New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP000730 1129293 =77 (0.870)6 (0.070) 5/242 NT 7.8% intergenic (+71/‑256) USA300HOU_1055/USA300HOU_1056 hypothetical membrane protein/hypothetical protein
?CP000730 1129331 = 69 (0.830)intergenic (+109/‑218) USA300HOU_1055/USA300HOU_1056 hypothetical membrane protein/hypothetical protein

TTATTATTATATGTATTATATCCAGGTGGAGAAACGACATCACTGATTAAAGCAACATTTGGTCATTAATATGCTTATACAAATGATACTAATCTGATAAGGCAATTTGTTTTATCAGGTTTTTTGATGAAGAATAGTCGGACAGTTGATGGTATTCATTTGATACCTTAACTGTCCATTTTTTTATACATATTTTAATCTTAATAATGAAATTCAACCTGAAAACATAAAGATAGGTTATGATATAGAGTGTAGGGAAAATCTTTATGACGTTAAAA  >  CP000730/1129154‑1129431
                                                                                                                                           |                                                                                                                                           
ttattattaTATGTATTATATCCAGGTGGAGAAACGACATCACTGATTAAAGCAACATTTGGTCATTAATATGCTTATACAAATGATACTAATCTGATAAGGCAATTTGTTTTATCAGGTTTTTTGATGAAGAATAGTCgg                                                                                                                                            >  1:993208/1‑141 (MQ=255)
ttattattaTATGTATTATATCCAGGTGGAGAAACGACATCACTGATTAAAGCAACATTTGGTCATTAATATGCTTATACAAATGATACTAATCTGATAAGGCAATTTGTTTTATCAGGTTTTTTGATGAAGAATAGTCgg                                                                                                                                            <  1:867045/141‑1 (MQ=255)
 tattattatATGTATTATATCCAGGTGGAGAAACGACATCACTGATTAAAGCAACATTTGGTCATTAATATGCTTATACAAATGATACTAATCTGATAAGGCAATTTGTTTTATCAGGTTTTTTGATGAAGAATAGTCGGa                                                                                                                                           <  2:920704/141‑1 (MQ=255)
 tattattatATGTATTATATCCAGGTGGAGAAACGACATCACTGATTAAAGCAACATTTGGTCATTAATATGCTTATACAAATGATACTAATCTGATAAGGCAATTTGTTTTATCAGGTTTTTTGATGAAGAATAGTCGGa                                                                                                                                           <  1:662668/141‑1 (MQ=255)
  gtcgtttcgataaaacaaaatcatcttcaggcataattttaacgtcataaagattttccctacactctatatcataacctatctttatgttttcaggttgaatttcattattaagattaaaatatgtataaaaaaatGGAc                                                                                                                                          >  1:273427‑M1/138‑141 (MQ=255)
  attattatATGTATTATATCCAGGTGGAGAAACGACATCACTGATTAAAGCAACATTTGGTCATTAATATGCTTATACAAATGATACTAATCTGATAAGGCAATTTGTTTTATCAGGTTTTTTGATGAAGAATAGTCGGAc                                                                                                                                          >  1:438367/1‑141 (MQ=255)
   tcgtttcgataaaacaaaatcatcttcaggcataattttaacgtcataaagattttccctacactctatatcataacctatctttatgttttcaggttgaatttcattattaagattaaaatatgtataaaaaaatGGACa                                                                                                                                         <  2:1043472‑M1/5‑1 (MQ=255)
     attatATGTATTATATCCAGGTGGAGAAACGACATCACTGATTAAAGCAACATTTGGTCATTAATATGCTTATACAAATGATACTAATCTGATAAGGCAATTTGTTTTATCAGGTTTTTTGATGAAGAATAGTCGGACAGt                                                                                                                                       <  2:934511/141‑1 (MQ=255)
      ttatATGTATTATATCCAGGTGGAGAAACGACATCACTGATTAAAGCAACATTTGGTCATTAATATGCTTATACAAATGATACTAATCTGATAAGGCAATTTGTTTTATCAGGTTTTTTGATGAAGAATAGTCGGACAGtt                                                                                                                                      <  2:130182/141‑1 (MQ=255)
      ttatATGTATTATATCCAGGTGGAGAAACGACATCACTGATTAAAGCAACATTTGGTCATTAATATGCTTATACAAATGATACTAATCTGATAAGGCAATTTGTTTTATCAGGTTTTTTGATGAAGAATAGTCGGACAGtt                                                                                                                                      >  2:955142/1‑141 (MQ=255)
         tatGTATTATATCCAGGTGGAGAAACGACATCACTGATTAAAGCAACATTTGGTCATTAATATGCTTATACAAATGATACTAATCTGATAAGGCAATTTGTTTTATCAGGTTTTTTGATGAAGAATAGTCGGACAGTTGAt                                                                                                                                   <  2:989029/141‑1 (MQ=255)
         tatGTATTATATCCAGGTGGAGAAACGACATCACTGATTAAAGCAACATTTGGTCATTAATATGCTTATACAAATGATACTAATCTGATAAGGCAATTTGTTTTATCAGGTTTTTTGATGAAGAATAGTCGGACAGTTGAt                                                                                                                                   >  1:760667/1‑141 (MQ=255)
         tatGTATTATATCCAGGTGGAGAAACGACATCACTGATTAAAGCAACATTTGGTCATTAATATGCTTATACAAATGATACTAATCTGATAAGGCAATTTGTTTTATCAGGTTTTTTGATGAAGAATAGTCGGACAGTTGAt                                                                                                                                   >  1:140953/1‑141 (MQ=255)
         tatGTATTATATCCAGGTGGAGAAACGACATCACTGATTAAAGCAACATTTGGTCATTAATATGCTTATACAAATGATACTAATCTGATAAGGCAATTTGTTTTATCAGGTTTTTTGATGAAGAATAGTCGGACAGTTGAt                                                                                                                                   <  1:1045512/141‑1 (MQ=255)
          atGTATTATATCCAGGTGGAGAAACGACATCACTGATTAAAGCAACATTTGGTCATTAATATGCTTATACAAATGATACTAATCTGATAAGGCAATTTGTTTTATCAGGTTTTTTGATGAAGAATAGTCGGACAGTTGATg                                                                                                                                  >  1:82477/1‑141 (MQ=255)
           tGTATTATATCCAGGTGGAGAAACGACATCACTGATTAAAGCAACATTTGGTCATTAATATGCTTATACAAATGATACTAATCTGATAAGGCAATTTGTTTTATCAGGTTTTTTGATGAAGAATAGTCGGACAGTTGATgg                                                                                                                                 <  2:1017882/141‑1 (MQ=255)
           tGTATTATATCCAGGTGGAGAAACGACATCACTGATTAAAGCAACATTTGGTCATTAATATGCTTATACAAATGATACTAATCTGATAAGGCAATTTGTTTTATCAGGTTTTTTGATGAAGAATAGTCGGACAGTTGATgg                                                                                                                                 <  2:115834/141‑1 (MQ=255)
                      cAGGTGGAGAAACGACATCACTGATTAAAGCAACATTTGGTCATTAATATGCTTATACAAATGATACTAATCTGATAAGGCAATTTGTTTTATCAGGTTTTTTGATGAAGAATAGTCGGACAGTTGATGGTATTCATTTGa                                                                                                                      <  1:42276/141‑1 (MQ=255)
                        ggTGGAGAAACGACATCACTGATTAAAGCAACATTTGGTCATTAATATGCTTATACAAATGATACTAATCTGATAAGGCAATTTGTTTTATCAGGTTTTTTGATGAAGAATAGTCGGACAGTTGATGGTATTCATTTGATa                                                                                                                    >  1:446777/1‑141 (MQ=255)
                           ttcaggcataattttaacgtcataaagattttccctacactctatatcataacctatctttatgttttcaggttgaatttcattattaagattaaaatatgtataaaaaaatGGACAGTTGATGGTATTCATTTGATACCt                                                                                                                 >  2:992328‑M1/113‑141 (MQ=255)
                             agaAACGACATCACTGATTAAAGCAACATTTGGTCATTAATATGCTTATACAAATGATACTAATCTGATAAGGCAATTTGTTTTATCAGGTTTTTTGTTGAAGAATAGTCGGACAGTTGATGGTATTCATTTGATACCTTa                                                                                                              >  2:1073034/1‑141 (MQ=255)
                             agaAACGACATCACTGATTAAAGCAACATTTGGTCATTAATATGCTTATACAAATGATACTAATCTGATAAGGCAATTTGTTTTATCAGGTTTTTTGATGAAGAATAGTCGGACAGTTGATGGTATTCATTTGATACCTTa                                                                                                              >  1:558500/1‑141 (MQ=255)
                               gtcataattttaacgtcattaagattttccctacactctatatcataatctatctttatgttttcaggttgaatttcattattaagattaaaatctgtataaaaaaatGGACAGTTGATGGTATTCATTTGATACCTTAAc                                                                                                            >  2:1084428‑M1/109‑141 (MQ=255)
                               ggcataattttaacgtcataaagattttccctacactctatatcataacctatctttatgttttcaggttgaatttcattattaagattaaaatatgtataaaaaaatGGACAGTTGATGGTATTCATTTGATACCTTAAc                                                                                                            >  2:95523‑M1/109‑141 (MQ=255)
                                 cataattttaacgtcataaagattttccctacactctatatcataacctatctttatgttttcaggttgaatttcattattaagattaaaatatgtataaaaaaatGGACAGTTGATGGTATTCATTTGATACCTTAACTg                                                                                                          >  1:755464‑M1/107‑141 (MQ=255)
                                  cGACATCACTGATTAAAGCAACATTTGGTCATTAATATGCTTATACAAATGATACTAATCTGATAAGGCAATTTGTTTTATCAGGTTTTTTTATGTATAATAGTCGGACAGTTGATGGTATTCATTTGATACCTTAACTGt                                                                                                         >  2:354944/1‑141 (MQ=255)
                                  cGACATCACTGATTAAAGCAACATTTGGTCATTAATATGCTTATACAAATGATACTAATCTGATAAGGCAATTTGTTTTATCAGGTTTTTTGATGAAGAATAGTCGGACAGTTGATGGTATTCATTTGATACCTTAACTGt                                                                                                         >  1:495274/1‑141 (MQ=255)
                                  cGACATCACTGATTAAAGCAACATTTGGTCATTAATATGCTTATACAAATGATACTAATCTGATAAGGCAATTTGTTTTATCAGGTTTTTTGATGAAGAATAGTCGGACAGTTGATGGTATTCATTTGATACCTTAACTGt                                                                                                         <  1:200919/141‑1 (MQ=255)
                                    aattttaacgtcataaagattttccctacactctatatcataacctatctttatgttttcaggttgaatttcattattaagattaaaatatgtataaaaaaatGGACAGTTGATGGTATTCATTTGATACCTTAACTGTcc                                                                                                       >  1:1045427‑M1/104‑141 (MQ=255)
                                     cATCACTGATTAAAGCAACATTTGGTCATTAATATGCTTATACAAATGATACTAATCTGATAAGGCAATTTGTTTTATCAGGTTTTTTGATGAAGAATAGTCGGACAGTTGATGGTATTCATTTGATACCTTAACTGTCCa                                                                                                      >  2:210896/1‑141 (MQ=255)
                                     cATCAATGATTAAAGCAACATTTGGTCATTAATATGCTTATACAAATGATACTAATCTGATAAGGCAATTTGTTTTATCAGGTTTTTTGATGAAGAATAGTCGGACAGTTGATGGTATTCATTTGATACCTTAACTGTCCa                                                                                                      >  2:813528/1‑141 (MQ=255)
                                       tCACTGATTAAAGCAACATTTGGTCATTAATATGCTTATACAAATGATACTAATCTGATAAGGCAATTTGTTTTATCAGGTTTTTTGATGAAGAATAGTCGGACAGTTGATGGTATTCATTTGATACCTTAACTGTCCAtt                                                                                                    >  2:600452/1‑141 (MQ=255)
                                        cACTGATTAAAGCAACATTTGGTCATTAATATGCTTATACAAATGATACTAATCTGATAAGGCAATTTGTTTTATCAGGTTTTTTGATGAAGAATAGTCGGACAGTTGATGGTATTCATTTGATACCTTAACTGTCCAttt                                                                                                   >  2:345350/1‑141 (MQ=255)
                                         aCTGATTAAAGCAACATTTGGTCATTAATATGCTTATACAAATGATACTAATCTGATAAGGCAATTTGTTTTATCAGGTTTTTTGATGAAGAATAGTCGGACAGTTGATGGTATTCATTTGATACCTTAACTGTCCAtttt                                                                                                  <  2:524196/141‑1 (MQ=255)
                                           tGATTAAAGCAACATTTGGTCATTAATATGCTTATACAAATGATACTACTCTGATAAGGCAATTTGTTTTATCAGGTTTTTTGATGAAGAATAGTCGGACAGTTGATGGTATTCATTTGATACCTTAACTGTCCAtttttt                                                                                                >  1:247694/1‑141 (MQ=255)
                                               tAAAGCAACATTTGGTCATTAATATGCTTATACAAATGATACTAATCTGATAAGGCAATTTGTTTTATCAGGTTTTTTGATGAAGAATAGTCGGACAGTTGATGGTATTCATTTGATACCTTAACTGTCCATTTTTTtata                                                                                            >  1:764628/1‑141 (MQ=255)
                                               tAAAGCAACATATGGTCATTAATATGCTTATACAAATGATACTAATCTGATAAGGCAATTTGTTTTATCAGGTTTTTTGATGAAGAATAGTCGGACAGTTGATGGTATTCATTTGATACCTTAACTGTCCATTTTTTtatc                                                                                            >  2:410385/1‑140 (MQ=255)
                                                   gCAACATTTGGTCATTAATATGCTTATACAAATGATACTAATCTGATAAGGCAATTTGTTTTATCAGGTTTTTTGATGAAGAATAGTCGGACAGTTGATGGTATTCATTTGATACCTTAACTGTCGATTTTTTTATACata                                                                                        >  1:604361/1‑141 (MQ=255)
                                                    cAACATTTGGTCATTAATATGCTTATACAAATGATACTAATCTGATAAGGCAATTTGTTTTATCAGGTTTTTTGATGAAGAATAGTCGGACAGTTGATGGTATTCATTTGATACCTTAACTGTCCATTTTTTTATACatat                                                                                       >  2:532525/1‑141 (MQ=255)
                                                    cAACATTTGGTCATTAATATGCTTATACAAATGATACTAATCTGATAAGGCAATTTGTTTTATCAGGTTTTTTGATGAAGAATAGTCGGACAGTTGATGGTATTCATTTGATACCTTAACTGTCCATTTTTTTATACatat                                                                                       <  1:947995/141‑1 (MQ=255)
                                                      aCATTTGGTCATTAATATGCTTATACAAATGATACTAATCTGATAAGGCAATTTGTTTTATCAGGTTTTTTGATGAAGAATAGTCGGACAGTTGATGGTATTCATTTGATACCTTAACTGTCCATTTTTTTATACATAttt                                                                                     >  2:666416/1‑141 (MQ=255)
                                                      aCATTTGGTCATTAATATGCTTATACAAATGATACTAATCTGATAAGGCAATTTGTTTTATCAGGTTGTTTGATGAAGAATAGTCGGACAGTTGATGGTATTCATTTGATACCTTAACTGTCCATTTTTTTATACGTAttt                                                                                     <  2:138185/141‑1 (MQ=255)
                                                       aaTTTGGTCATTAATATGCTTATACAAATGATACTAATCTGATAAGGCAATTTGTTTTATCAGGTTTTTTGATGAAGAATAGTCGGACAGTTGATGGTATTCATTTGATACCTTAACTGTCCATTTTTTTATACATAtttt                                                                                    <  1:607433/140‑1 (MQ=255)
                                                        aTTTGGTCATTAATATGCTTATACAAATGATACTAATCTGATAAGGCAATTTGTTTTATCAGGTTTTTTGATGAAGAATAGTCGGACAGTTGATGGTATTCATTTGATACCTTAACTGTCCATTTTTTTATACATATTTTa                                                                                   >  2:485279/1‑141 (MQ=255)
                                                          ttGGTCATTAATATGCTTATACAAATGATACTAATCTGATAAGGCAATTTGTTTTATCAGGTTTTTTGATGAAGAATAGTCGGACAGTTGATGGTATTCATTTGATACCTTAACTGTCCATTTTTTTATACATATTTTAAt                                                                                 >  1:978756/1‑141 (MQ=255)
                                                          ttGGTCATTAATATGCTTATACAAATGATACTAATCTGATAAGGCAATTTGTTTTATCAGGTTTTTTGATGAAGAATAGTCGGACAGTTGATGGTATTCATTTGATACCTTAACTGTCCATTTTTTTATACATATTTTAAt                                                                                 >  2:335732/1‑141 (MQ=255)
                                                           tGGTCATTAATATGCTTATACAAATGATACTAATCTGATAAGGCAATTTGTTTTATCAGGTTTTTTGATGAAGAATAGTCGGACAGTTGATGGTATTCATTTGATACCTTAACTGTCCATTTTTTTATACATATTTTAATc                                                                                >  2:73032/1‑141 (MQ=255)
                                                            ggTCATTAATATGCTTATACAAATGATACTAATCTGATAAGGCAATTTGTTTTATCAGGTTTTTTGATGAAGAATAGTCGGACAGTTGATGGTATTCATTTGATACCTTAACTGTCCATTTTTTTATACATATTTTAATCt                                                                               >  1:82270/1‑141 (MQ=255)
                                                             gTCATTAATATGCTTTTACAAATGATACTAATCTGATAAGGCAATTTGTTTTATCAGGTTTTTTGATGAAGAATAGTCGGACAGTTGATGGTATTCATTTGATACCTTAACTGTCCATTTTTTTATACATATTTTAATCtt                                                                              <  2:891050/141‑1 (MQ=255)
                                                             gTCATTAATATGCTTATACAAATGATACTAATCTGATAAGGCAATTTGTTTTATCAGGTTTTTTGATGAAGAATAGTCGGACAGTTGATGGTATTCATTTGATACCTTAACTGTCCATTTTTTTATACATATTTTAATCtt                                                                              >  2:427379/1‑141 (MQ=255)
                                                              tCATTAATATGCTTATACAAATGATACTAATCTGATAAGGCAATTTGTTTTATCAGGTTTTTTGATGAAGAATAGTCGGACAGTTGATGGTATTCATTTGATACCTTAACTGTCCATTTTTTTATACATATTTTAATCTta                                                                             <  2:762818/141‑1 (MQ=255)
                                                                   aaTATGCTTATACAAATGATACTAATCTGATAAGGCAATTTGTTTTATCAGGTTTTTTGATGAAGAATAGTCGGACAGTTGATGGTATTCATTTGATACCTTAACTGTCCATTTTTTTATACATATTTTAATCTTaataat                                                                        <  2:1073196/141‑1 (MQ=255)
                                                                   aaTATGCTTATACAAATGATACTAATCTGATAAGGCAATTTGTTTTATCAGGTTTTTTGATGAAGAATAGTCGGACAGTTGATGGTATTCATTTGATACCTTAACTGTCCATTTTTTTATACATATTTTAATCTTaataat                                                                        <  2:342949/141‑1 (MQ=255)
                                                                   aaTATGCTTATACAAATGATACTAATCTGATAAGGCAATTTGTTTTATCAGGTTTTTTGATGAAGAATAGTCGGACAGTTGATGGTATTCATTTGATACCTTAACTGTCCATTTTTTTATACATATTTTAATCTTaataat                                                                        >  1:616336/1‑141 (MQ=255)
                                                                   aaTATGCTTATACAAATGATACTAATCTGATAAGGCAATTTGTTTTATCAGGTTTTTTGATGAAGAATAGTCGGACAGTTGATGGTATTCATTTGATACCTTAACTGTCCATTTTTTTATACATATTTTAATCTTaataat                                                                        <  1:686725/141‑1 (MQ=255)
                                                                   aaTATGCTTATACAAATGATACTAATCTGATAAGGCAATTTGTTTTATCAGGTTTTTTGATGAAGAATAGTCGGACAGTTGATGGTATTCATTTGATACCTTAACTGTCCATTTTTTTATACATATTTTAATCTTaataat                                                                        <  2:1029837/141‑1 (MQ=255)
                                                                   aaTATGCTTATACAAATGATACTAATCTGATAAGGCAATTTGTTTTATCAGGTTTTTTGATGAAGAATAGTCGGACAGTTGATGGTATTCATTTGATACCTTAACTGTCCATTTTTTTATACATATTTTAATCTTaataat                                                                        <  2:183759/141‑1 (MQ=255)
                                                                   aaTATGCTTATACAAATGATACTAATCTGATAAGGCAATTTGTTTTATCAGGTTTTTTGATGAAGAATAGTCGGACAGTTGATGGTATTCATTTGATACCTTAACTGTCCATTTTTTTATACATATTTTAATCTTaataat                                                                        <  1:788381/141‑1 (MQ=255)
                                                                         cTTATACAAATGATACTAATCTGATAAGGCAATTTGTTTTATCAGGTTTTTTGATGAAGAATAGTCGGACAGTTGATGGTATTCATTTGATACCTTAACTGTCCATTTTTTTATACATATTTTAATCTTAATAATGAAAtt                                                                  <  2:437668/141‑1 (MQ=255)
                                                                         cTTATACAAATGATACTAATCTGATAAGGCAATTTGTTTTATCAGGTTTTTTGATGAAGAATAGTCGGACAGTTGATGGTATTCATTTGATACCTTAACTGTCCATTTTTTTATACATATTTTAATCTTAATAATGAAAtt                                                                  <  1:813528/141‑1 (MQ=255)
                                                                          ttATACAAATGATACTAATCTGATAAGGCAATTTGTTTTATCTGGTTTTTTGATGAAGAATAGTCGGACAGTTGATGGTATTCATTTGATACCTTAACTGTCCATTTTTTTATACATATTTTAATCTTAATAATGAAATTc                                                                 <  1:152313/141‑1 (MQ=255)
                                                                          ttATACAAATGATACTAATCTGATAAGGCAATTTGTTTTATCAGGTTTTTTGATGAAGAATAGTCGGACAGTTGATGGTATTCATTTGATACCTTAACTGTCCATTTTTATATACATATTTTAATCTTAATAATGAAATTc                                                                 >  1:270857/1‑141 (MQ=255)
                                                                               cAAATGATACTAATCTGATAAGGCAATTTGTTTTATCAGGTTTTTTGATGAAGAATAGTCGGACAGTTGATGGTATTCATTTGATACCTTAACTGTCCATTTTTTTATACATATTTTAATCTTAATAATGAAATTCAACCt                                                            <  1:817419/141‑1 (MQ=255)
                                                                                   tGATACTAATCTGATAAGGCAATTTGTTTTATCAGGTTTTTTGATGAAGAATAGTCGGACAGTTGATGGTATTCATTTGATACCTTAACTGTCCATTTTTTTATACATATTTTAATCTTAATAATGAAATTCAACCTGaaa                                                        >  1:734996/1‑141 (MQ=255)
                                                                                        cTAATCTGATAAGGCAATTTGTTTTATCAGGTTTTTTGATGAAGAATAGTCGGACAGTTGATGGTATTCATTTGATACCTTAACTGTCCATTTTTTTATACATATTTTAATCTTAATAATGAAATTCAACCTGAAAACATa                                                   <  1:325239/141‑1 (MQ=255)
                                                                                         tAATCTGATAAGGCAATTTGTTTTATCAGGTTTTTTGATGAAGAATAGTCGGACAGTTGATGGTATTCATTTGATACCTTAACTGTCCATTTTTTTTTTTTTTTTTTTATCTTAATAATGCAATTCAATCTGAAAACATaa                                                  >  2:355061/1‑141 (MQ=255)
                                                                                         tAATCTGATAAGGCAATTTGTTTTATCAGGTTTTTTGATGAAGAATAGTCGGACAGTTGATGGTATTCATTTGATACCTTAACTGTCCATTTTTTTATACATATTTTAATCTTAATAATGAAATTCAACCTGAAAACATaa                                                  >  2:651103/1‑141 (MQ=255)
                                                                                          aaTCTGATAAGGCAATTTGTTTTATCAGGTTTTTTGATGAAGAATAGTCGGACAGTTGATGGTATTCATTTGATACCTTAACTGTCCATTTTTTTATACATATTTTAATCTTAATAATGAAATTCAACCTGAAAACATaaa                                                 >  1:541701/1‑141 (MQ=255)
                                                                                                aTAAGGCAATTTGTTTTATCAGGTTTTTTGATGAAGAATAGTCGGACAGTTGATGGTATTCATTTGATACCTTAACTGTCCATTTTTTTTTTTTTTTTTTAATCTTAATAATGAAATTCAACCTGAAAACATAAAGATAgg                                           >  2:673176/1‑141 (MQ=255)
                                                                                                 taaagtaaTTGGTTTTATCAGGTTTTTTGATGAAGAATAGTCGGACAGTTGATGGTATTCATTTGATACCTTAACTGTCCATTTTTTTATACATATTTTAATCTTAATAATTAAAGTCAACCTGAAAACATAAAGATAGGt                                          <  1:923836/135‑1 (MQ=255)
                                                                                                   aGGCAATTTGTTTTATCAGGTTTTTTGATGAAGAATAGTCGGACAGTTGATGGTATTCATTTGATACCTTAACTGTCCATTTTTTTATACATATTTTAATCTTAATAATGAAATTCAACCTGAAAACATAAAGATAGGTTa                                        <  2:118070/141‑1 (MQ=255)
                                                                                                     gCAATTTGTTTTATCAGGTTTTTTGATGAAGAATAGTCGGACAGTTGATGGTATTCATTTGATACCTTAACTGTCCATTTTTTTATACATATTTTAATCTTAATAATGAAATTAAACCTGAAAACATAAAGATAGGTTATg                                      >  2:530108/1‑141 (MQ=255)
                                                                                                       aaTTTGTTTTATCAGGTTTTTTGATGAAGAATAGTCGGACAGTTGATGGTATTCATTTGATACCTTAACTGTCCATTTTTTTATACATATTTTAATCTTAATAATGAAATTCAACCTGAAACAATAAAGATAGGTTATGat                                    >  1:58835/1‑141 (MQ=255)
                                                                                                        aTTTGTTTTATCAGGTTTTTTGATGAAGAATAGTCGGACAGTTGATGGTATTCATTTGATACCTTAACTGTCCATTTTTTTATACATATTTTAATCTTAATAATGAAATTCAACCTGAAAACATAAAGATAGGTTATGata                                   <  1:985974/141‑1 (MQ=255)
                                                                                                         tttGTTTTATCAGGTTTTTTGATGAAGAATAGTCGGACAGTTGATGGTATTCATTTGATACCTTAACTGTCCATTTTTTTATACATATTTTAATCTTAATAATGAAATTCAACCTGAAAACATAAAGATAGGTTATGatat                                  <  2:764628/141‑1 (MQ=255)
                                                                                                             ttttATCAGGTTTTTTGATGAAGAATAGTCGGACAGTTGATGGTATTCATTTGATACCTTAACTGTCCATTTTTTTATACATATTTTAATCTTAATAATGAAATTCAACCTGAAAAAATAACGATAGGGTGTGATATagag                              >  1:267392/1‑141 (MQ=255)
                                                                                                              tttATCAGGTTTTTTGATGAAGAATGGTCGGACAGTTGATGGTATTCATTTGATACCTTAACTGTCCATTTTTTTATACATATTTTAATCTTAATAATGAAATTCAACCTGAAAACATAAAGATAGGTTATGATATAGAgt                             >  2:775883/1‑141 (MQ=255)
                                                                                                                tATCAGGTTTTTTGATGAAGAATAGTCGGACAGTTGATGGTATTCATTTGATACCTTAACTGTCCATTTTTTTATACATATTTTAATCTTAATAATGAAATTCAACCTGAAAACATAAAGATAGGTTATGATATAGAgtgt                           >  2:110326/1‑141 (MQ=255)
                                                                                                                   cAGGTTTTTTGATGAAGAATAGTCGGACAGTTGATGGTATTCATTTGATACCTTAACTGTCCATTTTTTTATACATATTTTAATCTTAATAATGAAATTCAACCTGAAAACATAAAGATAGGTTATGATATAGAGTGTAgg                        <  1:601203/141‑1 (MQ=255)
                                                                                                                    aGGTTTTTTGATGAAGAATAGTCTGACAGTTGATGGTATTCATTTGATACCTTAACTGTCCATTTTTTTATACATATTTTAATCTTAATAATGAAATTCAACCTGAAAACATAAAGATAGGTTATGATATAGAGTGTAggg                       <  1:433588/141‑1 (MQ=255)
                                                                                                                     ggTTTTTTGATGAAGAATAGTCGGACAGTTGATGGTATTCATTTGATACCTTAACTGTCCATTTTTTTATACATATTTTAATCTTAATAATGAAATTCAACCTGAAAACATAAAGATAGGTTATGATATAGAGTGTAGGGa                      >  2:809697/1‑141 (MQ=255)
                                                                                                                      gTTTTTTGATGAAGAATAGTCGGACAGTTGATGGTATTCATTTGATACCTTAACTGTCCATTTTTTTATACATATTTTAATCTTAATAATGAAATTCAACCTGAAAACATAAAGATAGGTTATGATATAGAGTGTAGGGaa                     >  2:228486/1‑141 (MQ=255)
                                                                                                                      gTTTTTTGATGAAGAATAGTCGGACAGTTGATGGTATTCATTTGATACCTTAACTGTCCATTTTTTTATACATATTTTAATCTTAATAATGAAATTCAACCTGAAAACATAAAGATAGGTTATGATATAGAGTGTAGGGaa                     >  2:309047/1‑141 (MQ=255)
                                                                                                                       ttttttGATGAAGAATAGTCGGACAGTTGATGGTATTCATTTGATACCTTAACTGTCCATTTTTTTATACATATTTTAATCTTAATAATGAAATTCAACCTGAAAACATAAAGATAGGTTATGATATAGAGTGTAGGGaaa                    >  1:612044/1‑141 (MQ=255)
                                                                                                                           ttGATGAAGAATAGTCGGACAGTTGATGGTATTCATTTGATACCTTAACTGTCCATTTTTTTATACATATTTTAATCTTAATAATGAAATTCAACCTGAAAACATAAAGATAGGTTATGATATAGAGTGTAGGGAAAATCt                >  2:655605/1‑141 (MQ=255)
                                                                                                                              atgaAGAATAGTCGGACAGTTGATGGTATTCATTTGATACCTTAACTGTCCATTTTTTTATACATATTTTAATCTTAATAATGAAATTCAACCTGAAAACATAAAGATAGGTTATGATATAGAGTGTAGGGAAAATCTTTa             >  2:54285/1‑141 (MQ=255)
                                                                                                                                gaagaaTAGTCGGACAGTTGATGGTATTCATTTGATACCTTAACTGTCCATTTTTTTATACATATTTTAATCTTAATAATGAAATTCAACCTGAAAACATAAAGATAGGTTATGATATAGAGTGTAGGGAAAATCTTTATg           >  1:505889/1‑141 (MQ=255)
                                                                                                                                  taaaaaaatGGACAGTTAAGGTATCAAATGAATACCATCAACTGTCCATTTTTTTATACATATTTTAATCTTAATAATGAAATTCAACCTGAAAACATAAAGATAGGTTATGTTATAGAGTGTAGGGAAAATCTTTATGAc         <  1:171783‑M1/132‑1 (MQ=255)
                                                                                                                                    aaTAGTCGGACAGTTGATAGTATTCATTTGATACCTTAACTGTCCATTTTTTTATACATATTTTAATCTTAATAATGAAATTCAACCTGAAAACATAAAGATAGGTTATGATATAGAGTGTAGGGAAAATCTTTATGACGt       <  2:1025655/141‑1 (MQ=255)
                                                                                                                                     aTAGTCGGACAGTTGATGGTATTCATTTGATACCTTAACTGTCCATTTTTTTATACATATTTTAATCTTAATAATGAAATTCAACCTGAAAACATAAAGATAGGTTATGATATAGAGTGTAGGGAAAATCTTTATGACGtt      <  1:12139/141‑1 (MQ=255)
                                                                                                                                       aGTCGGACAGTTGATGGTATTCATTTGATACCTTAACTGTCCATTTTTTTATACATATTTTAATCTTAATAATGAAATTCAACCTGAAAACATAAAGATAGGTTATGATATAGAGTGTAGGGAAAATCTTTATGACGTTaa    >  1:1013599/1‑141 (MQ=255)
                                                                                                                                        gTCGGACAGTTGATGGTATTCATTTGATACCTTAACTGTCCATTTTTTTATACATATTTTAATCTTAATAATGAAATTCAACCTGAAAACATAAAGATAGGTTATGATATAGAGTGTAGGGAAAATCTTTATGACGTTaaa   >  1:595256/1‑141 (MQ=255)
                                                                                                                                         tCGGACAGTTGATGGTATTCATTTGATACCTTAACTGTCCATTTTTTTTTTTTTTTTTTAATCTTAATAATGAAATTCAACCTGAAAACATAAAGATAGGTTATGATATAGAGTGTAGGGAAAATCTTTATGACGTTaaaa  >  2:1038884/1‑141 (MQ=255)
                                                                                                                                           |                                                                                                                                           
TTATTATTATATGTATTATATCCAGGTGGAGAAACGACATCACTGATTAAAGCAACATTTGGTCATTAATATGCTTATACAAATGATACTAATCTGATAAGGCAATTTGTTTTATCAGGTTTTTTGATGAAGAATAGTCGGACAGTTGATGGTATTCATTTGATACCTTAACTGTCCATTTTTTTATACATATTTTAATCTTAATAATGAAATTCAACCTGAAAACATAAAGATAGGTTATGATATAGAGTGTAGGGAAAATCTTTATGACGTTAAAA  >  CP000730/1129154‑1129431

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.