New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	= 536990	37 (1.070)	5 (0.150)	5/262	4.3	12.0%	intergenic (+183/‑128)	rplY/pth	ribosomal protein L25/aminoacyl‑tRNA hydrolase
	?	CP000730	= 1995778	37 (1.090)					intergenic (+31/+62)	USA300HOU_1855/USA300HOU_t0025	IS1181 transposase/tRNA‑Leu
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

CACTGTGCTTATTTTAATATAAGCATGGTGCTTTTTGTGTTATTATAAAGCTTAATTAAACTTTATTACTTTGTACTAAAGTTTAATTAATTTTAGTGAGTAAAAGACATTAAACTCAACAATGATACATCATAAAAATTTTAATGTACTCGATTTTAAAATACATACTTACTAAGCTAAAGAATAATGATAATTGATGGCAATGGCGGAAAATGGATGTTGTCATTATAATAATAAATGAAACAATTATGTTGGAGGTAAACACGCATGAAATGTAT  >  CP000730/536851‑537128                                                                                                                                            |                                                                                                                                           cACTGTGCTTATTTTAATATAAGCATGGTGCTTTTTGTGTTATTATAAAGCTTAATTAAACTTTATTACTTTGTACTAAAGATTAATTAATTTTAGTGAGTAAAAGACATTAAACTCAACAATGATACATCATAAAAAttt                                                                                                                                           >  2:61708/1‑141 (MQ=255)     gtgCTTATTTTAATATAAGCATGGTGCTTTTTGTGTTATTATAAAGCTTAATTAAACTTTATTACTTTGTACTAAAGTTTAATTAATTTTAGTGAGTAAAAGACATTAAACTCAACAATGATACATCATAAAAATTTTAAt                                                                                                                                       >  1:242989/1‑141 (MQ=255)         ttATTTTAATATAAGCATGGTGCTTTTTGTGTTATTATAAAGCTTAATTAAACTTTATTACTTTGTACTAAAGTTTAATTAATTTTAGTGAGTAAAAGACATTAAACTCAACAATGATACATCATAAAAATTTTAATGTAc                                                                                                                                   >  1:172210/1‑141 (MQ=255)            ttttAATATAAGCATGGTGCTTTTTGTGTTATTATAAAGCTTAATTAAACTTTATTACTTTGTACTAAAGTTTAATTAATTTTAGTGAGTAAAAGACATTAAACTCAACAATGATACATCATAAAAATTTTAATGTACTCg                                                                                                                                <  1:353902/141‑1 (MQ=255)              tcactacaagctaggTGCCTTTTGTGTAATTATAAAGCTTAATAAAACTTTATTACTTAGGACTAAAGTTTAATAAAATATAGTGAATAACAGACATTAAACTCAACAATAATACATCATAAAAATTTTAATGTCCTCGAt                                                                                                                              <  2:381075/128‑1 (MQ=255)               tAATATAAGCATGGTGCTTTTTGTGTTATTATAAAGCTTAATTAAACTTTATTACTTTGTACTAAAGTTTAATTAATTTTAGTGAGTAAAAGACATTAAACTCAACAATGATACATCATAAAAATTTTAATGTACTCGAtt                                                                                                                             >  1:55163/1‑141 (MQ=255)                 atatAAGCATGGTGCTTTTTGTGTTATTATAAAGCTTAATTAAACTTTATTACTTTGTACTAAAGTTTAATTAATTTTAGTGAGTAAAAGACATTAAACTCAACAATGATACATCATAAAAATTTTAATGTACTCGAtttt                                                                                                                           >  1:276372/1‑141 (MQ=255)                   ataAGCATGGTGCTTTTTGTGTTATTATAAAGCTTAATTAAACTTTATTACTTTGTACTAAAGTTTAATTAATTTTAGTGAGTAAAAGACATTAAACTCAACAATGATACATCATAAAAATTTTAATGTACTCGATTTTaa                                                                                                                         <  1:437334/141‑1 (MQ=255)                       gCATGGTGCTTTTTGTGTTATTATAAAGCTTAATTAAACTTTATTACTTTGTACTAAAGTTTAATTAATTTTAGTGAGTAAAAGACATTAAACTCAACAATGATACATCATAAAAATTTTAATGTACTCGATTTTAAAata                                                                                                                     <  2:246060/141‑1 (MQ=255)                                tttttGTGTTATTATAAAGCTTAATTAAACTTTATTACTTTGTACTAAAGTTTAATTAATTTTAGTGAGTAAAAGACATTAAACTCAACAATGATACATCATAAAAATTTTAATGTACTCGATTTTAAAATACAtacttac                                                                                                            >  1:184611/1‑141 (MQ=255)                                tttttGTGTTATTATAAAGCTTAATTAAACTTTATTACTTTGTACTAAAGTTTAATTAATTTTAGTGAGTAAAAGACATTAAACTCAACAATGATACATCATAAAAATTTTAATGTACTCGATTTTAAAATACAtacttac                                                                                                            <  2:55163/141‑1 (MQ=255)                                            tataAAGCTTAATTAAACTTTATTACTTTGTACTAAAGTTTAATTAATTTTAGTGAGTAAAAGACATTAAACTCAACAATGATACATCATAAAAATTTTAATGTACTCGATTTTAAAATACATACTTACTAAGCTAAAGaa                                                                                                <  1:87028/141‑1 (MQ=255)                                                 aGCTTAATTAAACTTTATTACTTTGTACTAAAGTTTAATTAATTTTAGTGAGTAAAAGACATTAAACTCAACAATGATACATCATAAAAATTTTAATGTACTCGATTTTAAAATACATACTTACTAAGCTAAAGAATAATg                                                                                           <  2:3346/141‑1 (MQ=255)                                                        ttaaACTTTAGTACAAAGTAATAAAGTTTAATTAATTTTAGTGAGTAAAAGACATTAAACTCAACAATGATACATCATAAAAATTTTAATGTACTCGATTTTAAAATACATACTTACTAAGCTAAAGAATAATGATAATTg                                                                                    >  2:433870/1‑141 (MQ=39)                                                          aaaCTTTATTACTTTGTACTAAAGTTTAATTAATTTTAGTGAGTAAAAGACATTAAACTCAACAATGATACATCATAAAAATTTTAATGTACTCGATTTTAAAATACATACTTACTAAGCTAAAGAATAATGATAATTGAt                                                                                  <  2:311856/141‑1 (MQ=255)                                                           aaCTTTATTACTTTGTACTAAAGTTTAATTAATTTTAGTGAGTAAAAGACATTAAACTCAACAATGATACATCATAAAAATTTTAATGTACTCGATTTTAAAATACATACTTACTAAGCTAAAGAATAATGATAATTGATg                                                                                 <  2:424627/141‑1 (MQ=255)                                                                    aCTTTGTACTAAAGTTTAATTAATTTTAGTGAGTAAAAGACATTAAACTCAACAATGATACATCATAAAAATTTTAATGTACTCGATTTTAAAATACATACTTACTAAGCTAAAGAATAATGATAATTGATGGCAATGGCg                                                                        >  1:140606/1‑141 (MQ=255)                                                                    aCTTTGTACTAAAGTTTAATTAATTTTAGTGAGTAAAAGACATTAAACTCAACAATGATACATCATAAAAATTTTAATGTACTCGATTTTAAAATACATACTTACTAAGCTAAAGAATAATGATAATTGATGGCAATGGCg                                                                        <  1:35692/141‑1 (MQ=255)                                                                           aCTAAAGTTTAATTAATTTTAGTGAGTAAAAGACATTAAACTCAACAATGATACATCATAAAAATTTTAATGTACTCGATTTTAAAATACATACTTACTAAGCTAAAGAATAATGATAATTGATGGCAATGGCGGAAAATg                                                                 >  2:133396/1‑141 (MQ=255)                                                                                      attaattTTAGTGAGTAAAAGACATTAAACTCAACAATGATACATCATAAAACTTTTAATGTACTCGATTTTAAAATACATACTTACTAAGCTAAAGAATAATGATAATTGATGGCAATGGCGGAAAATGGATGTTGTCAt                                                      >  2:34810/1‑141 (MQ=255)                                                                                          attTTAGTGAGTAAAAGACATTAACCGCAACAATTATACATCAGAAAAATGTTAATGTACTCGATTTTAAAATACATACTTACTAAGCTAAAGAATAATGATAATTGATGGCAATGGCGGAAAATGGATGTTGTCATtata                                                  <  1:148955/141‑1 (MQ=255)                                                                                           ttttAGTGAGTAAAAGACATTAAACTCAACAATGATACATCATAAAAATTTTAATGTACTCGATTTTAAAATACATACTTACTAAGCTAAAGAATAATGATAATTGATGGCAATGGCGGAAAATGGATGTTGTCATTataa                                                 >  2:130530/1‑141 (MQ=255)                                                                                              taatGATTAAAATACATTAATCTCAACAATGATACAACATTAAAATTTTAATGTACTCGATTTTAAAATACATACTTACTAAGCTAAAGAATAATGATAATTGATGGCAATGGCGGAAAATGGATGTTGTCATTataataa                                              <  1:412634/138‑1 (MQ=255)                                                                                                    gTAAAAGACATTAAACTCAACAATGATACATCATAAAAATTTTAATGTACTCGATTTTAAAATACATACTTACTAAGCTAAAGAATAATGATAATTGATGGCAATGGCGGAAAATGGATGTTGTCATTATAATAATAAATg                                        <  1:178295/141‑1 (MQ=255)                                                                                                         aGACATTAAACTCAACAATGATACATCATAAAAATTTTAATGTACTCGATTTTAAAATACATACTTACTAAGCTAAAGAATAATGATAATTGATGGCAATGGCGGAAAATGGATGTTGTCATTATAATAATAAATGAAACa                                   >  1:220417/1‑141 (MQ=255)                                                                                                           aCATTAAACTCAACAATGATACATCATAAAAATTTTAATGTACTCGATTTTAAAATACATACTTACTAAGCTAAAGAATAATGATAATTGATGGCAATGGCGGAAAATGGATGTTGTCATTATAATAATAAATGAAACAAt                                 <  2:191043/141‑1 (MQ=255)                                                                                                           aCATTAAACTCAACAATGATACATCATAAAAATTTTAATGTACTCGATTTTAAAATACATACTTACTAAGCTAAAGAATAATGATAATTGATGGCAATGGCGGAAAATGGATGTTGTCATTATAATAATAAATGAAACAAt                                 >  2:232843/1‑141 (MQ=255)                                                                                                                      aacaaTGATACATCATAAAAATTTTAATGTACTCGATTTTAAAatacata                                                                                                                 >  1:411605/1‑50 (MQ=255)                                                                                                                      aacaaTGATACATCATAAAAATTTTAATGTACTCGATTTTAAAatacata                                                                                                                 <  2:411605/50‑1 (MQ=255)                                                                                                                          aTGATACATCATAAAAATTTTAATGTACTCGATTTTAAAATACATACTTACTAAGCTAAAGAATAATGATAATTGATGGCAATGGCGGAAAATGGATGTTGTCATTATAATAATAAATGAAACAATTATGTTGGAGGTaaa                  <  2:220417/141‑1 (MQ=255)                                                                                                                           tGATACATCATAAAAATTTTAATGTACTCGATTTTAAAATACATACTTACTAAGCTAAAGAATAATGATAATTGATGGCAATGGCGGAAAATGGATGTTGTCATTATAATAATAAATGAAACAATTATGTTGGAGGTAAac                 >  2:129024/1‑141 (MQ=255)                                                                                                                            gATACATCATAAAAATTTTAATGTACTCGATTTTAAAATACATACTTACTAAGCTAAAGAATAATGATAATTGATGGCAATGGCGGAAAATGGATGTTGTCATTATAATAATAAATGAAACAATTATGTTGGAGGTAAaca                <  2:105638/141‑1 (MQ=255)                                                                                                                             aTACATCATAAAAATTTTAATGTACTCGATTTTAAAATACATACTTACTAAGCTAAAGAATAATGATAATTGATGGCAATGGCGGAAAATGGATGTTGTCATTATAATAATAAATGAAACAATTATGTTGGAGGTAAacac               <  1:299192/141‑1 (MQ=255)                                                                                                                                catcatAAAAATTTTAATGTACTCGATTTTAAAATACATACTTACTAAGCTAAAGAATAATGATAATTGATGGCAATGGCGGAAAATGGATGTTGTCATTATAATAATAAATGAAACAATTATGTTGGAGGTAAACACGCa            >  1:207555/1‑141 (MQ=255)                                                                                                                                  tcatAAAAATTTTAATGTACTCGATTTTAAAATACATACTTACTAAGCTAAAGAATAATGATAATTGATGGCAATGGCGGAAAATGGATGTTGTCATTATAATAATAAATGAAACAATTATGTTGGAGGTAAACACGCAta          >  2:161932/1‑140 (MQ=255)                                                                                                                                  tcatAAAAATTTTAATGCACTTGATTTTAAAATACATACTTACTAAGCTAAAGAATAATGATAATTGATGGCAATGGCGGAAAATGGATGTTGTCATTATAATAATAAATGAAACAATTATGTTGGAGGTAAACACGCATg          <  1:223133/141‑1 (MQ=255)                                                                                                                                          aTTTTAATGTACTCGATTTTAAAATACATACTTACTAAGCTAAAGAATAATGATAATTGATGGCAATGGCGGAAAATGGATGTTGTCATTATAATAATAAATGAAACAATTATGTTGGAGGTAAACACGCATGAAATGTAt  >  2:131802/1‑141 (MQ=255)                                                                                                                                            |                                                                                                                                           CACTGTGCTTATTTTAATATAAGCATGGTGCTTTTTGTGTTATTATAAAGCTTAATTAAACTTTATTACTTTGTACTAAAGTTTAATTAATTTTAGTGAGTAAAAGACATTAAACTCAACAATGATACATCATAAAAATTTTAATGTACTCGATTTTAAAATACATACTTACTAAGCTAAAGAATAATGATAATTGATGGCAATGGCGGAAAATGGATGTTGTCATTATAATAATAAATGAAACAATTATGTTGGAGGTAAACACGCATGAAATGTAT  >  CP000730/536851‑537128

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.