mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 54 shown, sorted by frequency from high to low) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP000730 | 35,876 | 0 | C | T | 77.6% | 31.2 / 31.6 | 59 | intergenic (+107/+1) | rlmH/tpn | hypothetical protein/IS431mec transposase |
| * | CP000730 | 1,929,918 | 0 | A | G | 69.8% | 81.5 / 36.2 | 53 | intergenic (‑1001/‑167) | USA300HOU_1794/USA300HOU_1796 | hypothetical protein/hypothetical protein |
| * | CP000730 | 35,858 | 0 | T | A | 69.7% | ‑6.0 / 28.8 | 33 | intergenic (+89/+19) | rlmH/tpn | hypothetical protein/IS431mec transposase |
| * | CP000730 | 1,929,925 | 0 | T | A | 69.4% | 88.2 / 40.1 | 49 | intergenic (‑1008/‑160) | USA300HOU_1794/USA300HOU_1796 | hypothetical protein/hypothetical protein |
| * | CP000730 | 1,929,928 | 0 | T | A | 69.4% | 82.6 / 43.3 | 49 | intergenic (‑1011/‑157) | USA300HOU_1794/USA300HOU_1796 | hypothetical protein/hypothetical protein |
| * | CP000730 | 1,929,930 | 0 | T | A | 69.4% | 77.3 / 45.7 | 49 | intergenic (‑1013/‑155) | USA300HOU_1794/USA300HOU_1796 | hypothetical protein/hypothetical protein |
| * | CP000730 | 1,929,917 | 0 | C | T | 68.5% | 61.7 / 44.5 | 54 | intergenic (‑1000/‑168) | USA300HOU_1794/USA300HOU_1796 | hypothetical protein/hypothetical protein |
| * | CP000730 | 35,850 | 0 | C | T | 67.7% | ‑6.3 / 28.2 | 34 | intergenic (+81/+27) | rlmH/tpn | hypothetical protein/IS431mec transposase |
| * | CP000730 | 35,834 | 0 | A | . | 65.7% | 35.3 / 56.4 | 35 | intergenic (+65/+43) | rlmH/tpn | hypothetical protein/IS431mec transposase |
| * | CP000730 | 35,970 | 0 | T | C | 64.9% | 329.7 / 261.8 | 268 | E194E (GAA→GAG) | tpn | IS431mec transposase |
| * | CP000730 | 36,087 | 0 | A | G | 63.2% | 363.0 / inf | 387 | C155C (TGT→TGC) | tpn | IS431mec transposase |
| * | CP000730 | 36,413 | 0 | C | T | 62.0% | 104.1 / 242.3 | 209 | V47I (GTC→ATC) | tpn | IS431mec transposase |
| * | CP000730 | 36,124 | 0 | G | A | 61.7% | 165.6 / inf | 314 | A143V (GCT→GTT) | tpn | IS431mec transposase |
| * | CP000730 | 36,269 | 0 | C | T | 61.6% | 213.8 / inf | 392 | A95T (GCA→ACA) | tpn | IS431mec transposase |
| * | CP000730 | 36,444 | 0 | C | T | 61.0% | 51.0 / 166.7 | 141 | R36R (AGG→AGA) | tpn | IS431mec transposase |
| * | CP000730 | 1,929,873 | 0 | C | A | 60.3% | 24.1 / 82.8 | 64 | intergenic (‑956/‑212) | USA300HOU_1794/USA300HOU_1796 | hypothetical protein/hypothetical protein |
| * | CP000730 | 36,315 | 0 | G | A | 60.1% | 227.3 / inf | 399 | Y79Y (TAC→TAT) | tpn | IS431mec transposase |
| * | CP000730 | 35,814 | 0 | A | . | 59.0% | 48.4 / 79.7 | 39 | intergenic (+45/+63) | rlmH/tpn | hypothetical protein/IS431mec transposase |
| * | CP000730 | 35,817 | 0 | A | T | 59.0% | 15.0 / 48.9 | 39 | intergenic (+48/+60) | rlmH/tpn | hypothetical protein/IS431mec transposase |
| * | CP000730 | 1,929,866 | 0 | G | T | 57.8% | 6.9 / 100.9 | 64 | intergenic (‑949/‑219) | USA300HOU_1794/USA300HOU_1796 | hypothetical protein/hypothetical protein |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP000730 | 895785 = | 32 (0.920) | 3 (0.100) | 3/260 | 3.2 | 9.1% | coding (806/822 nt) | metQ | ABC superfamily ATP binding cassette transporter, binding protein |
| ? | CP000730 | = 909740 | 32 (1.040) | intergenic (‑663/‑371) | ear/USA300HOU_0868 | Ear protein/hypothetical protein | |||||