New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	= 1205323	45 (0.960)	29 (0.870) +AGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAG	8/190	3.4	47.4%	intergenic (+459/‑365)	yfiE/lspA	possible lactoylglutathione lyase/A8 family signal peptidase II
	?	CP000730	= 1443739	NA (NA)					intergenic (‑312/+41)	USA300HOU_1341/brnQ2	IS1272 transposase/LIVCS family branched chain amino acid:cation symporter
Rejected: Coverage evenness skew score above cutoff.

ACCGAGGCTGAGACGGCACCCTAGGAAAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGATATTTTCTAATTGAAAATTATCTTACTGCTGTTTTTTTAGGGATTTATGTCCCAACCTCTTTTATATTATTCGTTATTCCTGTTGATATTTAATTGGATCTTGTTTTACAAATATGCCGACTAGATAGCCTAATATCGTTGCAATAATTGCTACTGGGAACCACT  >  CP000730/1443629‑1443871                                                                                                               |                                                                                                                                     actgAGGCTGAGACGGCTCATTAGAAAAGCGAAGCCATTCGATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGATATTTTCTAATTGAAAATTATCTTACTGCTGTTTTTTTAGGGATTTATGTCCCAACCTCtttt                                                                                                        <  1:373529/138‑1 (MQ=11) aCCGAGGCTGAGACGGCACCCTAGGAAAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGATATTTTCTAATTGAAAATTATCTTACTGCTGTTTTTTTAGGGATTTATGTCCCAACCTCtttt                                                                                                        <  1:373427/141‑1 (MQ=35)  ccGAGGCTGAGACGGCACCCTAGGAAAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGATATTTTCTAATTGAAAATTATCTTACTGCTGTTTTTTTATTTTTTTATTTCCCAACCTCTTTta                                                                                                       >  2:125395/1‑141 (MQ=11)       gCTGAGACGGCACCCTAGGAAAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGATATTTTCTAATTGAAAATTATCTTACTGCTGTTTTTTTAGGGATTTATGTCCCAACCTCTTTTAtatta                                                                                                  >  1:47131/1‑141 (MQ=38)             aCGGCACCCTAGGAAAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGATATTTTCTAATTGAAAATTATCTTACTGCTGTTTTTTTAGGGATTTATGTCCCAACCTCTTTTATATTATTCGtt                                                                                            >  2:70021/1‑141 (MQ=255)              aggCACACTAAGAAAGCGAAGCCATTCTATTCGAATTATTGTATAAATAGAGAACAGCAGTAAGATATTTTCTAATTGAAAATTATCTTACTTCTGTTTTTTTAGGGATTTATGTCCCAACCTCTTTTATATTATTCGTTa                                                                                           <  2:144909/140‑1 (MQ=14)                gCACCCTAGGAAAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGATATTTTCTAATTGAAAATTATCTTACTGCTGTTTTTTTAGGGATTTATGTCCCAACCTCTTTTATATTATTCGTTAtt                                                                                         <  2:373369/141‑1 (MQ=255)                 cACCCTAGAAAAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGATATTTTCTAATTGAAAATTATCTTACTGCTGTTTTTTTAGGGATTTATGTCACAACCTCTTTTATATTATTCGTTATTc                                                                                        <  2:41562/141‑1 (MQ=255)                   cccTAGGAAAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGATATTTTCTAATTGAAAATTATCTTACTGCTGTTTTTTTAGGGATTTATGTCCCAACCTCTTTTATATTATTCGTTATTCCt                                                                                      <  1:288600/141‑1 (MQ=255)                    ccTAGGAAAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGATATTTTCTAATTGAAAATTATCTTACTGCTGTTTTTTTAGGGATTTATGTCCCAACCTCTTTTATATTATTCGTTATTCCTg                                                                                     <  1:422926/141‑1 (MQ=255)                         gAAAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGATATTTTCTAATTGAAAATTATCTTACTGCTGTTTTTTTAGGGATTTATGTCCCAACCTCTTTTATATTATTCGTTATTCCTGTTGat                                                                                >  2:489320/1‑141 (MQ=255)                         gAAAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGATATTTTCTAAGTGAAAATTATCTTACTGCTGTTTGTTTAGGTATTTATGTCCCAACCTCTTTTATATTATTCGTTATACCTGTCGat                                                                                >  2:146789/1‑141 (MQ=14)                                aaGCCATTCAATACGAAGTATTGTATAAATAGGGAACAGCAGTAAGATATTTTCTAATTGAAAATTATCTTACTGCTGTTTTTTTAGGGATTTATGTCCCAACCTCTTTTATATTATTCTTTATTCCTGTTGATATTTAAt                                                                         >  2:61932/1‑141 (MQ=255)                                aaGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGATATTTTCTAATTGAAAATTATCTTACTGCTGTTTTTTTAGGGATTTATGTCCCAACCTCTTTTATATTATTCGTTATTCCTGTTGATATTTAAt                                                                         <  1:409659/141‑1 (MQ=255)                                    cATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGATATTTTCTAATTGAAAATTATCTTACTGCTGTTTTTTTAGGGATTTATGTCCCAACCTCTTTTATATTATTCGTTATTCCTGTTGATATTTAATTGGa                                                                     >  1:481418/1‑141 (MQ=255)                                     aTTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGATATTTTCTAATTGAAAATTATCTTACTGCTGTTTTTTTAGGGATTTATGTCCCAACCTCTTTTATATTATTCGTTATTCCTGTTGATATTTAATTGGAt                                                                    <  1:168971/141‑1 (MQ=255)                                        cAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGATATTTTCTAATTGAAAATTATCTTACTGCTGTTTTTTTAGGGATTTATGTCCCAACCTCTTTTATATTATTCGTTATTCCTGTTGATATTTAATTGGATCtt                                                                 <  2:183199/141‑1 (MQ=255)                                         aatacttcgTATTTTATAAATAGAGAACAGCAGTAAGATATTTTCTACTCGAAAATTATCTTACTGCTGTCTTTTTAGGGCTTTATGTCCCAACCTCTTTTATATTATTCGTTATTCCTGTTGATATTTAATTGGATCttt                                                                >  2:343823/9‑140 (MQ=18)                                            aCGAAGTATTGTATAAATAGCGAACAGCAGTAAGATATTTTCTAATTGAAAATTATCTTACTGCTGTTTTTTTAGGGATTTATGTCCCAACCTCTTTTATATTATTCGTTATTCCTGTTGATATTTAATTGGATCTTGttt                                                             <  1:253527/141‑1 (MQ=255)                                            aCGAAGTATTGTATAAATAGAGAACAGCAGTAAGATATTTTCTAATTGAAAATTATCTTACTGCTGTTTTTTTAGGGATTTATGTCCCAACCTCTTTTATATTATTCGTTATTCCTGTTGATATTTAATTGGATCTTGttt                                                             <  1:188460/141‑1 (MQ=255)                                                aGTATTGTATAAATAGAGAACAGCAGTAAGATATTTTCTAATTGAAAATTATCTTACTGCTGTTTTTTTAGGGATTTATGTCCCAACCTCTTTTATATTATTCGTTATTCCTGTTGATATTTAATTGGATCTTGTTTTACa                                                         >  2:323789/1‑141 (MQ=255)                                                               gagaACAGCAGTAAGATATTTTCTAATTGAAAATTATCTTACTGCTGTTTTTTTAGGGATTTATGTCCCAACCTCTTTTATATTATTCGTTATTCCTGTTGATATTTAATTGGATCTTGTTTTACAAATATGCCGACTAGa                                          <  2:77483/141‑1 (MQ=255)                                                                  aaCAGCAGTAAGATATTTTCTAATTGAAAATTATCTTACTGCTGTTTTTTTAGGGATTTATGTCCCAACCTCTTTTATATTATTCGTTATTCCTGTTGATATTTAATTGGATCTTGTTTTACAAATATGCCGACTAGATAg                                       >  2:373812/1‑141 (MQ=255)                                                                     agcagTAAGATATTTTCTAATTGAAAATTATCTTACTGCTGTTTTTTTAGGGATTTATGTCCCAACCTCTTTTATATTATTCGTTATTCCTGTTGATATTTAATTGGATCTTGTTTTACAAATATGCCGACTAGATAGCCt                                    <  2:180919/141‑1 (MQ=255)                                                                     agcagTAAGATATTTTCTAATTGAAAATTATCTTACTGCTGTTTTTTTAGGGATTTATGTCCCAACCTCTTTTATATTATTCGTTATTCCTGTTGATATTTAATTGGATCTTGTTTTACAAATATGCCGACTAGATAGCCt                                    <  2:579444/141‑1 (MQ=255)                                                                     agcagTAAGATATTTTCTAATTGAAAATTATCTTACTGCTGTTTTTTTAGGGATTTATGTCCCAACCTCTTTTATATTATTCGTTATTCCTGTTGATATTTAATTGGATCTTGTTTTACAAATATGCCGACTAGATAGCCt                                    >  1:184363/1‑141 (MQ=255)                                                                      gcagTAAGATATTTTCTAATTGAAAATTATCTTACTGCTGTTTTTTTAGGGATTTATGTCCCAACCTCTTTTATATTATTCGTTATTCCTGTTGATATTTAATTGGATCTTGTTTTACAAATATGCCGACTAGATAGCCTa                                   >  1:225687/1‑141 (MQ=255)                                                                        agTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTTTTTTAGGGATTTATGTCCCAACCTCTTTTATATTAGTCGTTATTCCTGTTGATATTTAATTGGATCTTGTTTTACAAATATGCCGACTAGATAGCCTAat                                 >  2:576063/1‑141 (MQ=37)                                                                                atTTTCTAATTGAAAATTATCTTACTGCTGTTTTTTTAGGGATTTATGTCCCAACCTCTTTTATATTATTCGTTATTCCTGTTGATATTTAATTGGATCTTGTTTTACAAATATGCCGACTAGATAGCCTAATATCGTTGc                         <  2:8393/141‑1 (MQ=255)                                                                                     ttAATTGAAAATTATCTTACTGCTGTTTTTTTAGGGATTTATGTCCCAACCTCTTTTATATTATTCGTTATTCCTGTTGATATTTAATTGGATCTTGTTTTACAAATATGCCGACTAGATAGCCTAATATCGTTGCaataa                    <  2:375772/140‑1 (MQ=255)                                                                                      tAATTGAAAATTATCTTACTGCTGTTTTTTTAGGGATTTATGTCCCAACCTCTTTTATATTATTCGTTATTCCTGTTGATATTTAATTGGATCTTGTTTTACAAATATGCCGACTAGATAGCCTAATATCGTTGCaataat                   <  1:61932/141‑1 (MQ=255)                                                                                         ttGAAAATTATCTTACTGCTGTTTTTTTAGGGATTTATGTCCCAACCTCTTTTATATTATTCGTTATTCCTGTTGATATTTAATTGGATCTTGTTTTACAAATATGCCGACTAGATAGCCTAATATCGTTGCAATAATTGc                <  1:70021/141‑1 (MQ=255)                                                                                             aaaTTATCTTACTGCTGTTTTTTTTGGTTTTTTTGTCCCAACCTCTTTTATATTATTCGTTATTCCTGTTGATATTTAATTGGATCTTGTTTTACAAATATGCCGACTAGATAGCCTAATATCGTTGCAATAATTGCTACt            >  2:246305/1‑141 (MQ=255)                                                                                             aaaTTATCTTACTGCTGTTTTTTTAGGGATTTATGTCCCAACCTCTTTTATATTATTCGTTATTCCTGTTGATATTTAATTGGATCTTGTTTTACAAATATGCCGACTAGATAGCCTAATATCGTTGCAATAATTGCTACt            <  1:373812/141‑1 (MQ=255)                                                                                               aTTATCTTACTGCTGTTTTTTTAGGGATTTATGTCCCAACCTCTTTTATATTATTCGTTATTCCTGTTGATATTTAATTGGATCTTGTTTTACAAATATGCCGACTAGATAGCCTAATATCGTTGCAATAATTGCTACTgg          <  2:564279/141‑1 (MQ=255)                                                                                               aTTATCTTACTGCTGTTTTTTTAGGGATTTATGTCCCAACCTCTTTTATATTATTCGTTATTCCTGTTGATATTTAATTGGATCTTGTTTTACAAATATGCCGACTAGATAGCCTAATATCGTTGCAATAATTGCTACTgg          <  1:559780/141‑1 (MQ=255)                                                                                                    cTTACTGCTGTTTTTTTAGGGATTTATGTCCCAACCTCTTTTATATTATTCGTTATTCCTGTTGATATTTAATTGGATCTTGTTTTACAAATATGCCGACTAGATAGCCTAATATCGTTGCAATAATTGCTACTGGGAAcc     <  1:125395/141‑1 (MQ=255)                                                                                                     ttACTGCTGTTTTTTTAGGGATTTATGTCTTATTCTCTTTTATATTATTCTTTATTCTTGTTGATATTTAATTTGATCTTGTTTTACAAATATGTCGACTAGATAGCCTAATATCGTTGCAATAATTGCTACTGGGAActa    >  1:506181/1‑139 (MQ=255)                                                                                                      tACTGCTGTTTTTTTAGGGATTTATGTCCCAACCTCTTTTATATTATTCGTTATTCCTGTTGATATTTAATTGGATCTTGTTTTACAAATATGCCGACTAGATAGCCTAATATCGTTGCAATAATTGCTACTGGGAACCAc   <  1:368550/141‑1 (MQ=255)                                                                                                       aCTGCTGTTTTTTTAGGGATTTATGTCCCAATCTCTTTTATATTATTCGTTATTCCTGTTGATATTTAATTGGATCTTGTTTTACAAATATGCCGACGAGATAGCCTAATATCGTTGCAATAATTGCTACTGGGAACCAct  <  2:550546/141‑1 (MQ=255)                                                                                                       aCTGCTGTTTTTTTAGGGATTTATGTCCCAACCTCTTTTATATTATTCGTTATTCCTGTTGATATTTAATTGGATCTTGTTTTACAAATATGCCGACTAGATAGCCTAATATCGTTGCAATAATTGCTACTGGGAACCAct  >  2:322046/1‑141 (MQ=255)                                                                                                               |                                                                                                                                     ACCGAGGCTGAGACGGCACCCTAGGAAAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGATATTTTCTAATTGAAAATTATCTTACTGCTGTTTTTTTAGGGATTTATGTCCCAACCTCTTTTATATTATTCGTTATTCCTGTTGATATTTAATTGGATCTTGTTTTACAAATATGCCGACTAGATAGCCTAATATCGTTGCAATAATTGCTACTGGGAACCACT  >  CP000730/1443629‑1443871

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.