New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	= 1144514	28 (0.810)	3 (0.090)	3/248	5.0	9.8%	coding (29/108 nt)	USA300HOU_1070	hypothetical protein
	?	CP000730	= 1144528	29 (0.900)					coding (43/108 nt)	USA300HOU_1070	hypothetical protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

AAGTAAAAATGAAGATGAAAGTAGCCCGATTATAAATAACAAAGTAATTACATATGATATAGGCTATAGTTACATGAAATAATTGAATTTAAAGAGGTTGCAGTACTTGTTATGACAATTGGTATTGTTAGCTTTTGTAACGACCAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP000730/1144368‑1144514 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aacgaccatCATCGGTATCATGTATGGTCGTTACAAAAGCTAACAATACCAATTGTCATAACAAGTACTGCAACCTCTTTAAATTCAATTATTTCATGTAACTATAGCCTATATCATATGTAATTACTTTGTTATTTATAATCGGGC  <  CP000730/1144528‑1144391                                                                                                                                                                                                                                                                                               AAGTAAAAATGAAGATGAAAGTAGCCCGATTATCAATAACAAAGTAATTACATATGATATAGGCTATAGCTACATGAAATAATTGAATTTAAAGAGGTTGCAGTACTTGTTATGACAATTGGTATTGTTAGCTTTTGTAAC                                                                                                                                                  >  2:380298/1‑141                                            GTAATTACATATGATATAGGCTATAGTTACATGAAATAATTGAATTTAAAGAGGTTGCAGTACTTGTTATGACAATTGGTATTGTTAGCTTTTGTAACGACCATCATCGGTATCATGTATGGTCGTTACAAAAGCTAACAA                                                                                                       <  1:249403/141‑1                                                                                                 GTTGCAGTACTTGTTATGACAATTGGTATTGTTAGCTTTTGTAACGACCATCATCGGTATCATGTATGGTC                                                                                                                        <  2:48538/71‑1                                                                                                 GTTGCAGTACTTGTTATGACAATTGGTATTGTTAGCTTTTGTAACGACCATCATCGGTATCATGTATGGTC                                                                                                                        >  1:48538/1‑71                                                                                                                                            ACGACCATCATCGGTATCATGTATGGTCGTTACAAAAGCTAACAATACCAATTGTCATAACAAGTACTGCAACCTCTTTAAATTCAATTATTTCATGTAACTATAGCCTATATCATATGTAATTACTTTGTTATTTATAAT       >  1:367978/1‑141                                                                                                                                               ACCATCATCGGTATCATGTATGGTCGTTACAAAAGCTAACAATACCAATTGTCATAACAAGTACTGCAACCTCTTTAAATTCAATTATTTCATGTAACTATAGCCTATATCATATGTAATTACTTTGTTATTTATAATCGG    >  1:245281/1‑141                                                                                                                                                 CATCATCGGTATCATGTATGGTCGTTACAAAAGCTAACAATACCAATTGTCATAACAAGTACTGCAACCTCTTTAAATTCAATTATTTCATGTAACTATAGCCTATATCATATGTAATTACTTTGTTATTTATAATCGGGC  >  2:420895/1‑141                                                                                                                                                                                                                                                                                               AAGTAAAAATGAAGATGAAAGTAGCCCGATTATAAATAACAAAGTAATTACATATGATATAGGCTATAGTTACATGAAATAATTGAATTTAAAGAGGTTGCAGTACTTGTTATGACAATTGGTATTGTTAGCTTTTGTAACGACCAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP000730/1144368‑1144514 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aacgaccatCATCGGTATCATGTATGGTCGTTACAAAAGCTAACAATACCAATTGTCATAACAAGTACTGCAACCTCTTTAAATTCAATTATTTCATGTAACTATAGCCTATATCATATGTAATTACTTTGTTATTTATAATCGGGC  <  CP000730/1144528‑1144391

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.