| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP000730 | 1647574 = | 95 (1.200) | 5 (0.070) | 5/258 | 11.4 | 5.3% | intergenic (+4/+60) | USA300HOU_1533/lipM | hypothetical membrane protein/lipoate‑‑protein ligase A |
| ? | CP000730 | 1647624 = | 87 (1.150) | intergenic (+54/+10) | USA300HOU_1533/lipM | hypothetical membrane protein/lipoate‑‑protein ligase A | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
CACTTGAATTAACAGAAGCTCAATTGGCAGAAGTGGAAGAATTAACTGAAAAATATCGTTCAGATGAATGGATGTTTAGAAAGTAGTTTTTAGAATAAAAAATGGAAGCACGTAGACTATTTTACCTACAAGTGCTTCCGTTTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP000730/1647719‑1647574‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttttttATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATTTTTCAGTTAATTCTTCCACTTCTGCCAATTGAGCTTCTGTTAATTCAAGTGGCTTAAATTCTATATTTAAACCTTTCTTAAAACCTTTCTCGAA > CP000730/1647624‑1647762 CACTTGAATTAACAGAAGCTCAATTGGCAGAAGTGGAAGAATTAACTGAAAAATATCGTTCAGATGAATGGATGTTTAGAAAGTAGTTTTTAGAATAAAAAATGGAAGCACGTAGACTATTTTACCTACAAGTGCTTCCGT < 1:627575/141‑1 AAAATGGAAGCACGTAGACTATTTTACCTACAAGTGCTTCCGTTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATTTTTCAGTTAATTCTTCCACTTCTGCCAATTGAGCTTCTGTTAATTCAA > 2:396468/1‑141 ATGGAAGCACGTAGACTATTTTACCTACAAGTGCTTCCGTTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCTTCTGAACGATATTTTTCAGTTAATTCTTCCACTTCTGCCAATTGAGCTTCTGTTAATTCAAGTt > 2:48573/1‑140 TGGAAGCACGTAGACTATTTTACCTACAAGTGCTTCCGTTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATTTTTCAGTTAATTCTTCCACTTCTGCCAATTGAGCTTCTGTTAATTCAAGTGG > 1:712090/1‑141 GTAGACTATTTTACCTACAAGTGCTTCCGTTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATTTTTCAGTTAATTCTTCCACTTCTGCCAATTGAGCTTCTGTTAATTCAAGTGGCTTAAATTC < 2:712090/141‑1 TTCCGTTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATTTTTCAGTTAATTCTTCCACTTCTGCCAATTGAGCTTCTGTTAATTCAAGTGGCTTAAATTCTATATTTAAACCTTTCTTAAAACC < 1:396468/141‑1 TTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATTTTTCAGTTAATTCTTCCACTTCTGCCAATTGAGCTTCTGTTAATTCAAGTGGCTTAAATTCTATATTTAAACCTTTCTTAAAACCTTTCT < 2:272191/141‑1 TTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATTTTTCAGTTAATTCTTCCACTTCTGCCAATTGAGCTTCTGTTAATTCAAGTGGCTTAAATTCTATATTTAAACCTTTCTTAAAACCTTTCTC < 1:664783/141‑1 TTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATTTTTCAGTTAATTCTTCCACTTCTGCCAATTGAGCTTCTGTTAATTCAAGTGGCTTAAATTCTATATTTAAACCTTTCTTAAAACCTTTCTCG < 1:750062/141‑1 TTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATTTTTCAGTTAATTCTTCCACTTCTGCCAATTGAGCTTCTGTTAATTCAAGTGGCTTAAATTCTATATTTAAACCTTTCTTAAAACCTTTCTCGAA > 1:507237/1‑141 TTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATTTTTCAGTTAATTCTTCCACTTCTGCCAATTGAGCTTCTGTTAATTCAAGTGGCTTAAATTCTATATTTAAACCTTTCTTAAAACCTTTCTCGAA > 1:506026/1‑141 TTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATTTTTCAGTTAATTCTTCCACTTCTGCCAATTGAGCTTCTGTTAATTCAAGTGGCTTAAATTCTATATTTAAACCTTTCTTAAAACCTTTCTCGAA < 1:411552/141‑1 CACTTGAATTAACAGAAGCTCAATTGGCAGAAGTGGAAGAATTAACTGAAAAATATCGTTCAGATGAATGGATGTTTAGAAAGTAGTTTTTAGAATAAAAAATGGAAGCACGTAGACTATTTTACCTACAAGTGCTTCCGTTTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP000730/1647719‑1647574‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttttttATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATTTTTCAGTTAATTCTTCCACTTCTGCCAATTGAGCTTCTGTTAATTCAAGTGGCTTAAATTCTATATTTAAACCTTTCTTAAAACCTTTCTCGAA > CP000730/1647624‑1647762 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |