New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	2628271 =	86 (0.970)	4 (0.050)	4/242	NT	4.8%	intergenic (+141/+70)	sarU/galU	staphylococcal accessory regulator U/UTP‑‑glucose‑1‑phosphate uridylyltransferase
	?	CP000730	2628335 =	79 (0.950)					intergenic (+205/+6)	sarU/galU	staphylococcal accessory regulator U/UTP‑‑glucose‑1‑phosphate uridylyltransferase
Rejected: Frequency below/above cutoff threshold.

ACTACCATAGAATATGCATTGAAAGATGACAGTATGCGAGAAGAATTAACACGATTTATTAAAGCATTAGGTTTATAACATTAAAAGCATGATACTCAGTAAAATTGGAACACGAAATGGTGAACTAAATTGAATGAGTGTCATGCTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP000730/2628418‑2628271 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcatgcttTTAATGTTATAAACCTAATGCTTTAATAAATCGTGTTAATTCTTCTCGCATACTGTCATCTTTCAATGCATATTCTATGGTAGTTTTAACGAAGCCTAATTTTTCTCCAACGTCATAACGTTCGCCTTCGAAGTCATATG  >  CP000730/2628335‑2628474                                                                                                                                                                                                                                                                                                  ACTACCATAGAATATGCATTGAAAGATGACAGTATGCGAGAAGAATTAACACGATTTATTAAAGCATTAGGTTTATAACATTAAAAGCATGATACTCAGTAAAATTGGAACACGAAATGGTGAACTAAATTGAATGAGTGT                                                                                                                                                     <  1:573416/141‑1     CCATAGAATATGCATTGAAAGATGACAGTATGCGAGAAGAATTAACACGATTTATTAAAGCATTAGGTTTATAACATTAAAAGCATGATACTCAGTAAAATTGGAACACGAAATGGTGAACTAAATTGAATGAGTGTCATG                                                                                                                                                 <  1:56300/141‑1      CATAGAATATGCATTGAAAGATGACAGTATGCGAGAAGAATTAACACGATTTATTAAAGCATTAGGTTTATAACATTAAAAGCATGATACTCAGTAAAATTGGAACACGAAATGGTGAACTAAATTGAATGAGTGTCATGC                                                                                                                                                <  2:948472/141‑1      CATAGAATATGCATTGAAAGATGACAGTATGCGAGAAGAATTAACACGATTTATTAAAGCATTAGGTTTATAACATTAAAAGCATGATACTCAGTAAAATTGGAACACGAAATGGTGAACTAAATTGAATGAGTGTCATGC                                                                                                                                                <  2:810222/141‑1       gTAGAATATGCATTGAAAGATGACAGTATGCGAGAAGAATTAACACGCATTATTAACGCAATACGTGTATTACAGGAAAATCATGATACTCTGTAAAATTGGAACACGAAATGGTGAACTAAATTGAATGAGTGTCATGCT                                                                                                                                               >  1:1029197/2‑141                                                                                 TTAAAAGCATGATACTCAGTAAAATTGGAACACGAAATGGTGAACTAAATTGAATGAGTGTCATGCTTTTAATGTTATAAACCTAATGCTTTAATAAATCGTGTTAATTCTTCTCGCATACTGTCATCTTTCAATGCATAT                                                                     >  1:707239/1‑141                                                                                  TAAAAGCATGATACTCAGTAAAATTGGAACACGAAATGGTGAACTAAATTGAATGAGTGTCATGCTTTTAATGTTATAAACCTAATGCTTTAATAAATCGTGTTAATTCTTCTCGCATACTGTCATCTTTCAATGCATATT                                                                    >  2:114594/1‑141                                                                                       GCATGATACTCAGTAAAATTGGAACACGAAATGGTGAACTAAATTGAATGAGTGTCATGCTTTTAATGTTATAAACCTAATGCTTTAATAAATCGTGTTAATTCTTCTCGCATACTGTCATCTTTCAATGCATATTCTATG                                                               >  1:717757/1‑141                                                                                         ATGATACTCAGTAAAATTGGAACACGAAATGGTGAACTAAATTGAATGAGTGTCATGCTTTTAATGTTATAAACCTAATGCTTTAATAAATCGTGTTAATTCTTCTCGCATACTGTCATCTTTCAATGCATATTCTATGGT                                                             >  1:968702/1‑141                                                                                                                                               ATGCTTTTAATGTTATAAACCTAATGCTTTAATAAATCGTGTTAATTCTTCTCGCATACTGTCATCTTTCAATGCATATTCTATGGTAGTTTTAACGAAGCCTAATTTTTCTCCAACGTCATAACGTTCGCCTTCGAAGTC       <  2:370755/141‑1                                                                                                                                                    TTTAATGTTATAAACCTAATGCTTTAATAAATCGTGTTAATTCTTCTCGCATACTGTCATCTTTCAATGCATATTCTATGGTAGTTTTAACGAAGCCTAATTTTTCTCCAACGTCATAACGTTCGCCTTCGAAGTCATATG  <  2:25465/141‑1                                                                                                                                                                                                                                                                                                  ACTACCATAGAATATGCATTGAAAGATGACAGTATGCGAGAAGAATTAACACGATTTATTAAAGCATTAGGTTTATAACATTAAAAGCATGATACTCAGTAAAATTGGAACACGAAATGGTGAACTAAATTGAATGAGTGTCATGCTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP000730/2628418‑2628271 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcatgcttTTAATGTTATAAACCTAATGCTTTAATAAATCGTGTTAATTCTTCTCGCATACTGTCATCTTTCAATGCATATTCTATGGTAGTTTTAACGAAGCCTAATTTTTCTCCAACGTCATAACGTTCGCCTTCGAAGTCATATG  >  CP000730/2628335‑2628474

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.