| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP000730 | 2361955 = | 103 (1.160) | 6 (0.070) | 6/240 | NT | 6.1% | coding (351/1293 nt) | secY1 | Sec family Type I general secretory pathway preprotein translocase SecY |
| ? | CP000730 | 2361978 = | 90 (1.090) | coding (328/1293 nt) | secY1 | Sec family Type I general secretory pathway preprotein translocase SecY | |||||
TTTCTATTTTTGCAATGGGTATTGTACCCTACATCACTGCATCAATCGTAATGCAATTATTACAAATGGATATTGTCCCTAAATTCTCAGAATGGGCAAAACAAGGTGAAGTAGGTAGAAGAAAGTTAAATAACGTTACTCGTTATTTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP000730/2362103‑2361955‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgttatttaACTTTCTTCTACCTACTTCACCTTGTTTTGCCCATTCTGAGAATTTAGGGACAATATCCATTTGTAATAATTGCATTACGATTGATGCAGTGATGTAGGGTACAATACCCATTGCAAAAATAGAAAATCGTTTCA > CP000730/2361978‑2362112 TTTCTATTTTTGCAATGGGTATTGTACCCTACATCACTGCATCAATCGTAATGCAATTATTACAAATGGATATTGTCCCTAAATTCTCAGAATGGGCAAAACAAGGTGAAGTAGGTAGAAGAAAGTTAAATAACGTTACTC < 2:356052/141‑1TTTCTATTTTTGCAATGGGTATTGTACCCTACATCACTGCATCAATCGTAATGCAATTATTACAAATGGATATTGTCCCTAAATTCTCAGAATGGGCAAAACAAGGTGAAGTAGGTAGAAGAAAGTTAAATAACGTTACTC < 2:755799/141‑1 TTCTATTTTTGCAATGGGTATTGTACCCTACATCACTGCATCAATCGTAATGCAATTATTACAAATGGATATTGTCCCTAAATTCTCAGAATGGGCAAAACAAGGTGAAGTAGGTAGAAGAAAGTTAAATAACGTTACTCG > 1:40422/1‑141 TTCTATTTTTGCAATGGGTATTGTACCCTACATCACTGCATCAATCGTAATGCAATTATTACAAATGGATATTGTCCCTAAATTCTCAGAATGGGCAAAACAAGGTGAAGTAGGTAGAAGAAAGTTAAATAACGTTACTCG > 2:373959/1‑141 TTCTATTTTTGCAATGGGTATTGTACCCTACATCACTGCATCAATCGTAATGCAATTATTACAAATGGATATTGTCCCTAAATTCTCAGAATGGGCAAAACAAGGTGAAGTAGGTAGAAGAAAGTTAAATAACGTTACTCG > 1:949027/1‑141 ATTTTTGCAATGGGTATTGTACCCTACATCACTGCATCAATCGTAATGCAATTATTACAAATGGATATTGTCCCTAAATTCTCAGAATGGGCAAAACATGGTGAAGTAGGTAGAAATCAGTTAAATAACGTTACTCGTTAT > 1:855853/1‑141 TTTTGCAATGGGTATTGTACCCTACATCACTGCATCAATCGTAATGCAATTATTACAAATGGATATTGTCCCTAAATTCTCAGAATGGGCAAAACAAGGTGAAGTAGGTAGAAGAAAGTTAAATAACGTTACTCGTTATTT < 2:920186/141‑1 TTTGCAATGGGTATTGTACCCTACATCACTGCATCAATCGTAATGCAATTATTACAAATGGATATTGTCCCTAAATTCTCAGAATGGGCAAAACAAGGTGAAGTAGGTAGAAGAAAGTTAAATAACGTTACTCGTTATTTA > 2:38522/1‑141 ACATCACTGCATCAATCGTAATGAAATTATTACAAATGGATATTGTCCCTAAATTCTCAGAATGGGCAAAACAAGGTGAAGTAGGTAGAAGAAAGTTAAATAACGAGTAACGTTATTTAACTTTCTTCTACCTACTTCACC < 2:303399/141‑1 TGAAGTAGGTAGAAGAAAGTTAAATAACGTTACTCGTTATTTAACTTTCTTCTACCTACTTCA < 2:8130/63‑1 TGAAGTAGGTAGAAGAAAGTTAAATAACGTTACTCGTTATTTAACTTTCTTCTACCTACTTCA > 1:8130/1‑63 TAACGTTACTCGTTATTTAACTTTCTTCTACCTACTTCACCTTGTTTTGCCCATTCTGAGAATTTAGGGACAATATCCATTTGTAATAATTGCATTACGATTGATGCAGTGATGTAGGGTACAATACCCAT > 2:239918/1‑131 TAACGTTACTCGTTATTTAACTTTCTTCTACCTACTTCACCTTGTTTTGCCCATTCTGAGAATTTAGGGACAATATCCATTTGTAATAATTGCATTACGATTGATGCAGTGATGTAGGGTACAATACCCAT < 1:239918/131‑1 GTTACTCGTTATTTAACTTTCTTCTACCTACTTCACCTTGTTTTGCCCATTCTGAGAATTTAGGGACAATATCCATTTGTAATAATTGCATTACGATTGATGCAGTGATGTAGGGTACAATACCCATTGCAAAAATAGAAA > 2:6144/1‑141 GTTATTTAACTTTCTTCTACCTACTTCACCTTGTTTTGCCCATTCTGAGAATTTAGGGACAATATCCATTTGTAATAATTGCATTACGATTGATGCAGTGATGTAGGGTACAATACCCATTGCAAAAATAGAAAATCGTTT < 2:625767/141‑1 GTTATTTAACTTTCTTCTACCTACTTCACCTTGTTTTGCCCATTCTGAGAATTTAGGGACAATATCCATTTGTAATAATTGCATTACGATTGATGCAGTGATGTAGGGTACAATACCCATTGCAAAAATAGAAAATCGTTT < 2:138574/141‑1 TATTTAACTTTCTTCTACCTACTTCACCTTGTTTTGCCCATTCTGAGAATTTAGGGACAATATCCATTTGTAATAATTGCATTACGATTGATGCAGTGATGTAGGGTACAATACCCATTGCAAAAATAGAAAATCGTTTCA < 1:1034111/141‑1 TTTCTATTTTTGCAATGGGTATTGTACCCTACATCACTGCATCAATCGTAATGCAATTATTACAAATGGATATTGTCCCTAAATTCTCAGAATGGGCAAAACAAGGTGAAGTAGGTAGAAGAAAGTTAAATAACGTTACTCGTTATTTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP000730/2362103‑2361955‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgttatttaACTTTCTTCTACCTACTTCACCTTGTTTTGCCCATTCTGAGAATTTAGGGACAATATCCATTTGTAATAATTGCATTACGATTGATGCAGTGATGTAGGGTACAATACCCATTGCAAAAATAGAAAATCGTTTCA > CP000730/2361978‑2362112 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |