New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	= 2431654	42 (1.220)	7 (0.230) +CTATGGAGTCGATGGGGT	5/230	3.8	18.4%	intergenic (+1/+646)	USA300HOU_2294/USA300HOU_2296	transcriptional regulator/hypothetical membrane protein
	?	CP000730	2432295 =	30 (0.870)					intergenic (+642/+5)	USA300HOU_2294/USA300HOU_2296	transcriptional regulator/hypothetical membrane protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

ACTGCCGAACTCGAAATTGAAAATATTATAGATATTTCGTATTCATTCGGTAAGACGATTCAAACCAGAGACATATCCATTGATAACTATCATCAATTTTTAAACCCCATCGATTCCTAAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP000730/2431534‑2431654 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTTATCTACGCATAAATACTTATTACTGATATAACGAAAGAAACAAAATTATTTGCTATATGTAATGCAATTGTTGAACCTAG  >  CP000730/2432295‑2432377                                                                                                                          ||||||||||||||||||                                                                                    ACTGCCGAACTCGAAATTGAAAATATTATAGATATTTCGTATTCATTCGGTAAGACGATTCAAACCAGAGACATATCCATTGATAACTATCATCAATTTTTAAACCCCATCGATTCCTAAACTATGGAGTCGATGGGGTTT                                                                                   >  2:206024/1‑141                                                   TAAGACGATTCAAACCAGAGACATATCCATTGATAACTATCATCAATTTTTAAACCCCATCGATTCCTAAACTATGGAGTCGATGGGGTTTTATCTACGCATAAATACTTATTACTGATATAACGAAAGAAACAAAATTAT                                 >  1:109171/1‑141                                                                                  GATAACTATCATCAATTTTTAAACCCCATCGATTCCTAAACTATGGAGTCGATGGGGTTTTATCTACGCATAAATACTTATTACTGATATAACGAAAGAAACAAAATTATTTGCTATATGTAATGCAATTGTTGAACCTAG  >  1:383416/1‑141                                                                                                ATTTTTAAACCCCATCGATTCCTAAACTATGGAGTCGATGGGGTTTTATCTACGCATAAATACTTATTACTGATATAA                                                   >  1:285699/1‑78                                                                                                ATTTTTAAACCCCATCGATTCCTAAACTATGGAGTCGATGGGGTTTTATCTACGCATAAATACTTATTACTGATATAA                                                   >  1:285695/1‑78                                                                                                ATTTTTAAACCCCATCGATTCCTAAACTATGGAGTCGATGGGGTTTTATCTACGCATAAATACTTATTACTGATATAA                                                   <  2:285695/78‑1                                                                                                ATTTTTAAACCCCATCGATTCCTAAACTATGGAGTCGATGGGGTTTTATCTACGCATAAATACTTATTACTGATATAA                                                   <  2:285699/78‑1                                                                                                                          ||||||||||||||||||                                                                                    ACTGCCGAACTCGAAATTGAAAATATTATAGATATTTCGTATTCATTCGGTAAGACGATTCAAACCAGAGACATATCCATTGATAACTATCATCAATTTTTAAACCCCATCGATTCCTAAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP000730/2431534‑2431654 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTTATCTACGCATAAATACTTATTACTGATATAACGAAAGAAACAAAATTATTTGCTATATGTAATGCAATTGTTGAACCTAG  >  CP000730/2432295‑2432377

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.