                              AAAAAAACTGCTAGCCGTAGTTATGAATATCTCATAACATTTCAGCTAGCAGTTCTTTTATTTTAAAGGTTTAATAGCAACTGTACCACGCATAACTGTAATTAATTGTTCTTTGTCATTCTTAATTTTTATATCCCATAC  <  1:226718/141‑1                                                                                                                                                                                                                                                                                            CTAAAGATGGTCGTGTTACTGCGACAGCTGAAATTATTCATCGAGGTAAGTCGACACATGTATGGGATATAAAAATTAAGAATGACAAAGAACAATTAATTACAGTTATGCGTGGTACAGTTGCTATTAAACCTTTAAAATAAAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP000730/940677‑940821 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ataaaaAAACTGCTAGCCGTAGTTATGAATATCTCATAACATTTCAGCTAGCAGTTCTTTTATTTTAAAGGTTTAATAGCAACTGTACCACGCATAACTGTAATTAATTGTTCTTTGTCATTCTTAATTTTTATATCCCATAC  <  CP000730/940872‑940736

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.