New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	= 690094	27 (0.890)	3 (0.110)	3/252	4.4	10.1%	intergenic (‑23/+12)	USA300HOU_0631/USA300HOU_0632	hypothetical membrane protein/hypothetical membrane protein
	?	CP000730	= 690115	28 (0.980)					coding (375/384 nt)	USA300HOU_0632	hypothetical membrane protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

CTGTTGATATAGACTCAGAACGAACACGATAATACGCCCAAACTTCGCCAGTTTTCGTTAATAACAAATTATCTCTTAAACCTGCATACGGTGCTTTTAAATTCATGTCATCCCTCCAATAAAAATAACCCCAATAGGGGCTATTTAAATGTTATTTTTTTATCATGATATTCTACTTCTTCATCATAACTTAATTTAACTTTTCTTAACTGCACATTAAAAACAAATATTACAAAATCCCATAAGAAGAAAAATAATTTCTTTC  >  CP000730/689966‑690230                                                                                                                                 |                                                                                                                                         cTGTTGATATAGACTCAGAACGAACACGATAATACGCCCAAACTTCGCCAGTTTTCGTTAATAACAAATTATCTCTTAAACCTGCATACGGTGCTTTTAAATTCATGTCATCCCTCCAATAAAAATAACCCCAATAGGGGc                                                                                                                              >  2:280721/1‑141 (MQ=255)     tGATATAGACTCAGAACGAACACGATAATACGCCCAAACTTCGCCAGTTTTCGTTAATAACAAATTATCTCTTAAACCTGCATACGGTGCTTTTAAATTCATGTCATCCCTCCAATAAAAATAACCCCAATAGGGGCTAtt                                                                                                                          >  2:288196/1‑141 (MQ=255)           aGACTCAGAACGAACACGATAATACGCCCAAACTTCGCCAGTTTTCGTTAATAACAAATTATCTCTTAAACCTGCATACGGTGCTTTTAAATTCATGTCATCCCTCCAATAAAAATAACCCCAATAGGGGCTATTTAAATg                                                                                                                    >  1:80371/1‑141 (MQ=255)                                ataCGCCCAAACTTCGCCAGTTTTCGTTAATAACAAATTATCTCTTAAACCTGCATACGGTGCTTTTAAATTCATGTCATCCCTCCAATAAAAATAACCCCAATAGGGGCTATTTAAATGTTATTTTTTTATCATTATAtt                                                                                               >  2:260920/1‑141 (MQ=255)                                 taCGCCCAAACTTCGCCAGTTTTCGTTAATAACAAATTATCTCTTAAACCTGCATACGGTGCTTTTAAATTCATGTCATCCCTCCAATAAAAATAACCCCAATAGGGGCTATTTAAATGTTATTTTTTTATCATGATATTc                                                                                              <  2:17145/141‑1 (MQ=255)                                 taCGCCCAAACTTCGCCAGTTTTCGTTAATAACAAATTATCTCTTAAACCTGCATACGGTGCTTTTAAATTCATGTCATCCCTCCAATAAAAATAACCCCAATAGGGGCTATTTAAATGTTATTTTTTTATCATGATATTc                                                                                              <  2:192237/141‑1 (MQ=255)                                        aaaCTTCGCCAGTTTTCGTTAATAACAAATTATCTCTTAAACCTGCATACGGTGCTTTTAAATTCATGTCATCCCTCCAATAAAAATAACCCCAATAGGGGCTATTTAAATGTTATTTTTTTATCATGATATTCTActtct                                                                                       <  2:232514/141‑1 (MQ=255)                                               gCCAGTTTTCGTTAATAACAAATTATCTCTTAAACCTGCATACGGTGCTTTTAAATTCATGTCATCCCTCCAATAAAAATAAccc                                                                                                                                        <  2:293675/85‑1 (MQ=255)                                               gCCAGTTTTCGTTAATAACAAATTATCTCTTAAACCTGCATACGGTGCTTTTAAATTCATGTCATCCCTCCAATAAAAATAAccc                                                                                                                                        >  1:293675/1‑85 (MQ=255)                                                ccAGTTTTCGTTAATAACAAATTATCTCTTAAACCTGCATACGGTGCTTTTAAATTCATGTCATCCCTCCAATAAAAATAACCCCAATAGGGGCTATTTAAATGTTATTTTTTTATCATGATATTCTACTTCTTCATCATa                                                                               >  1:234529/1‑141 (MQ=255)                                                  aGTTTTCGTTAATAACAAATTATCTCTTAAACCTGCATACGGTGCTTTTAAATTCATGTCATCCCTCCAATAAAAATAACCCCAATAGGGGCTATTTAAATGTTATTTTTTTATCATGATATTCTACTTCTTCATCATAAc                                                                             <  2:211862/141‑1 (MQ=255)                                                                   aaTTATCTCTTAAACCTGCATACGGTGCTTTTAAATTCATGTCATCCCTCCAATAAAAATAACCCCAATAGGGGCTATTTAAATGTTATTTTTTTATCATGATATTCTACTTCTTCATCATAACTTAATTTAACTTTTCtt                                                            <  1:280721/141‑1 (MQ=255)                                                                       aTCTCTTAAACCTGCATACGGTGCTTTTAAATTCATGTCATCCCTCCAATAAAAATAACCCCAATAGGGGCTATTTAAATGTTATTTTTTTATCATGATATTCTACTTCTTCATCATAACTTAATTTAACTTTTCTTAACt                                                        >  1:103979/1‑141 (MQ=255)                                                                        tctcTTAAACCTGCATACGGTGCTTTTAAATTCATGTCATCCCTCCAATAAAAATAACCCGAATAGGGGCGATTAAAAGGGGAGTTGATTATCATGATATTCTACTTCTTCATCATAACGTAATTTAACTGTTCTTAACTg                                                       >  1:90135/1‑141 (MQ=255)                                                                         ctctTAAACCTGCATACGGTGCTTTTAAATTCATGTCATCCCTCCAATAAAAATAACCCCAATAGGGGCTATTTAAATGTTATTTTTTTATCATGATATTCTACTTCTTCATCATAACTTAATTTAACTTTTCTTAACTGc                                                      <  1:137838/141‑1 (MQ=255)                                                                           ctTAAACCTGCATACGGTGCTTTTAAATTCATGTCATCCCTCCAATAAAAATAACCCCAATAGGGGCTATTTAAATGTTATTTTTTTATCATGATATTCTACTTCTTCATCATAACTTAATTTAACTTTTCTTAACTGcac                                                    >  1:151357/1‑141 (MQ=255)                                                                                    gCATACGGTGCTTTTAAATTCATGTCATCCCTCCAATAAAAATAACCCCAATAGGGGCTATTTAAATGTTATTTTTTTATCATGATATTCTACTTCTTCATCATAACTTAATTTAACTTTTCTTAACTGCACATTAAAAAc                                           <  1:363230/141‑1 (MQ=255)                                                                                                     aTTCATGTCATCCCTCCAATAAAAATAACCCCAATAGGGGCTATTTAAATGTTATTTTTTTATCATGATATTCTACTTCTTCATCATAACTTAATTTAACTTTTCTTAACTGCACATTAAAAACAAATATTACAAAATccc                          <  1:313236/141‑1 (MQ=255)                                                                                                       tCATGTCATCCCTCCAATAAAAATAACCCCAATAGGGGCTATTTAAATGTTATTTTTTTATCATGATATTCTACTTCTTCATCATAACTTAATTTAACTTTTCTTAACTGCACATTAAAAACAAATATTACAAAATCCCAt                        >  1:194789/1‑141 (MQ=255)                                                                                                         aTGTCATCCCTCCAATAAAAATAACCCCAATAGGGGCTATTTAAATGTTATTTTTTTATCATGATATTCTACTTCTTCATCATAACTTAATTTAACTTTTCTTAACTGCACATTAAAAACAAATATTACAAAATCCCATaa                      >  1:37484/1‑141 (MQ=255)                                                                                                            tCATCCCTCCAATAAAAATAACCCCAATAGGTGCTATTTAAATGTTATTTTTTTATCATGATATTCTACTTCTTCATCATAACTTAATTTAACTTTTCTTAACTGCACATTAAAAACAAATATTACAAAATCCCATaagaa                   <  1:205183/141‑1 (MQ=255)                                                                                                             cgtgccTGCAATGAATATAAACCCAATAGGGGCTATTTAAATGTTATTTTTTTATCATGATATTCTACTTCTTGATTATAATGTTGTTTAATTTTTCTTAACTGCACATTATATACCATTATTACATAATCCCTTaagtag                  <  2:256206/137‑1 (MQ=255)                                                                                                                   accAATAAAAATAACCCCAATAGGGGCTATTTAAATGTTATTTTTTTATCATGATATTCTACTTCTTCATCATAACTTAATTTAACTTTCCTTAACTGCACATTAAAAACAAATATTACAAAATCCCATAAGAAGAAAaat            <  2:288391/140‑1 (MQ=255)                                                                                                                    ccAATAAAAATAACCCCAATAGGGGCTATTTAAATGTTATTTTTTTATCATGATATTCTACTTCTTCATCATAACTTAATTTAACTTTTCTTAACTGCACATTAAAAACAAATATTACAAAATCCCATAAGAAGAAAaata           >  2:48596/1‑141 (MQ=255)                                                                                                                       aTAAAAATAACCCCAATAGGGGCTATTTAAATGTTATTTTTTTATCATGATATTCTACTTCTTCATCATAACTTAATTTAACTTTTc                                                              <  1:114389/87‑1 (MQ=255)                                                                                                                       aTAAAAATAACCCCAATAGGGGCTATTTAAATGTTATTTTTTTATCATGATATTCTACTTCTTCATCATAACTTAATTTAACTTTTc                                                              >  2:114389/1‑87 (MQ=255)                                                                                                                             aTAACCCCAATAGGGGCTATTTAAATGTTATTTTTTTATCATGATATTCTACTTCTTCATCATAACTTAATTTAACTTTTCTTAACTGCACATTAAAAACAAATATTACAAAATCCCATAAGAAGAAAAATAAtttctttc  >  2:252918/1‑141 (MQ=255)                                                                                                                                 |                                                                                                                                         CTGTTGATATAGACTCAGAACGAACACGATAATACGCCCAAACTTCGCCAGTTTTCGTTAATAACAAATTATCTCTTAAACCTGCATACGGTGCTTTTAAATTCATGTCATCCCTCCAATAAAAATAACCCCAATAGGGGCTATTTAAATGTTATTTTTTTATCATGATATTCTACTTCTTCATCATAACTTAATTTAACTTTTCTTAACTGCACATTAAAAACAAATATTACAAAATCCCATAAGAAGAAAAATAATTTCTTTC  >  CP000730/689966‑690230

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.