| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP000730 | 2053094 = | 80 (0.900) | 6 (0.070) | 5/242 | NT | 7.9% | intergenic (‑113/+59) | pcrB/yerC | PcrB family protein/possible Trp repressor |
| ? | CP000730 | 2053141 = | 64 (0.770) | intergenic (‑160/+12) | pcrB/yerC | PcrB family protein/possible Trp repressor | |||||
ATTTCTAGAGTGAAGCGTTCATTACAATGGGGTAATGATGCTTATACAATGATTTTAGATCGTATGAATATTGAAACAAATGAATAATAAATGAACGATAAACAATGGTTATCTATCTGCACTAATAAGGTAGATAATCATTGTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP000730/2053239‑2053094‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cattgtttATCGTTCATTTATTATTCATTTGTTTCAATATTCATACGATCTAAAATCATTGTATAAGCATCATTACCCCATTGTAATGAACGCTTCACTCTAGAAATCGTTGCAGTCGATGCTCCAGATTCTTGTTCAATCGTTGCAT > CP000730/2053141‑2053280 ATTTCTAGAGTGAAGCGTTCATTACAATGGGGTAATGATGCTTATACAATGATTTTAGATCGTATGAATATTGAAACAAATGAATAATAAATGAACGATAAACAATGGTTATCTATCTGCACTAATAAGGTAGATAATCAT > 2:67458/1‑141 TTTCTAGAGTGAAGCGTTCATTACAATGGGGTAATGATGCTTATACAATGATTTTAGATCGTATGAATATTGAAACAAATGAATAATAAATGAACGATAAACAATGGTTATCTATCTGCACTAATAAGGTAGATAATCATT < 2:1001583/141‑1 TTTCTAGAGTGAAGCGTTCATTACAATGGGGTAATGATGCTTATACAATGATTTTAGATCGTATGAATATTGAAACAAATGAATAATAAATGAACGATAAACAATGGTTATCTATCTGCACTAATAAGGTAGATAATCATT < 1:847879/141‑1 TTCTAGAGTGAAGCGTTCATTACAATGGGGTAATGATGCTTATACAATGATTTTAGATCGTATGAATATTGAAACAAATGAATAATAAATGAACGATAAACAATGGTTATCTATCTGCACTAATAAGGTAGATAATCATTG > 1:892908/1‑141 CTAGAGTGAAGCGTTCATTACAATGGGGTAATGATGCTTATACAATGATTTTAGATCGTATGAATATTGAAACAAATGAATAATAAATGAACGATAAACAATGGTTATCTATCTGCACTAATAAGGTAGATAATCATTGTT > 2:409438/1‑141 CTAGAGTGAAGCGTTCATTACAATGGGGTAATGATGCTTATACAATGATTTTAGATCGTATGAATATTGAAACAAATGAATAATAAATGAACGATAAACAATGGTTATCTATCTGCACTAATAAGGTAGATAATCATTGTT < 2:764837/141‑1 CTAGAGTGAAGCGTTCATTACAATGGGGTAATGATGCTTATACAATGATTTTAGATCGTATGAATATTGAAACAAATGAATAATAAATGAACGATAAACAATGGTTATCTATCTGCACTAATAAGGTAGATAATCATTGTT > 1:955936/1‑141 CTAGAGTGAAGCGTTCATTACAATGGGGTAATGATGCTTATACAATGATTTTAGATCGTATGAATATTGAAACAAATGAATAATAAATGAACGATAAACAATGGTTATCTATCTGCACTAATAAGGTAGATAATCATTGTT > 2:780895/1‑141 CTAGAGTGAAGCGTTCATTACAATGGGGTAATGATGCTTATACAATGATTTTAGATCGTATGAATATTGAAACAAATGAATAATAAATGAACGATAAACAATGGTTATCTATCTGCACTAATAAGGTAGATAATCATTGTT > 2:328176/1‑141 CTAGAGTGAAGCGTTCATTACAATGGGGTAATGATGCTTATACAATGATTTTAGATCGTATGAATATTGAAACAAATGAATAATAAATGAACGATAAACAATGGTTATCTATCCGCACTAATAAGGTAGATAATCATTGTT > 1:699620/1‑141 TAGAGTGAAGCGTTCATTACAATGGGGTAATGATGCTTATACAATGATTTTAGATCGTATGAATATTGAAACAAATGAATAATAAATGAACGATAAACAATGGTTATCTATCTGCACTAATAAGGTAGATAATCATTGTTT > 1:1018192/1‑141 GTGAAGCGTTCATTACAATGGGGTAATGATGCTTATACAATGATTTTAAATCGAACGAATATTGAAACAAATGGATAATAAATGAACGATAAACAATGGTTATATATCTGAACTAATAAAGTAGATAATCCTTGTTTATCG > 2:159054/1‑141 TGAATATTGAAACAAATGAATAATAAATGAACGATAAACAATGGTTATCTATCTGCACTAATAAGGTAGATAATCATTGTTTATCGTTCATTTATTATTCATTTGTTTCAATATTCATACGATCTAAAATCATTGTATAAG > 1:139600/1‑141 ATAAATGAACGATAAACAATGGTTATCTATCTGCACTAATAAGGTAGATAATCATTGTTTATCGCTCATTTATTATTCATTTGTTTCAATATTCATACGATCTAAAATCATTGTATAAGCAATATTACACCAGTGAAAGGA > 2:549953/1‑141 ATGGTTATCTATCTGCACTAATAAGGTAGATAATCATTGTTTATCGTTCATTTATTATTCATTTGTTTCAATATTCATACGATCTAAAATCATTGTATAAGCATCATTACCCCATTCTAATGAACGCTTCACTCTAGAAAT > 2:1028355/1‑141 AATAAGGTAGATAACCATTGTTTATCGTTCATTTATTATTCATTTGTTTCAATATTCATACGATCTAAAATCATTGTATAAGCATCATTACCCCATTGTAATGAACGCTTCACTCTAGAAATCGTTGCAGTCGATGCTCCA > 2:930546/1‑141 AATAAGGTAGATAACCATTGTTTATCGTTCATTTATTATTCATTTGTTTCAATATTCATACGATCTAAAATCATTGTATAAGCATCATTACCCCATTGTAATGAACGCTTCACTCTAGAAATCGTTGCAGTCGATGCTCCA > 2:757937/1‑141 gttGATTATCATTTTTTATCGTTCATTTATTATTCTTTTGTCTTAATAGTCATACGATGCAAAATCATTGTATACGCATCATTCCCCCATTGTAATGAACGCTTCACTCTAGAAATCGTTGCAGTCGATGCTCCAGATTCT < 1:159054/138‑1 CATTGTTTATCGTTCATTTATTATTCATTTGTTTCAATATTCATACGATCTAAAATCATTGTATAAGCATCATTACCCCATTGTAATGAACGCTTCACTCTAGAAATCGTTGCAGTCGATGCTCCAGATTCTTGTTCAATC > 1:271566/1‑141 GTTTATCGTTCATTTATTATTCATTTGTTTCAATATTCATACGATCTAAAATCATTGTATAAGCATCATTACCCCATTGTAATGAACGCTGCACTCTAGAAATCGTTGCAGTCGATGCTCCAGATTCTTGTTCAATCGTTG > 1:319290/1‑141 TATCGTTCATTTATTATTCATTTGTTTCAATATTCATACGATCTAAAATCATTGTATAAGCATCATTACCCCATTGTAATGAACGCTTCACTCTAGAAATCGTTGCAGTCGATGCTCCAGATTCTTGTTCAATCGTTGCAT < 1:1080317/141‑1 TATCGTTCATTTATTATTCATTTGTTTCAATATTCATACGATCTAAAATCATTGTATAAGCATCATTACCCCATTGTAATGAACGCTTCACTCTAGAAATCGTTGCAGTCGATGCTCCAGATTCTTGTTCAATCGTTGCAT < 1:421888/141‑1 ATTTCTAGAGTGAAGCGTTCATTACAATGGGGTAATGATGCTTATACAATGATTTTAGATCGTATGAATATTGAAACAAATGAATAATAAATGAACGATAAACAATGGTTATCTATCTGCACTAATAAGGTAGATAATCATTGTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP000730/2053239‑2053094‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cattgtttATCGTTCATTTATTATTCATTTGTTTCAATATTCATACGATCTAAAATCATTGTATAAGCATCATTACCCCATTGTAATGAACGCTTCACTCTAGAAATCGTTGCAGTCGATGCTCCAGATTCTTGTTCAATCGTTGCAT > CP000730/2053141‑2053280 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |