Predicted mutation
evidence	seq id	position	mutation	freq	annotation	gene	description
RA	CP000730	1,299,677	C→T	7.3%	G446G (GGC→GGT)	rnjB →	beta‑lactamase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	CP000730	1,299,677	0	C	T	7.3%	288.6 / 8.2	95	G446G (GGC→GGT)	rnjB	beta‑lactamase
Reads supporting (aligned to +/- strand):  ref base C (50/38);  new base T (5/2);  total (55/40)
Fisher's exact test for biased strand distribution p-value = 6.95e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.88e-01

GCACATGCGAAGCTAGCAGCTGAAGCAGGTGTTGCACCAGAAAAGATTTTCCTTGTGGAAAAAGGAGATGTCATTAATTACAACGGTAAAGATATGATATTAAATGAAAAGGTAAATTCAGGAAATATTTTAATAGATGGCATTGGTATTGGGGATGTAGGAAATATCGTGTTGAGAGACCGTCATCTTTTAGCAGAAGATGGTATCTTTATTGCTGTTGTAACGTTAGATCCTAAAAATAGACGTATAGCTGCGGGACCTGAAATTCAATCTCGTG  >  CP000730/1299537‑1299813                                                                                                                                             |                                                                                                                                         gCACATGCGAAGCTAGCAGCTGAAGCAGGTGTTGCACCAGAAAAGATTTTCCTTGTGGAAAAAGGAGATGTCATTAATTACAACGGTAAAGATATGATATTAAATGAAAAGGTAAATTCAGGAAATATTTTAATAGATGGc                                                                                                                                          >  1:700521/1‑141 (MQ=255)   acaTGCGAAGCTAGCAGCTGAAGCAGGTGTTGCACCAGAAAAGATTTTCCTTGTGGAAAAAGGAGATGTCATTAATTACAACGGTAAAGATATGATATTAAATGAAAAGGTAAATTCAGGAAATATTTTAATAGATGGCAt                                                                                                                                        <  1:249396/141‑1 (MQ=255)      agCGAAGCTAGCAGCTGAAGCAGGTGTTGCACCAGAAAAGATTTAAAAAAAAAAAAAAGGAGATGTCATTAATTACAACGGTAAAGATATGATATTAAATGAAAAGGTAAATTCAGGAAATATTTTAATAGATGGCATTgg                                                                                                                                     <  2:967494/140‑1 (MQ=255)           aGCTAGCAGCTGAAGCAGGTGTTGCACCAGAAAAGATTTTCCTTGTGGAAAAAGGAGATGTCATTAATTACAACGGTAAAGATATGATATTAAATGAAAAGGTAAATTCAGGAAATATTTTAATAGATGGCATTGGTATTg                                                                                                                                >  2:579346/1‑141 (MQ=255)           aGCTAGCAGCTGAAGCAGGTGTTGCACCAGAAAAGATTTTCCTTGTGGAAAAAGGAGATGTCATTAATTACAACGGTAAAGATATGATATTAAATGAAAAGGTAAATTCAGGAAATATTTTAATAGATGGCATTGGTATTg                                                                                                                                >  1:1074644/1‑141 (MQ=255)            gCTAGCAGCTGAAGCAGGTGTTGCACCAGAAAAGATTTTCCTTGTGGAAAAAGGAGATGTCATTAATTACAACGGTAAAGATATGATATTAAATGAAAAGGTAAATTCAGGAAATATTTTAATAGATGGCATTGGTATTgg                                                                                                                               >  2:821044/1‑141 (MQ=255)                 cagcTGAAGCAGGTGTTGCATCGGAAAAGATTTTCCTTGTGGAAAAAGGAGATGTCATTAATTACAACGGTAAAGATATGGTATTATGTTAATGGGTTAGGTCGTGAAATATTTTAATAGATGGTATTGGTATTGGGGATg                                                                                                                          <  2:762686/141‑1 (MQ=255)                   gcTGAAGCAGGTGTTGCACCAGAAAAGATTTTCCTTGTGGAAAAAGGAGATGTCATTAATTACAACGGTAAAGATATGATATTAAATGAAAAGGTAAATTCAGGAAATATTTTAATAGATGGCATTGGTATTGGGGATGTa                                                                                                                        <  1:755295/141‑1 (MQ=255)                   gcTGAAGCAGGTGTTGCACCAGAAAAGATGTTCCTTGTGGAAAAAGGAGATGTCATTAATCACAACGGTAAAGATATGATATTAACTGAAAAGGTAAATTAAGGAACCATTTTAATAGATGGCATTGGGATTGGGGAGGtc                                                                                                                        >  2:454113/1‑140 (MQ=255)                     tGAAGCAGGTGTTGCACCAGAAAAGATTTTCCTTGTGGAAAAAGGAGATGTCATTAATTACAACGGTAAAGATATGATATTAAATGAAAAGGTAAATTCAGGAAATATTTTAATAGATGGCATTGGTATTGGGGATGTAgg                                                                                                                      <  1:435858/141‑1 (MQ=255)                     