| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| JC | CP000730 | 353,691 | Δ3 bp | 5.7% | intergenic (+127/‑24) | USA300HOU_0322 → / → USA300HOU_0323 | hypothetical protein/hypothetical membrane protein |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP000730 | 353694 = | 89 (1.000) | 5 (0.060) | 5/236 | NT | 5.7% | intergenic (+130/‑23) | USA300HOU_0322/USA300HOU_0323 | hypothetical protein/hypothetical membrane protein |
| ? | CP000730 | = 353690 | 85 (1.050) | intergenic (+126/‑27) | USA300HOU_0322/USA300HOU_0323 | hypothetical protein/hypothetical membrane protein | |||||
ACTGTTGTTGACACATCTGTAGTCATTACACCTGATGCTGCTAAAACCATCAATAGTAAACTAAATACCGTTGCTAAACCCTGAACAACAATTCCTATTATTGTCATTATTTTGATCGATTTTTCCATTGTCTTACTCCTTTATTATTATT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP000730/353844‑353694‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttattattattTACAAACTTGCGTTTGTGTTCTTATATATAAATGTTTAAATTTATATCGTGTTTATTTTAAAAATTATTGTCGCTAAAGCTCATTTACTTTTTGAAACTGGTTAAAAGTTTTAAAGAAAGCCTATGTTAATCTTTTT < CP000730/353690‑353554 ACTGTTGTTGACACATCTGTAGTCATTACACCTGATGCTGCTAAAACCATCAATAGTAAACTAAATACCGTTGCTAAACCCTGAACAACAATTCCTATTATTGTCATTATTTTGATCGATTTTTCCATTGTCTTACTCCTT < 2:936235/141‑1 TTGTTGACACATCTGTAGTCATTACACCTGATGCTGCTAAAACCATCAATAGTAAACTAAATACCGTTGCTAAACCCTGAACAACAATTCCTATTATTGTCATTATTTTGATCGATTTTTCCATTGTCTTACTCCTTTATT > 2:74403/1‑141 GTTGACACATCTGTAGTCATTACACCTGATGCTGCTAAAACCATCAATAGTAAACTAAATACCGTTGCTAAACCCTGAACAACAATTCCTATTATTGTCATTATTTTGATCGATTTTTCCATTGTCTTACTCCTTTATTAT < 1:937030/141‑1 GTTGACACATCTGTAGTCATTACACCTGATGCTGCTAAAACCATCAATAGTAAACTAAATACCGTTGCTAAACCCTGAACAACAATTCCTATTATTGTCATTATTTTGATCGATTTTTCCATTGTCTTACTCCTTTATTAT < 1:580879/141‑1 TTGACACATCTGTAGTCATTACACCTGATGCTGCTAAAACCATCAATAGTAAACTAAATACCGTTGCTAAACCCTGAACAACAATTCCTATTATTGTCATTATTTTGATCGATTTTTCCATTGTCTTACTCCTTTATTATT > 2:1062600/1‑141 TTGACACATCTGTAGTCATTACACCTGATGCTGCTAAAACCATCAATAGTAAACTAAATACCGTTGCTAAACCCTGAACAACAATTCCTATTATTGTCATTATTTTGATCGATTTTTCCATTGTCTTACTCCTTTATTATT < 1:161209/141‑1 GTTGCTAAACCCTGAATAACAATTCCTATTATTGTCATTATTTTGATCGATTTTTCCATTGACTTACTCCTTTATTATTATTTACAAACTTACGTTTGTGTTCTTATATATAAATGTTTAAATTTATATCGTGTTTATTTT < 2:365681/141‑1 AACCCTGAATAACAAGTCCTATTATTGTCATTATTTTGATCGATTTTTCCATTGACTTACTCCTTTATTATTATTTACAAACTTACGTTTGTGTTCTTATATATAAATGTTTAAATTTATATCGTGTTTATTTTAAAAATT < 1:903122/141‑1 TCGATTTTTCCATTGTCTTACTCCTTTATTATTATTTACAAACTTGCGTTTGTGTTCTTATATATAAATGTTTAAATTTATATCGTGTTTATTTTAAAAATTATTGTCGCTAAAGCTCATTTACTTTTTGAAACTGGTTAA < 1:450387/141‑1 CCATTGACTTACTCCTTTATTATTATTTACAAACTTACGTTTGTGTTCTTATATATAAATGTTTAAATTTATATCGTGTTTATTTTAAAAATTATTGTCGCTAAAGCTCATTTACTTTTTGAAACTGGTTAAAAGTTTTAA > 2:525842/1‑141 gaCTTACTCCTTTATTATTATTTACAAACTTACGTTTGTGTTCTTATATATAAATGTTTAAATTTATATCGTGTTTATTTTAAAAATTATTGTCGCTAAAGCTCATTTACTTTTTGAAACTGGTTAAAAGTTTTAAAGAAA < 2:126495/139‑1 TATTATTATTTACAAACTTGCGTTTGTGTTCTTATATATAAATGTTTAAATTTATATCGTGTTTATTTTAAAAATTATTGTCGCTAAAGCTCATTTACTTTTTGAAACTGGTTAAAAGTTTTAAAGAAAGCCTATGTTAAT < 2:68701/141‑1 ATTATTATTTACAAACTTGCGTTTGTGTTCTTATATATAAATGTTTAAATTTATATCGTGTTTATTTTAAAAATTATTGTCGCTAAAGCTCATTTACTTTTTGAAACTGGTTAAAAGTTTTAAAGAAAGCCTATGTTAATC > 1:735726/1‑141 TATTATTTACAAACTTGCGTTTGTGTTCTTATATATAAATGTTTAAATTTATATCGTGTTTATTTTAAAAATTATTGTCGCTAAAGCTCATTTACTTTTTGAAACTGGTTAAAAGTTTTAAAGAAAGCCTATGTTAATCTT > 2:1010434/1‑141 ATTATTTACAAACTTGCGTTTGTGTTCTTATATATAAATGTTTAAATTTATATCGTGTTTATTTTAAAAATTATTGTCGCTAAAGCTCATTTACTTTTTTAATCTGTTTAAAAGTTTTAAAGAAAGCCTATGTTAATCTTT > 2:548259/1‑141 ATTATTTACAAACTTGCGTTTGTGTTCTTATATATAAATGTTTAAATTTATATCGTGTTTATTTTAAAAATTATTGTCGCTAAAGCTCATTTACTTTTTGAAACTGGTTAAAAGTTTTAAAGAAAGCCTATGTTAATCTTT > 2:263354/1‑141 TATTTACAAACTTGCGTTTGTGTTCTTATATATATATGTTTAAATTTATATCGTGTTTATTTTAAAAATTATTGTCGCTAAAGCTCATTTACTTTTTGAAACTGGTTAAAAGTTTTAAAGAAAGCCTATGTTAATCTTTTT < 1:1007571/141‑1 ACTGTTGTTGACACATCTGTAGTCATTACACCTGATGCTGCTAAAACCATCAATAGTAAACTAAATACCGTTGCTAAACCCTGAACAACAATTCCTATTATTGTCATTATTTTGATCGATTTTTCCATTGTCTTACTCCTTTATTATTATT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP000730/353844‑353694‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttattattattTACAAACTTGCGTTTGTGTTCTTATATATAAATGTTTAAATTTATATCGTGTTTATTTTAAAAATTATTGTCGCTAAAGCTCATTTACTTTTTGAAACTGGTTAAAAGTTTTAAAGAAAGCCTATGTTAATCTTTTT < CP000730/353690‑353554 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |