New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP000730 2067929 =70 (0.880)3 (0.040) 3/248 12.5 4.2% intergenic (+42/+153) ppaC/USA300HOU_1922 inorganic diphosphatase/hypothetical protein
?CP000730 2067974 = 71 (0.970)intergenic (+87/+108) ppaC/USA300HOU_1922 inorganic diphosphatase/hypothetical protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

ACAAAAGGGGAATTGTATAGAAATCACTAATCTGTGGGTTAGGGTAGCTAAAGGAATAAAAACTACTATTGAAAAAGGGTTGTAAATTAGTCAAACGTAAATAAAAAACAGTTCATTGAAAGTGAAATAAATTCTACTTTAATGAACTGTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP000730/2068079‑2067929
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aatgaactgttTTTTATTTACGTTTGACTAATTTACAACCCTTTTTCAATAGTAGTTTTTATTCCTTTAGCTACCCTAACCCACAGATTAGTGATTTCTATACAATTCCCCTTTTGTCTTTACATTTTCTTAAAATATTTGCGATGTT  >  CP000730/2067974‑2068110
                                                                                                                                                                                                                                                                                                
ACAAAAGGGGAATTGTATAGAAATCACTAATCTGTGGGTTAGGGTAGCTAAAGGAATAAAAACTACTATTGAAAAAGGGTTGTAAATTAGTCAAACGTAAATAAAAAACAGTTCATTGAAAGTGAAATAAATTCTACTTTA                                                                                                                                                     <  2:79815/141‑1
     AGGGGAATTGTATAGAAATCACTAATCTGTGGGTTATGGTAGCTAAAGGAATAAAAACTACTATTGAAAAAGGGTTGTAAATTAGTCAAACGTAAATAAAAAACAGTTCATTGAAAGTGAAATAAATTCTACTTTA                                                                                                                                                     <  1:694414/136‑1
     AGGGGAATTGTATAGAAATCACTAATCTGTGGGTTATGGTAGCTAAAGGAATAAAAACTACTATTGAAAAAGGGTTGTAAATTAGTCAAACGTAAATAAAAAACAGTTCATTGAAAGTGAAATAAATTCTACTTTA                                                                                                                                                     >  2:694414/1‑136
       ggaAATTGTATAGAAATCAAAAATCTGTGGGTTAGGGTAGCTAAAGGAATAAAAAAAAAAAAAGAAAAAGGGTTGTAAATTAGTCAAACGTAAATAAAAAACAGTTCATTGAAAGTGAAATAAATTCTACTTTAATGAACT                                                                                                                                              <  2:3849/138‑1
        GGAATTGTATAGAAATCACTAATCTGTGGGTTAGGGTAGCTAAAGGAATAAAAACTACTATTGAAAAAGGGTTGTAAATTAGTCAAACGTAAATAAAAAACAGTTCATTGAAAGTGAAATAAATTCTACTTTAATGAACTG                                                                                                                                             <  2:739376/141‑1
        GGAATTGTATAGAAATCACTAATCTGTGGGTTAGGGTAGCTAAAGGAATAAAAACTACTATTGAAAAAGGGTTGTAAATTAGTCAAACGTAAATAAAAAACAGTTCATTGAAAGTGAAATAAATTCTACTTTAATGAACTG                                                                                                                                             <  2:268533/141‑1
        GGAATTGTATAGAAATCACTAATCTGTGGGTTAGGGTAGCTAAAGGAATAAAAACTACTATTGAAAAAGGGTTGTAAATTAGTCAAACGTAAATAAAAAACAGTTCATTGAAAGTGAAATAAATTCTACTTTAATGAACTG                                                                                                                                             <  2:739406/141‑1
                                                                                                          AACAGTTCATTGAAAGTGAAATAAATTCTACTTTAATGAACTGTTTTTTATTTACGTTTGACTAATTTACAACCCTTTTTCAATAGTAGTTTTTATTCCTTTAGCTACCCTAACCCACAGATTAGTGATTTCTATACAATT                                           >  1:634503/1‑141
                                                                                                              GTTCATTGAAAGTGAAATAAATTCTACTTTAATGAACTGTTTTTTATTTACGTTTGACTAATTTACAACCCTTTTTCAATAGTAGTTTTTATTCCTTTAGCTACCCTAACCCACAGATTAGTGATTTCTATACAATTCCCC                                       >  1:614354/1‑141
                                                                                                               TTCATTGAAAGTGAAATAAATTCTACTTTAATGAACTGTTTTTTATTTACGTTTGACTAATTTACAACCCTTTTTCAATAGTAGTTTTTATTCCTTTAGCTACCCTAACCCACAGATTAGTGATTTCTATACAATTCCCCT                                      >  1:371396/1‑141
                                                                                                                                            AATGAACTGTTTTTTATTTACGTTTGACTAATTTACAACCCTTTTTCAATAGTAGTTTTTATTCCTTTAGCTACCCTAACCCACAGATTAGTGATTTCTATACAATTCCCCTTTTGTCTTTACATTTTCTTAAAATATTTG         <  2:125174/141‑1
                                                                                                                                             ATGAACTGTTTTTTATTTACGTTTGACTAATTTACAACCCTTTTTCAATAGTAGTTTTTATTCCTTTAGCTACCCTAACCCACAGATTAGTGATTTCTATACAATTCCCCTTTTGTCTTTACATTTTCTTAAAATATTTGC        >  1:555430/1‑141
                                                                                                                                              TGAACTGTTTTTTATTTATTTTTTACTAATTTACAACCCTTTTTCAATAGTAGTTTTTATTCCTTTAGCTACCCTAACCCACAGATTAGTGATTTCTATACAATTCCCCTTTTGTCTTTACATTTTCTTAAAATATTTGCG       >  1:352032/1‑141
                                                                                                                                              TGAACTGTTTTTTATTTACGTTTGACTAATTTACAACCCTTTTTCAATAGTAGTTTTTATTCCTTTAGCTACCCTAACCCACAGATTAGTGATTTCTATACAATTCCCCTTTTGTCTTTACATTTTCTTAAAATATTTGCG       >  2:185130/1‑141
                                                                                                                                                AACTGTTTTTTATTTACGTTTGACTAATTTACAACCCTTTTTCAATAGTAGTTTTTATTCCTTTAGCTACCCTAACCCACAGATTAGTGATTTCTATACAATTCCCCTTTTGTCTTTACATTTTCTTAAAATATTTGCGAT     <  1:756273/141‑1
                                                                                                                                                 ACTGTTTTTTATTTACGTTTGACTAATTTACAACCCTTTTTTTTTTTTTTTTTTTATTCCTTTAGCTACCCTAACCCACAGATTAGTGATTTCTATACAATTCCCCTTTTGTCTTTACATTTTCTTAAAATATTTGCGATG    >  2:670544/1‑141
                                                                                                                                                 ACTGTTTTTTATTTACGTTTGACTAATTTACAACCCTTTTTCAATAGTAGTTTTTATTCCTTTATCTACCCTAACCCACAGATTAGTGATTTCTATACAATTCCCCTTTTGTCTTTACATTTTCTTAAAATATTTGCGATG    >  2:779431/1‑141
                                                                                                                                                  CTGTTTTTTATTTACGTTTGACTAATTTACAACCCTTTTTCAATAGTAGTTTTTATTCCTTTAGCTACCCTAACCCACAGATTAGTGATTTCTATACAATTCCCCTTTTGTCTTTACATTTTCTTAAAATATTTGCGATGT   <  1:70812/141‑1
                                                                                                                                                  CTGTTTTTTATTTACGTTTGACTAATTTACAACCCTTTTTCAATAGTAGTTTTTATTCCTTTAGCTACCCTAACCCACAGATTAGTGATTTCTATACAATTCCCCTTTTGTCTTTACATTTTCTTAAAATATTTGCGATGT   <  2:715379/141‑1
                                                                                                                                                   TGTTTTTTATTTACGTTTGACTAATTTACAACCCTTTTTTTTTTTTTTTTTTTATTCCTTTAGCTACCCTAACCCACAGATTAGTGATTTCTATACAATTCCCCTTTTGTCTTTACATTTTCTTAAAATATTTGCGATGTT  >  2:663016/1‑141
                                                                                                                                                   TGTTTTTTATTTACGTTTGACTAATTTACAACCCTTTTTCAATAGTAGTTTTTATTTCTTTAGCTACCCTAACCCACAGATTAGTGATTTCTATACAATTCCCCTTTTGTCTTTACATTTTCTTAAAATATTTGCGATGTT  >  1:532174/1‑141
                                                                                                                                                                                                                                                                                                
ACAAAAGGGGAATTGTATAGAAATCACTAATCTGTGGGTTAGGGTAGCTAAAGGAATAAAAACTACTATTGAAAAAGGGTTGTAAATTAGTCAAACGTAAATAAAAAACAGTTCATTGAAAGTGAAATAAATTCTACTTTAATGAACTGTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP000730/2068079‑2067929
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aatgaactgttTTTTATTTACGTTTGACTAATTTACAACCCTTTTTCAATAGTAGTTTTTATTCCTTTAGCTACCCTAACCCACAGATTAGTGATTTCTATACAATTCCCCTTTTGTCTTTACATTTTCTTAAAATATTTGCGATGTT  >  CP000730/2067974‑2068110

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.