New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	= 1843478	53 (0.600)	3 (0.040)	3/240	NT	5.4%	intergenic (‑162/‑220)	tyrS/sgtA	tyrosine‑‑tRNA ligase/possible transglycosylase
	?	CP000730	= 1843483	55 (0.670)					intergenic (‑167/‑215)	tyrS/sgtA	tyrosine‑‑tRNA ligase/possible transglycosylase

TTATTGAATACTTGTTAAAATACTTTAAAGTTTTTTGAACGTAAAAAAAACCCTTACAACAAATATGTAAGGGCGCGATTGCACGTTACCACCAAACTTAAACATAATCATAAGATAATGTTCACTCTATTAATGATACGTTCATTAATAAACGTAGGACATGTTAGTTATAAAGGTGTATTCATATTATTAAAAACACTAGTTCACAGCGACCACTAGCTCTCTGATGATTTCAAATAATATTACTTGTCCTTTTATCCTATTCTTTATGCATTTTCCCT  >  CP000730/1843343‑1843623                                                                                                                                             |                                                                                                                                             ttattGAATACTTGTTAAAATACTTTAAAGTTATTTGAACGTAAAAAAAACCCTTACAACAAATATGTAAGGGCGCGATTGCACGTTACCACCAAACTTAAACATAATCATAAGATAATGTTCACTCTATTAATGATACGt                                                                                                                                              <  2:103059/141‑1 (MQ=255)      gAATACTTGTTAAAATACTTTAAAGTTTTTTGAACGTAAAAAAAACCCTTACAACAAATATGTAAGGGCGCGATTGCACGTTACCACCAAACTTAAACATAATCATAAGATAATGTTCACTCTATTAATGATACGTtcatt                                                                                                                                         <  1:720698‑M2/141‑6 (MQ=255)      gAATACTTGTTAAAATACTTTAAAGTTTTTTGAACGTAAAAAAAACCCTTACAACAAATATGTAAGGGCGCGATTGCACGTTACCACCAAACTTAAACATAATCATAAGATAATGTTCACTCTATTAATGATACGTtcatt                                                                                                                                         <  1:979519‑M2/141‑6 (MQ=255)        aTACTTGTTAAAATACTTTAAAGTTTTTTGAACGTAAAAAAAACCCTTACAACAAATATGTAAGGGCGCGATTGCACGTTACCACCAAACTTAAACATAATCATAAGATAATGTTCACTCTATTAATGATACGTtcattaa                                                                                                                                       >  2:442943‑M2/1‑134 (MQ=255)          aCTTGTTAAAATACTTTAAAGTTTTTTGAACGTAAAAAAAACCCTTACAACAAATATGTAAGGGCGCGATTGCACGTTACCACCAAACTTAAACATAATCATAAGATAATGTTCACTCTATTAATGATACGTtcattaata                                                                                                                                     >  1:396835‑M2/1‑132 (MQ=255)             tGTTAAAATACTTTAAAGTTTTTTGAACGTAAAAAAAACCCTTACAACAAATATGTAAGGGCGCGATTGCACGTTACCACCAAACTTAAACATAATCATAAGATAATGTTCACTCTATTAATGATACGTTCATTAATaaat                                                                                                                                  >  1:80233/1‑140 (MQ=255)               ttAAAATACTTTAAAGTTTTTTGAACGT‑TAAAAAACCCTTACAACAAATATGTAAGGGCGCGATTGCACGTTACCACCAAACTTAAACATAATCATAAGATAATGTTCACTCTATTAATGATACGTTCATTAATAAACGTa                                                                                                                               >  2:927663/1‑141 (MQ=255)                tAAAATACTTTAAAGTTTTTTGAACGTAAAAAAAACCCTTACAACAAATATGTAAGGGCGCGATTGCACGTTACCACCAAACTTAAACATAATCATAAGATAATGTTCACTCTATTAATGATACGTTCATTAATAAACGTa                                                                                                                               >  2:410590/1‑141 (MQ=255)                    aTACTTTAAAGTTTTTTGAACGTAAAAAAAACCCTTACAACAAATATGTAAGGGCGCGATTGCACGTTACCACCAAACTTAAACATAATCATAAGATAATGTTCACTCTATTAATGATACGTTCATTAATAAACGTAGGAc                                                                                                                           <  1:931871/141‑1 (MQ=255)                        tttAAAGTTTTTTGAACGTAAAAAAAACCCTTACAACAAATATGTAAGGGCGCGATTGCACGTTACCACCAAACTTAAACATAATCATAAGATAATGTTCACTCTATTAATGATACGTTCATTAATAAACGTAGGACATgt                                                                                                                       <  1:1016428/141‑1 (MQ=255)                         ttAAAGTTTTTTGAACGTAAAAAAAACCCTTACAACAAATATGTAAGGGCGCGATTGCACGTTACCACCAAACTTAAACATAATCATAAGATAATGTTCACTCTATTAATGATACGTTCATTAATAAACGTAGGACATgtt                                                                                                                      <  2:592513/141‑1 (MQ=255)                            aatttttttGAACGTAAAAAAATCCCTTATAACAATTATGTAAGGGCGCGATTGCACGTTACCACCAAACTTAAACATAATCATAAGATAATGTTCACTCTATTAATGATACGTTCATTAATAAACGTAGGACATgttagt                                                                                                                   <  1:314212/138‑1 (MQ=255)                                tttttGAACGTAAAAAAAACCCTTACAACAAATATGTAAGGGCGCGATTGCACGTTACCACCAAACTTAAACATAATCATAAGATAATGTTCACTCTATTAATGATACGTTCATTAATAAACGTAGGACATGTTAGTtata                                                                                                               <  2:576450/141‑1 (MQ=255)                                    tGAACGTAAAAAAAACCCTTACAACAAATATGTAAGGGCGCGATTGCACGTTACCACCAAACTTAAACATAATCATAAGATAATGTTCACTCTATTAATGATACGTTCATTAATAAACGTAGGACATGTTAGTTATAAAgg                                                                                                           <  1:774636/141‑1 (MQ=255)                                        cGTAAAAAAAACCCTTACAACAAATATGTAAGGGCGCGATTGCACGTTACCACCAAACTTAAACATAGTCATAAGATAATGTTCACTCTATTAATGATACGTTCATTAATAAACGTAGGACATGTTAGTTATAAAGGTGTa                                                                                                       <  2:412143/141‑1 (MQ=255)                                        cGTAAAAAAAACCCTTACAACAAATATGTAAGGGCGCGATTGCACGTTACCACCAAACTTAAACATAATCATAAGATAATGTTCACTCTATTAATGATACGTTCATTAATAAACGTAGTACATGTTAGTTATAAAGGTGTa                                                                                                       >  2:685224/1‑141 (MQ=255)                                          tAAAAAAAACCCTTACAACAAATATGTAAGGGCGCGATTGCACGTTACCACCAAACTTAAACATAATCATAAGATAATGTTCACTCTATTAATGATACGTTCATTAATAAACGTAGGACATGTTAGTTATAAAGGTGTAtt                                                                                                     <  2:1082536/141‑1 (MQ=255)                                          tAAAAAAAACCCTTACAACAAATATGTAAGGGCGCGATTGCACGTTACCACCAAACTTAAACATAATCATAAGATAATGTTCACTCTATTAATGATACGTTCATTAATAAACGTAGGACATGTTAGTTATAAAGGTGTAtt                                                                                                     <  2:938912/141‑1 (MQ=255)                                          tAAAAAAAACCCTTACAACAAATATGTAAGGGCGCGATTGCACGTTACCACCAAACTTAAACATAATCATAAGATAATGTTCACTCTATTAATGATACGTTCATTAATAAACGTAGGACATGTTAGTTATAAAGGTGTAtt                                                                                                     >  1:841488/1‑141 (MQ=255)                                          tAAAAAAAACCCTTACAACAAATATGTAAGGGCGCGATTGCACGTTACCACCAAACTTAAACATAATCATAAGATAATGTTCACTCTATTAATGATACGTTCATTAATAAACGTAGGACATGTTAGTTATAAAGGTGTAtt                                                                                                     <  1:126974/141‑1 (MQ=255)                                           aaaaaaaaCCCTTACAACAAATATGTAAGGGCGCGATTGCACGTTACCACCAAACTTAAACATAATCATAAGATAATGTTCACTCTATTAATGATACGTTCATTAATAAACGTAGGACATGTTAGTTATAAAGGTGTATTc                                                                                                    >  1:383136/1‑141 (MQ=255)                                            aaaaaaaCCCTTACAACAAATATGTAAGGGCGCGATTGCACGTTACCACCAAACTTAAACATAATCATAAGATAATGTTCACTCTATTAATGA‑ACGTatcattaatagagtgaacattatcttatgattatgtttaagttt                                                                                                  >  1:456620‑M2/1‑97 (MQ=255)                                              aaaaaCCCTTACAACAAATATGTAAGGGCGCGATTGCACGTTACCACCAAACTTAAACATAATCATAAGATAATGTTCACTCTATTAATGATACGTTCATTAATAAACGTAGGACATGTTAGTTATAAAGGTGTATTCata                                                                                                 >  1:440378/1‑141 (MQ=255)                                                    ccTTACAACAAATATGTAAGGGCGCGATTGCACGTTACCACCAAACTTAAACATAATCATAAGATAATGTTCACTCTATTAATGATACGTTCATTAATAAACGTAGGACATGTTAGTTATAAAGGTGTATTCATAttatta                                                                                           <  1:968034/141‑1 (MQ=255)                                                      ttACAACAAATATGTAAGGGCGCGATTGCACGTTACCACCAAACTTAAACATAATCATAAGATAATGTTCACTCTATTAATGA‑ACGTatcattaatagagtgaacattatcttatgattatgtttaagtttggtggtaacg                                                                                        >  2:998841‑M2/1‑87 (MQ=255)                                                       tACAACAAATATGTAAGGGCGCGATTGCACGTTACCACCAAACTTAAACATAATCATAAGATAATGTTCACTCTATTAATGATACGTTCATTAATAAACGTAGGACATGTTAGTTATAAAGGTGTATTCATATTATTaaaa                                                                                        <  1:26888/141‑1 (MQ=255)                                                       tACAACAAATATGTAAGGGCGCGAGTGCACGTTACCACCAAACTTAAACATAATCATAAGATAATGTTCACTCTATTAATGATACGTTCATTAATAAACGTAGGACATGTTAGTTATAAAGGTGTATTCATATTATTaaaa                                                                                        <  1:679277/141‑1 (MQ=255)                                                         caacaaATATGTAAGGGCGCGATTGCACGTTACCACCAAACTTAAACATAATCATAAGATAATGTTCACTCTATTAATGATACGTTCATTAATAAACGTAGGACATGTTAGTTATAAAGGTGTATTCATATTATTAAAAac                                                                                      <  2:46303/141‑1 (MQ=255)                                                          aacaaATATGTAAGGGCGCGATTGCACGTTACCACCAAACTTAAACATAATCATAAGATAATGTTCACTCTATTAATGATACGTTCATTAATAAACGTAGGACATGTTAGTTATAAAGGTGTATTCATATTATTAAAAaca                                                                                     <  2:589072/141‑1 (MQ=255)                                                           tatttgttGTAAGGGCGCGATTGCACGTTACCACCAAACTTAAACATAATCATAAGATAATGTTCACTCTATTAATGATACGTTCATTAATAAACGTAGGACATGTTAGTTATAAAGGTGTATTCATATTATTAAAAacac                                                                                    >  1:759460/8‑141 (MQ=255)                                                             aaaTATGTAAGGGCGCGATTGCACGTTACCACCAAACTTAAACATAATCATAAGATAATGTTCACTCTATTAATGATACGTTCATTAATAAACGTAGGACATGTTAGTTATAAAGGTGTATTCATATTATTAAAAACACTa                                                                                  <  2:701760/141‑1 (MQ=255)                                                             aaaTATGTAAGGGCGCGATTGCACGTTACCACCAAACTTAAACATAATCATAAGATAATGTTCACTCTATTAATGATACGTTCATTAATAAACGTAGGACATGTTAGTTATAAAGGTGTATTCATATTATTAAAAACACTa                                                                                  <  2:345684/141‑1 (MQ=255)                                                               atatGTAAGGGCGCGATTGCACGTTACCACCAAACTTAAACATAATCATAAGATAATGTTCACTCTATTAATGATACGTTCATTAATAAACGTAGGACATGTTAGTTATAAAGGTGTATTCATATTATTAAAAACACTAGt                                                                                >  1:1002869/1‑141 (MQ=255)                                                                tatGTAAGGGCGCGATTGCACGTTACCACCAAACTTAAACATAATCATAAGATAATGTTCACTCTATTAATGATACGTTCATTAATAAACGTAGGACATGTTAGTTATAAAGGTGTATTCATATTATTAAAAACACTAGtt                                                                               <  2:1047830/141‑1 (MQ=255)                                                                         gcgcGATTGCACGTTACCGCCAAATATAAACATAATCATAAGATAATGTTCACTCTATTAATGATACGTTCATTAATAAACGTAGGACACGTTCGGTATAAATGTGTATTCCTATTATTAAAAA‑ACTAGTTCACAGCGAcc                                                                     <  2:101793/141‑1 (MQ=255)                                                                            cgATTGCACGTTACCACCAAACTTAAACAAAATCATAAGATAATGTTCACTCTATTAATGATACGTTCATTAATAAACGTAGGACATGTTAGTTATAAAGGTGTATTCATATTATTAAAAACACTAGTTCACAGCGACCAc                                                                   <  1:56295/141‑1 (MQ=255)                                                                               ttGCACGTTACCACCAAACTTAAACATAATCATAAGATAATGTTCACTCTATTAATGAGACAATCTTGATTAGGCGTTGGTGTTGTAAGTTATATGGGTGTATGCATATGATTAAAAACACGAGTTCACGGCGACCACTAg                                                                >  1:376970/1‑141 (MQ=255)                                                                                tGCACGTTACCACCAAACTTAAACATAATCATAAGATAATGTTCACTCTATTAATGATACTTTCATTAATAAACGTAGGACATGTTAGTTATAAAGGTGTATTCATATTATTAAAAACACTAGTTCACAGCGACCACTAGc                                                               <  1:293022/141‑1 (MQ=255)                                                                                    cGTTACCACCAAACTTAAACATAATCATAAGATAATGTTCACTCTATTAATGATACGTTCATTAATAAACGTAGGACATGTTAGTTATAAAGGTGTATTCATATTATTAAAAACACTAGTTCACAGCGACCACTAGctctc                                                           >  2:567320/1‑141 (MQ=255)                                                                                        accaccAAACTTAAACATAATCATAAGATAATGTTCACTCTATTAATGATACGTTCATTAATAAACGTAGGACATGTTAGTTATAAAGGTGTATTCATATTATTAAAAACACTAGTTCACAGCGACCACTAGCTCTCtgat                                                       <  1:475864/141‑1 (MQ=255)                                                                                          caccaAACTTAAACATAATCATAAGATAATGTTCACTCTATTAATGATACGTTCATTAATAAACGTAGGACATGTTAGTTATAAAGGTGTATTCATATTATTAAAAACACTAGTTCACAGCGACCACTAGCTCTCtgatga                                                     <  1:723314/141‑1 (MQ=255)                                                                                          caccaAACTTAAACATAATCATAAGATAATGTTCACTCTATTAATGATACGTTCATTAATAAACGTAGGACATGTTAGTTATAAAGGTGTATTCATATTATTAAAAACACTAGTTCACAGCGACCACTAGCTCTCtgatga                                                     >  2:607070/1‑141 (MQ=255)                                                                                             caAACTTAAACATAATCATAAGATAATGTTCACTCTATTAATGATACGTTCATTAATAAACGTAGGACATGTTAGTTATAAAGGTGTATTCATATTATTAAAAACACTAGTTCACAGCGACCACTAGCTCTCTGATGAttt                                                  <  1:439390/141‑1 (MQ=255)                                                                                                  ttAAACATAATCATAAGATAATGTTCACTCTATTAATGATACGTTCATTAATAAACGTAGGACATGTTAGTTATAAAGGTGTATTCATATTATTAAAAACACTAGTTCACAGCGACCACTAGCTCTCTGATGATTTCAaat                                             <  2:366177/141‑1 (MQ=255)                                                                                                    aaaCATAATCATAAGATAATGTTCACTCTATTAATGATACGTTCATTAATAAACGTAGGACATGTTAGTTATAAAGGTGTATTCATATTATTAAAAACACTAGTTCACAGCGACCACTAGCTCTCTGATGATTTCAaataa                                           >  2:251539/1‑141 (MQ=255)                                                                                                     aaCATAATCATAAGATAATGTTCACTCTATTAATGATACGTTAATTAATAAACGTAGGACATGTTAGTTATAAAGGTGTATTCATATTATTAAAAACACTAGTTCACAGCGACCACTAGCTCTCTGATGATTTCAaataat                                          >  2:1053874/1‑141 (MQ=255)                                                                                                           aTCATAAGATAATGTTCACTCTATTAATGATACGTTCATTAATAAACGTAGGACATGTTAGTTATAAAGGTGTATTCATATTATTAAAAACACTAGTTCACAGCGACCACTAGCTCTCTGATGATTTCAAATAATATTACt                                    >  2:747013/1‑141 (MQ=255)                                                                                                           aTCATAAGATAATGTTCACTCTATTAATGATACGTTCATTAATAAACGTAGGACATGTTAGTTATAAAGGTGTATTCATATTATTAAAAACACTAGTTCACAGCGACCACTAGCTCTCTGATGATTTCAAATAATATTACt                                    >  1:92027/1‑141 (MQ=255)                                                                                                           aTCATAAGATAATGTTCACTCTATTAATGATACGTTCATTAATAAACGTAGGACATGTTAGTTATAAAGGTGTATTCATATTATTAAAAACACTAGTTCACAGCGACCACTAGCTCTCTGATGATTTCAAATAATATTACt                                    >  1:91937/1‑141 (MQ=255)                                                                                                             cATAAGATAATGTTCACTCTATTAATGATACGTTCATTAATAAACGTAGGACATGTTAGTTATAAAGGTGTATTCATATTATTAAAAACACTAGTTCACAGCGACCACTAGCTCTCTGATGATTTCAAATAATATTACTTg                                  >  2:366130/1‑141 (MQ=255)                                                                                                             cATAAGATAATGTTCACTCTATTAATGATACGTTCATTAATAAACGTAGGACATGTTAGTTATAAAGGTGTATTCATATTATTAAAAACACTAGTTCACAGCGACCACTAGCTCTCTGATGATTTCAAATAATATTACTTg                                  >  1:129277/1‑141 (MQ=255)                                                                                                                 aGATAATGTTCACTCTATTAATGATACGTTCATTAATAAACGTAGGACATGTTAGTTATAAAGGTGTATTCATATTATTAAAAACACTAGTTCACAGCGACCACTAGCTCTCTGATGATTTCAAATAATATTACTTGTCCt                              <  1:598173/141‑1 (MQ=255)                                                                                                                      aTGTTCACTCTATTAATGATACGTTCATTAATAAACGTAGGACATGTTAGTTATAAAGGTGTATTCATATTATTAAAAACACTAGTTCACAGCGACCACTAGCTCTCTGATGATTTCAAATAATATTACTTGTCCTTTTAt                         <  2:624951/141‑1 (MQ=255)                                                                                                                       tGTTCACTCTATTAATGATACGTTCATTAATAAACGTAGGACATGTTAGTTATAAAGGTGTATTCATATTATTAAAAACACTAGTTCACAGCGACCACTAGCTATCTGATGATTTCAAATAATATTACTTGTCCTTTTATc                        >  1:830928/1‑141 (MQ=255)                                                                                                                        gTTCACTCTATTAATGATACGTTCATTAATAAACGTAGGACATGTTAGTTATAAAGGTGTATTCATATTATTAAAAACACTAGTTCACAGCGACCACTAGCTCTCTGATGATTTCAAATAATATTACTTGTCATTTTATcc                       <  1:1043625/141‑1 (MQ=255)                                                                                                                          tCACTCTATTAATGATACGTTCATTAATAAACGTAGGACATGTTAGTTATAAAGGTGTATTCATATTATTAAAAACACTAGTTCACAGCGACCACTAGCTCTCTGATGATTTCAAATAATATTACTTGTCCTTTTATCCTa                     <  2:689038/141‑1 (MQ=255)                                                                                                                                  ttAATGATACGTTCATTAATAAACGTAGGACATGTTAGTTATAAAGGTGTATTCATATTATTAAAAACACTAGTTCACAGCGACCACTAGCTCTCTGATGATTTCAAATAATATTACTTGTCCTTTTATCCTATTCTTTAt             <  1:234347/141‑1 (MQ=255)                                                                                                                                  ttAATGATACGTTCATTAATAAACGTAGGACATGTTAGTTATAAAGGTGTATTCATATTATTAAAAACACTAGTTCACAGCGACCACTAGCTCTCTGATGATTTCAAATAATATTACTTGTCCTTTTATCCTATTCTTTAt             <  1:1001160/141‑1 (MQ=255)                                                                                                                                  ttAATGATACGTTCATTAATAAACGTAGGACATGTTAGTTATAAAGGTGTATTCATATTATTAAAAACACTAGTTCACAGCGACCACTAGCTCTCTGATGATTTCAAATAATATTACTTGTCCTTTTATCCTATTCTTTAt             >  1:579468/1‑141 (MQ=255)                                                                                                                                   tAATGATACGTTCATTAATAAACGTAGGACATGTTAGTTATAAAGGTGTATTCATATTATTAAAAACACTAGTTCACAGCGACCACTAGCTCTCTGATGATTTCAAATAATATTACTTGTCCTTTTATCCTATTCTTTATg            <  2:1074187/141‑1 (MQ=255)                                                                                                                                    aaTGATACGTTCATTAATAAACGTAGGACATGTTAGTTATAAAGGTGTATTCATATTATTAAAAACACTAGTTCACAGCGACCACTAGCTCTCTGATGATTTCAAATAATATTACTTGTCCTTTTATCCTATTCTTTATGc           <  2:614778/141‑1 (MQ=255)                                                                                                                                      tGATACGTTCATTAATAAACGTAGGACATGTTAGTTATAAAGGTGTATTCATATTATTAAAAACACTAGTTCACAGCGACCACTAGCTCTCTGATGATTTCAAATAATATTACTTGTCCTTTTATCCTATTCTTTATGCac         >  1:944329/1‑140 (MQ=255)                                                                                                                                      tGATACGTTCATTAATAAACGTAGGACATGTTAGTTATAAAGGTGTATTCATATTATTAAAAACACTAGTTCACAGCGACCACTAGCTCTCTGATGATTTCAAATAATATTACTTGTCCTTTTATCCTATTCTTTATGCAt         >  2:449343/1‑141 (MQ=255)                                                                                                                                       gATACGTtcattaatagagtgaacattatcttatgattatgtttaagtttggtggtaacgtgcaatcgcgcccttacatatttgttgtaagggttttttttacgttcaaaaaactttaaagtattttaacaagtattcaat        <  2:15761‑M2/141‑135 (MQ=255)                                                                                                                                          aCGTTCATTAATAAACGTAGGACATGTTAGTTATAAAGGTGTATTCATATTATTAAAAACACTAGTTCACAGCGACCACTAGCTCTCTGATGATTTCAAATAATATTACTTGTCCTTTTATCCTATTCTTTATGCATTTTc     >  2:1060008/1‑141 (MQ=255)                                                                                                                                            gTTCATTAATAAACGTAGGACATGTTAGTTATAAAGGTGTATTCATATTATTAAAAACACTAGTTCACAGCGACCACTAGCTCTCTGATGATTTCAAATAATATTACTTGTCCTTTTATCCTATTCTTTATGCATTTTccc   <  1:502413/141‑1 (MQ=255)                                                                                                                                             ttCATTAATAAACGTAGGACATGTTAGTTATAAAGGTGTATTCATATTATTAAAAACACTAGTTCACAGCGACCACTAGCTCTCTGATGATTTCAAATAATATTACTTGTCCTTTTATCCTATTCTTTATGCATTTTCCCt  >  2:138055/1‑141 (MQ=255)                                                                                                                                             |                                                                                                                                             TTATTGAATACTTGTTAAAATACTTTAAAGTTTTTTGAACGTAAAAAAAACCCTTACAACAAATATGTAAGGGCGCGATTGCACGTTACCACCAAACTTAAACATAATCATAAGATAATGTTCACTCTATTAATGATACGTTCATTAATAAACGTAGGACATGTTAGTTATAAAGGTGTATTCATATTATTAAAAACACTAGTTCACAGCGACCACTAGCTCTCTGATGATTTCAAATAATATTACTTGTCCTTTTATCCTATTCTTTATGCATTTTCCCT  >  CP000730/1843343‑1843623

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.