| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP000730 | = 1920358 | 81 (0.910) | 5 (0.060) | 4/250 | NT | 6.2% | coding (968/1002 nt) | menC | possible o‑succinylbenzoic acid (OSB) synthetase |
| ? | CP000730 | = 1920382 | 73 (0.850) | coding (944/1002 nt) | menC | possible o‑succinylbenzoic acid (OSB) synthetase | |||||
GGTATCCGTCGTATTTTAAAATGTCATCCGCTTCATAAAGGCGGCTTTGACCCTGTTCCGTTAAAAAAAGACAAGTCAGCAAGCAAGCATTCACATAAACATAACCATTAATATGGTTGTAATTGAGTTATATCCACTAAAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP000730/1920217‑1920358‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaagAGGGGCG‑‑AC‑‑TCGAATTTCGCCCCCCTTTAGTGGATATAACTCAATTACAACCATATTAATGGTTATGTTTATGTGAATGCTTGCTTGCTGACTTGTCTTTTTTTAACGGAACAGGGTCAAAGCCGCCTTTATGAAGCG < CP000730/1920382‑1920245 GGTATTCGTCGTATTTTAAAATGTCATCCGCTTCATAAAGGCGGCTTTGACCCTGTTCCGTTAAAAAAAGACAAGTCAGCAAGCAAGCATTCACATAAACATAACCATTAATATGGTTGTAATTGAGTTATATCCACTAAA > 1:778102/1‑141GGTATCCGTCGTATTTTAAAATGTCATCCGCTTCATAAAGGCGGCTTTGACCCTGTTCCGTTAAAAAAAGACAAGTCAGCAAGCAAGCATTCACATAAACATAACCATTAATATGGTTGTAATTGAGTTATATCCACTAAA > 1:223651/1‑141 TTTAAAATGTCATCCGCTTCATAAAGGCGGCTTTGACCCTGTTCCGTTAAAAAAAGACAAGTCAGCAAGCAAGCATTCACATAAACATAACCATTAATATGGTTGTAATTGAGTTATATCCACTAAAGGGGGGCG‑‑AC‑‑TCGA < 1:991767/141‑1 TCCGCTTCATAAAGGCGGCTTTGACCCTGTTCCGTTAAAAAAAGACAAGTCAGCAAGCAAGCATTCACATAAACATAACCATTAATATGGTTGTAATTGAGTTATATCCACTAAAGAGGGGCG‑‑AC‑‑TCGAATTTCGCCCCCC < 1:251430/141‑1 TCCGCGTCATAAAGGCGGCTTTGACCCTGTTCCGTTAAAAAAAGACAAGTCAGCAAGCAAGCATTCACATAAACATAACCATTAATATGGTTGTAATTGAGTTATATCCACTAAAGAGGGGCG‑‑AC‑‑TCGAATTTCGCCCCCC < 2:641825/141‑1 GTCAGCAAGCAAGCATTCACATAAACATAACCATTAATATGGTTGTAATTGAGTTATATCCACTAAAGGGGGGCGAAAT‑‑TCGA‑‑GTCGCCCCTCTTTAGTGGATATAACTCAATTACAACCATATTAATGGTTATGTTTATG > 2:899112/1‑141 CCATTAATATGGTTGTAATTGAGTTATATCCACTAAAGGGGGGCG‑‑AAATTCGA‑‑GTCGCCCCTCTTTAGTGGATATAACTCAATTACAACCATATTAATGGTTATGTTTATGTGAATGCTTGCTTGCTGACTTGTCTTTTTT < 1:899112/141‑1 AAAGAGGGGCG‑‑AC‑‑TCGAATTTCGCCCCCCTTTAGTGGATATAACTCAATTACAACCATATTAATGGTTATGTTTATGTGAATGCTTGCTTGCTGACTTGTCTTTTTTTAACGGAACAGGGTCAAAGCCGCCTTTATGAAGC > 1:161360/1‑141 AAGAGGGGCG‑‑AC‑‑TCGAATTTCGCCCCCCTTTAGTGGATATAACTCAATTACAACCATATTAATGGTTATGTTTATGTGAATGCTTGCTTGCTGACTTGTCTTTTTTTATCGGAACAGGGTCAAAGCCGCCTTTATGAAGCG > 2:515334/1‑141 AAGAGGGGCG‑‑AC‑‑TCGAATTTCGCCCCCCTTTAGTGGATATAACTCAATTACAACCATATTAATGGTTATGTTTATGTGAATGCTTGCTTGCTGACTTGTCTTTTTTTAACGGAACAGGGTCAAAGCCGCCTTTATGAAGCG > 1:633194/1‑141 AAGAGGGGCG‑‑AC‑‑TCGAATTTCGCCCCCCTTTAGTGGATATAACTCAATTACAACCATATTAATGGTTATGTTTATGTGAATGCTTGCTTGCTGACTTGTCTGTTTTTAACGGAACAGGGTCAAAGCCGCCTTTATGAAGCG > 1:800083/1‑141 GGTATCCGTCGTATTTTAAAATGTCATCCGCTTCATAAAGGCGGCTTTGACCCTGTTCCGTTAAAAAAAGACAAGTCAGCAAGCAAGCATTCACATAAACATAACCATTAATATGGTTGTAATTGAGTTATATCCACTAAAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP000730/1920217‑1920358‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaagAGGGGCG‑‑AC‑‑TCGAATTTCGCCCCCCTTTAGTGGATATAACTCAATTACAACCATATTAATGGTTATGTTTATGTGAATGCTTGCTTGCTGACTTGTCTTTTTTTAACGGAACAGGGTCAAAGCCGCCTTTATGAAGCG < CP000730/1920382‑1920245 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |