New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	1623534 =	34 (0.990)	3 (0.100)	3/248	5.1	8.7%	intergenic (+19/+64)	graE/malA	AraC family transcriptional regulator/alpha‑glucosidase
	?	CP000730	1623587 =	32 (1.020)					intergenic (+72/+11)	graE/malA	AraC family transcriptional regulator/alpha‑glucosidase
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TGAACGAAATGATTTATATGTTGAAGTGTACCCTCTCGATATTTCATTTAATGACCCATTCACTAAAATTCAGCTTTGGATTCCTGTTAAACAGAGTCCTTATGACGAAGATTAAATAATAAAAAACAAAGAAGCCCCCTAATATATCTATAGGTCTACAAATGGCCTTAGATTCTATTAGGGGGCATATTAATATGTTAATTTAGTTCGATAACACATGCTTCATATGGACGTAACTGTTTTAAATTAACTTTGGCATCATAATTAAATAGCT  >  CP000730/1623401‑1623674                                                                                                                                      |                                                                                                                                             tGAACGAAATGATTTATATGTTGAAGTGTACCCTCTCGATATTTCATTTAATGACCCATTCACTAAAATTCAGCTTTGGATTCCTGTTAAACAGAGTCCTTATGACGAAGATTAAATAATAAAAAACAAAGAAGCCCCCTa                                                                                                                                       >  1:374881/1‑141 (MQ=255)  gAACGAAATGATTTATATGTTGAAGTGTACCCTCTCGATATTTCATTTAATGACCCATTCACTAAAATTCAGCTTTGGATTCCTGTTAAACAGAGTCCTTATGACGAAGATTAAATAATAAAAAACAAAGAAGCCCCCTaa                                                                                                                                      <  1:346911/141‑1 (MQ=255)   aaCGAAATGATTTATATGTTGAAGTGTACCCTCTCGATATTTCATTTAATGACCCATTCACTAAAATTCAGCTTTGGATTCCTGTTAAACAGAGTCCTTATGACGAAGATTAAATAATAAAAAACAAAGAAGCCCCCTAat                                                                                                                                     <  2:312160/141‑1 (MQ=255)              ttATATGTTGAAGTGTACCCTCTCGATATTTCATTTAATGACCCATTCACTAAAATTCAGCTTTGGATTCCTGTTAAACAGAGTCCTTATGACGAAGATTAAATAATAAAAAACAAAGAAGCCCCCTAATATATCTATAgg                                                                                                                          <  1:176329/141‑1 (MQ=255)                 tatGTTGAAGTGTACCCTCTCGATATTTCATTTAATGACCCATTCACTAAAATTCAGCTTTGGATTCCTGTTAAACAGAGTCCTTATGACGAAGATTAAATAATAAAAAACAAAGAAGCCCCCTAATATATCTATAGGTCt                                                                                                                       <  1:167895/141‑1 (MQ=255)                    gTTGAAGTGTACCCTCTCGATATTTCATTTAATGACCCATTCACTAAAATTCAGCTTTGGATTCCTGTTAAACAGAGTCCTTATGACGAAGATTAAATAATAAAAAACAAAGAAGCCCCCTAATATATCTATAGGTCTACa                                                                                                                    <  2:160472/141‑1 (MQ=255)                         aGTGTACCCTCTCGATATTTCATTTAATGACCCATTCACTAAAATTCAGCTTTGGATTCCTGTTAAACATAGTCCTTATGACGAAGATTAAATAATAAAAAACAAAGAAGCCCCCTAATATATCTATAGGTCTACAAATgg                                                                                                               >  2:63669/1‑141 (MQ=255)                               cccTCTCGATATTTCATTTAATGACCCATTCACTAAAATTCAGCTTTGGATTCCTGTTAAACAGAGTCCTTATGACGAAGATTAAATAATAAAAAACAAAGAAGCCCCCTAATATATCTATAGGTCTACAAATGGCCTTAg                                                                                                         <  2:246165/141‑1 (MQ=255)                                ccTCTCGATATTTCATTTAATGACCCATTCACTAAAATTCAGCTTTGGATTCCTGTTAAACAGAGTCCTTATGACGAAGATTAAATAATAAAAAACAAAGAAGCCCCCTAATATATCTATAGGTCTACAAATGGCCTTAGa                                                                                                        >  2:30286/1‑141 (MQ=255)                                    tcGATATTTCATTTAATGACCCATTCACTAAAATTCAGCTTTGGATTCCTGTTAAACAGAGTCCTTATGACGAAGATTAAATAATAAAAAACAAAGAAGCCCCCTAATATATCTATAGGTCTACAAATGGCCTTAGATTCt                                                                                                    <  1:213558/141‑1 (MQ=255)                                       atatTTCATTTAATGACCCATTCACTAAAATTCAGCTTTGGATTCCTGTTAAACAGAGTCCTTATGACGAAGATTAAATAATAAAAAACAAAGAAGCCCCCTAATATATCTATAGGTCTACAAATGGCCTTAGATTCTAtt                                                                                                 <  1:68204/141‑1 (MQ=255)                                          tttCATTTAATGACCCATTCACTAAAATTCAGCTTTGGATTCCTGTTAAACAGAGTCCTTATGACGAAGATTAAATAATAAAAAACAAAGAAGCCCCCTAATATATCTATAGGTCTACAAATGGCCTTAGATTCTATTAgg                                                                                              >  2:206144/1‑141 (MQ=255)                                               tttAATGACCCATTCACTAAAATTCAGCTTTGGATTCCTGTTAAACAGAGTCCTTATGACGAAGATTAAATAATAAAAAACAAAGAAGCCCCCTAATATATCTATAGGTCTACAAATGGCCTTAGATTCTATTATGGGGCa                                                                                         <  2:229669/141‑1 (MQ=255)                                               tttAATGACCCATTCACTAAAATTCAGCTTTGGATTCCTGTTAAACAGAGTCCTTATGACGAAGATTAAATAATAAAAAACAAAGAAGCCCCCTAATATATCTATAGGTCTACAAATGGCCTTAGATTCTATTAGGGGGCa                                                                                         >  1:395356/1‑141 (MQ=255)                                               tttAATGACCCATTCACTAAAATTCAGCTTTGGATTCCTGTTAAACAGAGTCCTTATGACGAAGATTAAATAATAAAAAACAAAGAAGCCCCCTAATATATCTATAGGTCTACAAATGGCCTTAGATTCTATTAGGGGGCa                                                                                         >  1:395435/1‑141 (MQ=255)                                               tttAATGACCCATTCACTAAAATTCAGCTTTGGATTCCTGTTAAACAGAGTCCTTATGACGAAGATTAAATAATAAAAAACAAAGAAGCCCCCTAATATATCTATAGGTCTACAAATGGCCTTAGATTCTATTAGGGGGCa                                                                                         <  1:30286/141‑1 (MQ=255)                                                              aCTAAAATTCAGCTTTGGATTCCTGTTAAACAGAGTCCTTATGACGAAGATTAAATAATAAAAAACAAAGAAGCCCCCTAatat                                                                                                                                   <  2:312361/84‑1 (MQ=255)                                                              aCTAAAATTCAGCTTTGGATTCCTGTTAAACAGAGTCCTTATGACGAAGATTAAATAATAAAAAACAAAGAAGCCCCCTAatat                                                                                                                                   >  1:312361/1‑84 (MQ=255)                                                              aCTAAAATTCAGCTTTGGATTCCTGTTAAACAGAGTCCTTATGACGAAGATTAAATAATAAAAAACAAAGAAGCCCCCTAATATATCTATAGGTCTACAAATGGCCTTAGATTCTATTAGGGGGCATATTAATATGTTaag                                                                          <  1:198787/141‑2 (MQ=255)                                                                         gCTTTGGATTCCTGTTAAACAGAGTCCTTATGACGAAGATTAAATAATAAAAAACAAAGAAGCCCCCTAATATATCTATAGGTCTACAAATGGCCTTAGATTCTATTAGGGGGCATATTAATATGTTAATTTAGTTCGATa                                                               >  1:79628/1‑141 (MQ=255)                                                                             tGGATTCCTGTTAAACAGAGTCCTTATGACGAAGATTAAATAATAAAAAACAAAGAAGCCCCCTAATATATCTATAGGTCTACAAATGGCCTTAGATTCTATTAGGGGGCATATTAATATGTTAATTTAGTTCGATAacac                                                           >  1:300542/1‑141 (MQ=255)                                                                                 ttCCTGTTAAACAGAGTCCTTATGACGAAGATTAAATAATAAAAAACAAAGAAGCCCCCTAATATATCTATAGGTCTACAAATGGCCTTAGATTCTATTAGGGGGCATATTAATATGTTAATTTAGTTCGGTAACACATGc                                                       >  2:305828/1‑141 (MQ=255)                                                                                 ttCCTGTTAAACAGAGTCCTTATGACGAAGATTAAATAATAAAAAACAAAGAAGCCCCCTAATATATCTATAGGTCTACAAATGGCCTTAGATTCTATTAGGGGGCATATTAATATGTTAATTTAGTTCGATAACACATGc                                                       <  2:253292/141‑1 (MQ=255)                                                                                   ccTGTTAAACAGAGTCCTTATGACGAAGATTAAATAATAAAAAACAAAGAAGCCCCCTAATATATCTATAGGTCTACAAATGGCCTTAGATTCTATTAGGGGGCATATTAATATGTTAATTTAGTTCGATAACACATGCtt                                                     <  2:132448/141‑1 (MQ=255)                                                                                                   cTTATGACGAAGATTAAATAATAAAAAACAAAGAAGCCCCCTAATATATCTATAGGTCTACAAATGGCCTTAGATTCTATTAGGGGGCATATTAATATGTTAATTTAGTTCGATAACACATGCTTCATATGGACGTAACTg                                     >  2:267221/1‑141 (MQ=255)                                                                                                    ttATGACGAAGATTAAATAATAAAAAACAAAGAAGCCCCCTAATATATCTATAGGTCTACAAATGGCCTTAGATTCTATTAGGGGGCATATTAATATGTTAATTTAGTTCGATAACACATGCTTCATATGGACGTAACTGt                                    >  1:155268/1‑141 (MQ=255)                                                                                                             aGATTAAATAATAAAAAACAAAGAAGCCCCCTAATATATCTATAGGTCTACAAATGGCCTTAGATTCTATTAGGGGGCATATTAATATGTTAATTTAGTTCGATAACACATGCTTCATATGGACGTAACTGTTTTAAATTa                           >  1:223517/1‑141 (MQ=255)                                                                                                                    ataataAAAAACAAAGAAGCCCCCTAATATATCTATAGGTCTACAAATGGCCTTAGATTCTATTAGGGGGCATATTAATATGTTAATTTAGTTCGATAACACATGCTTCATATGGACGTAACTGTTTTAAATTAACTTTgg                    >  2:260461/1‑141 (MQ=255)                                                                                                                          aaaaaCAAAGAAGCCCCCTAATATATCTATAGGTCTACAAATGGCCTTAGATTCTATTAGGGGGCATATTAATATGTTAATTTAGTTCGATAACACATGCTTCATATGGACGTAACTGTTTTAAATTAACTTTGGcatcat              >  1:71434/1‑141 (MQ=255)                                                                                                                               cAAAGAAGCCCCCTAATATATCTATAGGTCTACAAATGGCCTTAGATTCTAtt                                                                                                 <  2:299237/53‑1 (MQ=255)                                                                                                                               cAAAGAAGCCCCCTAATATATCTATAGGTCTACAAATGGCCTTAGATTCTAtt                                                                                                 >  1:299237/1‑53 (MQ=255)                                                                                                                                 aagaagCCCCCTAATATATCTATAGGTCTACAAATGGCCTTAGATTCTATTAGGGGGCATATTAATATGTTAATTTAGTTCGATAACACATGCTTCATATGGACGTAACTGTTTTAAATTAACTTTGGCATCATAATTaaa       >  2:37095/1‑141 (MQ=255)                                                                                                                                     agCCCCCTAATATATCTATAGGTCTACAAATGGCCTTAGATTCTATTAGGGGGCATATTAATATGTTAATTTAGTTCGATAACACATGCTTCATATGGACGTAACTGTTTTAAATTAACTTTGGCATCATAATTAAATAGc   >  1:389672/1‑141 (MQ=255)                                                                                                                                     agCCCCCTAATATATCTATAGGTCTACAAATGGCCTTAGATTCTATTAGGGGGCATATTAATATGTTAATTTAGTTCGATAACACATGCTTCATATGGACGTAACTGTTTTAAATTAACTTTGGCATCATAATTAAATAGc   <  2:374881/141‑1 (MQ=255)                                                                                                                                      gCCCCCTAATATATCTATAGGTCTACAAATGGCCTTAGATTCTATTAGGGGGCATATTAATATGTTAATTTAGTTCGATAACACATGCTTCATATGGACGTAACTGTTTTAAATTAACTTTGGCATCATAATTAAATAGCt  >  1:55138/1‑141 (MQ=255)                                                                                                                                      gCCCCCTAATATATCTATAGGTCTACAAATGGCCTTAGATTCTATTAGGGGGCATATTAATATGTTAATTTAGTTCGATAACACATGCTTCATATGGACGTAACTGTTTTAAATTAACTTTGGCATCATAATTAAATAGCt  <  2:155268/141‑1 (MQ=255)                                                                                                                                      |                                                                                                                                             TGAACGAAATGATTTATATGTTGAAGTGTACCCTCTCGATATTTCATTTAATGACCCATTCACTAAAATTCAGCTTTGGATTCCTGTTAAACAGAGTCCTTATGACGAAGATTAAATAATAAAAAACAAAGAAGCCCCCTAATATATCTATAGGTCTACAAATGGCCTTAGATTCTATTAGGGGGCATATTAATATGTTAATTTAGTTCGATAACACATGCTTCATATGGACGTAACTGTTTTAAATTAACTTTGGCATCATAATTAAATAGCT  >  CP000730/1623401‑1623674

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.