New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	= 208036	27 (0.780)	5 (0.150)	5/252	4.1	15.2%	coding (4445/7194 nt)	USA300HOU_0192	non‑ribosomal peptide synthetase
	?	CP000730	= 208062	30 (0.920)					coding (4471/7194 nt)	USA300HOU_0192	non‑ribosomal peptide synthetase
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

CGGGAAATAAATCTATCATAAGTTACTTTAATGAAGTTGTCTCACGACAAGGTAATCATGTTGCGCTAGTCATGAATGATTTGACAATGACGTATGAAACATTACGCAACTATGTGGATGCCATTGCGCACATGCTCCTATCAAATGGTGTGGGCAATGGTCAACGGGTTGCCTTGTTTACAGAACGTAGTTTTGAAATGATTGCGGCGATGTTGGCGACAGTTAAAGTAGGTGCATCTTATATACCTATCGATATTGATTTTCCG  >  CP000730/207910‑208175                                                                                                                               |                                                                                                                                            cGGGAAATAAATCTATCATAAGTTACTTTAATGAAGTTGTCTCACGACAAGGTAATCATGTTGCGCTAGTCATGAATGATTTGACAATGACGTATGAAACATTACGCAACTATGTGGATGCCATTGCGCACATGCTCCTAt                                                                                                                               >  1:225700/1‑141 (MQ=255)           atCTATCATAAGTTACTTTAATGAAGTTGTCTCACGACAAGGTAATCATGTTGCGCTAGTCATGAATGATTTGACAATGACGTATGAAACATTACGCAACTATGTGGATGCCATTGCGCACATGCTCCTATCAAATGgtgt                                                                                                                     >  2:156001/1‑141 (MQ=255)                          cTTTAATGAAGTTGTCTCACGACAAGGTAATCATGTTGCGCTAGTCATGAATGATTTGACAATGACGTATGAAACATTACGCAACTATGTGGATGCCATTGCGCACATGCTCCTATCAAATGGTGTGGGCAATGGTCAACg                                                                                                      <  2:157279/141‑1 (MQ=255)                               aTGAAGTTGTCTCACTACAAGGTAATCATGTTGCGCTAGTCATGAATGATTTGACAATGACGTATGAAACATTACGCAACTATGTGGATGCCATTGCGCACATGCTCCTATCAAATGGTGTGGGCAATGGTCAACGGGTTg                                                                                                 >  1:313406/1‑141 (MQ=255)                                    gTTGTCTCACGACAAGGTAATCATGTTGCGCTAGTCATGAATGATTTGACAATGACGTATGAAACATTACGCAACTATGTGGATGCCATTGCGCACATGCTCCTATCAAATGGTGTGGGCAATGGTCAACGGGTTGCCTTg                                                                                            >  2:101431/1‑141 (MQ=255)                                    gTTGTCTCACGACAAGGTAATCATGTTGCGCTAGTCATGAATGATTTGACAATGACGTATGAAACATTACGCAACTATGTGGATGCCATTGCGCACATGCTCCTATCAAATGGTGTGGGCAATGGTCAACGGGTTGCCTTg                                                                                            >  1:14443/1‑141 (MQ=255)                                     ttgtcgtgagACAAGGTAATCATGTTGCGCTAGTCATGAATGATTTGACAATGACGTATGAAACATTACGCAACTATGTGGATGCCATTGCGCACATGCTCCTATCAAATGGTGTGGGCAATGGTCAACGGGTTGCCTTGt                                                                                           >  1:64511/10‑141 (MQ=255)                                     ttGTCTCACGACAAGGTAATCATGTTGCGCTAGTCATGAATGATTTGACAATGACGTATGAAACATTACGCAACTATGTGGATGCCATTGCGCACATGCTCCTATCAAATGGTGTGGGCAATGGTCAACGGGTTGCCTTGt                                                                                           <  1:351564/141‑1 (MQ=255)                                             cGACAAGGTAATCATGTTGCGCTAGTCATGAATGATTTGACAATGACGTATGAAACATTACGCAACTATGTGGATGCCATTGCGCACATGCTCCTATCAAATGGTGTGGGCAATGGTCAACGGGTTGCCTTGTTTACAGaa                                                                                   >  2:266219/1‑141 (MQ=255)                                                 aaGGTAGTCATGTTTCGCTAGTCATGAATGATTTTATACTGACGTATGAAACATTACGTAGCTATGTGGATGCCATTGCGCACAGGCTCCTACCAAATACTGTGGGTAATCGGCAACGGGTCTCCTTGTTTACAGAACGTa                                                                               <  2:209578/141‑1 (MQ=255)                                                 aaGGTAATCATGTTGCGCTAGTCATGAATGATTTGACAATGACGTATGAAACATTACGCAACTATGTGGATGCCATTGCGCACATGCTCCTATCAAATGGTGTGGGCAATGGTCAACGGGTTGCCTTGTTTACAGAACGTa                                                                               <  2:27826/141‑1 (MQ=255)                                                    gTAATCATGTTGCGCTAGTCATGAATGATTTGACAATGACGTATGAAACATTACGCAACTATGTGGATGCCATTGCGCACATGCTCCTATCAAATGGTGTGGGCAATGGTCAACGGGTTGCCTTGTTTACAGAACGTAGtt                                                                            >  1:180978/1‑141 (MQ=255)                                                       aTCATGTTGCGCTAGTCATGAATGATTTGACAATGACGTATGAAACATTACGCAACTATGTGGATGCCATTGCGCACATGCTCCTATCAAATGGTGTGGGCAATGGTCAACGGGTTGCCTTGTTTACAGAACGTAGTTTTg                                                                         <  2:14443/141‑1 (MQ=255)                                                            gTTGCGCTAGTCATGAATGATTTGACAATGACGTATGAAACATTACGCAACGATGTGGATGCGATTGCGCCAATGCTCCTATAACATGGTGCGGGCCATGGCCAACGGGTTGCCTTGCTTACAGAACGTAGtaatgcaagg                                                                    >  2:388800/1‑132 (MQ=255)                                                             ttGCGCTAGTCATGAATGATTTGACAATGACGTATGAAACATTACGCAACTATGTGGATGCCATTGCGCACATGCTCCTATCAAATGGTGTGGGCAATGGTCAACGGGTTGCCTTGTTTACAGAACGTAGTTTTGAAATGa                                                                   <  2:64511/141‑1 (MQ=255)                                                                      tCATGAATGATTTGACAATGACGTATGAAACATTACGCAACTATGTGGATGCCATTGCGCACATGCTCCTATCCAATGGTGTGGGCAATGGTCAACGGGTTGCCTTGTTTACAGAACGTAGTTTTGAAATGATTGCGGCGa                                                          <  1:131099/141‑1 (MQ=255)                                                                          gaatgaTTTGACAATGACGTATGAAACATTACGCAACTATGTGGATGCCATTGCGCACATGCTCCTATCAAATGGTGTGGGCAATGGTCAACGGGTTGCCTTGTTTAAAGAACGGAGTTTTGATATGATTTCGGCGATGtt                                                      >  1:124863/1‑141 (MQ=255)                                                                                      aaTGACGTATGAAACATTACGCAACTATGTGGATGCCATTGCGCACATGCTCCTATCAAATGGTGTGGGCAATGGTCAACGGGTTGCCTTGTTTACAGAACGTAGTTTTGAAATGATTGCGGCGATGTTGGCGACAGTTaa                                          <  2:408746/141‑1 (MQ=255)                                                                                            gTATGAAACATTACGCAACTATGTGGATGCCATTGCGCACATGCTCCTATCAAATGGTGTGGGCAATGGTCAACGGGTTGCCTTGTTTACAGAACGTAGTTTTGAAATGATTGCGGCGATGTTGGCGACAGTTAAAGTAgg                                    >  1:315473/1‑141 (MQ=255)                                                                                               tGAAACATTACGCAACTATGTGGATGCCATTGCGCACATGCTCCTATCAAATGGTGTGGGCAATGGTCAACGGGTTGCCTTGTTTACAGAACGTAGTTTTGAAATGATTGCGGCGATGTTGGCGACAGTTAAAgatgcatg                                 >  1:360360/1‑134 (MQ=255)                                                                                                                 tgtgGATGCCATTGCGCACATGCTCCTATCAAATGGTGTGGGCAATGGTCAACGGGTTGCCTTGTTTACAGAACGTAGTTTTGAAATGATTGCGGCGATGTTGGCGACAGTTAAAGTAGGTGCATCTTATATACCTATCGa               <  2:428160/141‑1 (MQ=255)                                                                                                                    ggATGCCATTGCGCACATGCTCCTATCAAATGGTGTGGGCAATGGTCAACGGGTTGCCTTGTTTACAGAACGTAGTTTTGAAATGATTGCGGCGATGTTGGCGACAGTTAAAGTAGGTGCATCTTATATACCTATCGatat            <  2:53881/141‑1 (MQ=255)                                                                                                                              gcgcACATGCTCCTATCAAATGGTGTGGGCAATGGTCAACGGGTTGCCTTGTTTACAGAACGTAGTTTTGAAATGATTGCGGCGATGTTGGCGACAGTTAAAGTAGGTGCATCTTATATACCTATCGATATTGATTTTCCg  <  2:118212/141‑1 (MQ=255)                                                                                                                              gcgcACATGCTCCTATCAAATGGTGTGGGCAATGGTCAACGGGTTGCCTTGTTTACAGAACGTAGTTTTGAAATGATTGCGGCGATGTTGGCGACAGTTAAAGTAGGTGCATCTTATATACCTATCGATATTGATTTTCCg  >  1:429841/1‑141 (MQ=255)                                                                                                                              gcgcACATGCTCCTATCAAATGGTGTGGGCAATGGTCAACGGGTTGCCTTGTTTACAGAACGTAGTTTTGAAATGATTGCGGCGATGTTGGCGACAGTTAAAGTAGGTGCATCTTATATACCTATCGATATTGATTTTCCg  >  1:84363/1‑141 (MQ=255)                                                                                                                               cgcACATGCTCCTATCAAATGGTGTGGGCAATGGTCAACGGGTTGCCTTGTTTACAGAACGTAGTTTTGaaa                                                                      <  2:245495/72‑1 (MQ=255)                                                                                                                               cgcACATGCTCCTATCAAATGGTGTGGGCAATGGTCAACGGGTTGCCTTGTTTACAGAACGTAGTTTTGaaa                                                                      >  1:245495/1‑72 (MQ=255)                                                                                                                               |                                                                                                                                            CGGGAAATAAATCTATCATAAGTTACTTTAATGAAGTTGTCTCACGACAAGGTAATCATGTTGCGCTAGTCATGAATGATTTGACAATGACGTATGAAACATTACGCAACTATGTGGATGCCATTGCGCACATGCTCCTATCAAATGGTGTGGGCAATGGTCAACGGGTTGCCTTGTTTACAGAACGTAGTTTTGAAATGATTGCGGCGATGTTGGCGACAGTTAAAGTAGGTGCATCTTATATACCTATCGATATTGATTTTCCG  >  CP000730/207910‑208175

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.