tGAAGCAGGTGTTGCACCAGAAAAGATTTTCCTTGTGGAAAAAGGAGATGTCATTAATTACAACGGTAAAGATATGATATTAAATGAAAAGGTAAATTCAGGAAATATTTTAATAGATGGCATTGGTATTGGGGATGTAgg                                                                                                                      <  2:928330/141‑1 (MQ=255)                      gAAGCAGGTGTTGCACCAGAAAAGATTTTCCTTGTGGAAAAAGGAGATGTCATTAATTACAACGGTAAAGATATGATATTAAATGAAAAGGTAAATTCAGGAAATATTTTAATAGATGGCATTGGTATTGGGGATGTAGGa                                                                                                                     <  1:343607/141‑1 (MQ=255)                      gAAGCAGGTGTTGCACCAGAAAAGATTTTCCTTGTGGAAAAAGGAGATGTCATTAATTACAACGGTAAAGATATGATATTAAATGAAAAGGTAAATTCAGGAAATATTTTAATAGATGGCATTGGTATTGGGGATGTAGGa                                                                                                                     <  2:375027/141‑1 (MQ=255)                       aaGCAGGTGTTGCACCAGAAAAGATTTTCCTTGTGG‑AAAAGGAGATGTCATTAATTACAACGGTAAAGATATGATATTAAATGAAAAGGTAAATTCAGGAAATATTTTAATAGATGGCATTGGTATTGGGGATGTAGGaaa                                                                                                                   <  1:168887/141‑1 (MQ=255)                        aGCAGGTGTTGCACCAGAAAAGATTTTCCTTGTGGAAAAAGGAGATGTCATTAATTACAACGGTAAAGATATGATATTAAATGAAAAGGTAAATTCAGGAAATATTTTAATAGATGGCATTGGTATTGGGGATGTAGGaaa                                                                                                                   <  2:987275/141‑1 (MQ=255)                          cAGGTGTTGCACCAGAAAAGATTTTCCTTGTGGAAAAAGGAGATGTCATTAATTACAACGGTAAAGATATGATATTAAATGAAAAGGTAAATTCAGGAAATATTTTAATAGATGGCATTGGTATTGGGGATGTAGGAAata                                                                                                                 <  1:240824/141‑1 (MQ=255)                          cAGGTGTTGCACCAGAAAAGATTTTCCTTGTGGAAAAAGGAGATGTCATTAATTACAACGGTAAAGATATGATATTAAATGAAAAGGTAAATTCAGGAAATATTTTAATAGATGGCATTGGTATTGGGGATGTAGGAAata                                                                                                                 <  1:251271/141‑1 (MQ=255)                          cAGGTGTTGCACCAGAAAAGATTTTCCTTGTGGAAAAAGGAGATGTCATTAATTACAACGGTAAAGATATGATATTAAATGAAAAGGTAAATTCAGGAAATATTTTAATAGATGGCATTGGTATTGGGGATGTAGGAAata                                                                                                                 >  2:326504/1‑141 (MQ=255)                            ggTGTTGCACCAGAAAAGATTTTCCTTGTGGAAAAAGGAGATGTCATTAATTACAACGGTAAAGATATGATATTAAATGAAAAGGTAAATTCAGGAAATATTTTAATAGATGGCATTGGTATTGGGGATGTAGGAAATATc                                                                                                               >  1:479044/1‑141 (MQ=255)                            ggTGTTGCACCAGAAAAGATTTTCCTTGTGGAAAAAGGAGATGTCATTAATTACAACGGTAAAGATATAATATTAAATGAAAAGGTAAATTCAGGAAATATTTTAATAGATGGCATTGGTATTGGGGATGTAGGAAATATc                                                                                                               <  2:944211/141‑1 (MQ=255)                                ttGCACCAGAAAAGATTTTCCTTGTGGAAAAAGGAGATGTCATTAATTACAACGGTAAAGATATGATATTAAATGAAAAGGTAAATTCAGGAAATATTTTAATAGATGGCATTGGTATTGGGGATGTAGGAAATATCgtgt                                                                                                           <  2:275349/141‑1 (MQ=255)                                 tGCACCAGAAAAGATTTTCCTTGTGGAAAAAGGAGATGTCATTAATTACAACGGTAAAGATATGATATTAAATGAAAAGGTAAATTCAGGAAATATTTTAATAGATGGCATTGGTATTGGGGATGTAGGAAATATCGTGtt                                                                                                          <  1:950001/141‑1 (MQ=255)                                  gCACCAGAAAAGATTTTCCTTGTGGAAAAAGGAGATGTCATTAATTACAACGGTAAAGATATGATATTAAATGAAAAGGTAAATTCAGGAAATATTTTAATAGATGGCATTGGTATTGGGGATGTAGGAAATATCGTGTTg                                                                                                         >  2:183445/1‑141 (MQ=255)                                  gCACCAGAAAAGATTTTCCTTGTGGAAAAAGGAGATGTCATTAATTACAACGGTAAAGATATGATATTAAATGAAAAGGTAAATTCAGGAAATATTTTAATAGATGGCATTGGTATTGGGGATGTAGGAAATATCGTGTTg                                                                                                         >  2:847938/1‑141 (MQ=255)                                   cACCAGAAAAGATTTTCCTTGTGGAAAAAGGAGATGTCATTAATTACAACGGTAAAGATATGATATTAAATGAAAAGGTAAATTCATGAAATATTTTAATAGATGGCATTGGTATTGGGGATGTAGGAAATATCGTGTTga                                                                                                        <  1:20584/141‑1 (MQ=255)                                     ccAGAAAAGATTTTCCTTGTGGAAAAAGGAGATGTCATTAATTACAACGGTAAAGATATGATATTAAATGAAAAGGTAAATTCAGGAAATATTTTAATAGATGGCATTGGTATTGGGGATGTAGGAAATATCGTGTTgaga                                                                                                      <  1:345776/141‑1 (MQ=255)                                        gAAAAGATTTTCCTTGTGGAAAAAGGAGATGTCATTAATTACAACGGTAAAGATATGATATTAAATGAAAAGGTAAATTCAGGAAATATTTTAATAGATGGCATTGGTATTGGGGATGTAGGAAATATCGTGTTGAGAGAc                                                                                                   >  2:995339/1‑141 (MQ=255)                                         aaaaGGTTTTCCTTGTGGAAAAAGGAGATGTCATTAATTACAACGGTAAAGATATGATATTAAATGAAAAGGTAAATTCAGGAAATATTTTAATAGATGGCATTGGTATTGGGGATGTAGGAAATATCGTGTTGAGAGAcc                                                                                                  <  2:1004069/141‑1 (MQ=255)                                         aaaaGATTTTCCTTGTGGAAAAAGGAGATGTCATTAATTACAACGGTAAAGATATGATATTAAATGAAAAGGTAAATTCAGGAAATATTTTAATAGATGGCATTGGTATTGGGGATGTAGGAAATATCGTGTTGAGAGAcc                                                                                                  <  1:497762/141‑1 (MQ=255)                                         aaaaGATTTTCCTTGTGGAAAAAGGAGATGTCATTAATTACAACGGTAAAGATATGATATTAAATGAAAAGGTAAATTCAGGAAATATTTTAATAGATGGCATTGGTATTGGGGATGTAGGAAATATCGTGTTGAGAGAcc                                                                                                  <  1:547642/141‑1 (MQ=255)                                          aaaGATTTTCCTTGTGGAAAAAGGAGATGTCATTAATTACAACGGTAAAGATATGATATTAAATGAAAAGGTAAATTCAGGAAATATTTTAATAGATGGCATTGGTATTGGGGATGTAGGAAATATCGTGTTGAGAGACCg                                                                                                 >  2:316157/1‑141 (MQ=255)                                             gATTTTCCTTGTGGAAAAAGGAGATGTCATTAATTACAACGGTAAAGATATGATATTAAATGAAAAGGTAAATTCAGGAAATATTTTAATAGATGGCATTGGTATTGGGGATGTAGGAAATATCGTGTTGAGAGACCGTCa                                                                                              >  2:952235/1‑141 (MQ=255)                                             gATTTTCCTTGTGGAAAAAGGAGATGTCATTAATTACAACGGTAAAGATATGATATTAAATGAAAAGGTAAATTCAGGAAATATTTTAATAGATGGCATTGGTATTGGGGATGTAGGAAATATCGTGTTGAGAGACCGTCa                                                                                              >  1:849823/1‑141 (MQ=255)                                               ttttCCTTGTGGAAAAAGGAGATGTCATTAATTACAACGGTAAAGATATGATATTAAATGAAAAGGTAAATTCAGGAAATATTTTAATAGATGGCATTGGTATTGGGGATGTAGGAAAAAAAAAGTTGAGAGACCGTCATc                                                                                            >  1:283193/1‑141 (MQ=255)                                               ttttCCTTGTGGAAAAAGGAGATGTCATTAATTACAACGGTAAAGATATGATATTAAATGAAAAGGTAAATTCAGGAAATATTTTAATAGATGGCATCGGTATTGGGGATGTAGGACATTGGCGGCTGAGAGACCGTCATc                                                                                            >  1:283324/1‑141 (MQ=255)                                                tttCCTTGTGGAAAAAGGAGATGTCATTAATTACAACGGTAAAGATATGATATTAAATGAAAAGGTAAATTCAGGAAATATTTTAATAGATGGCATTGGTATTGGGGATGTAGGAAATATCGTGTTGAGAGACCGTCATCt                                                                                           >  2:758328/1‑141 (MQ=255)                                                tttCCTTGTGGAAAAAGGAGATGTCATTAATTACAACGGTAAAGATATGATATTAAATGAAAAGGTAAATTCAGGAAATATTTTAATAGATGGCATTGGTATTGGGGATGTAGGAAATATCGTGTTGAGAGACCGTCATCt                                                                                           >  1:82278/1‑141 (MQ=255)                                                  tccacaaggAAAAAGGAGATGTCATTAATTACAACGGTAAAGATATGATATTAAATGAAAAGGTAAATTCAGGAAATATTTTAATAGATGGCATTGGTATTGGGGATGTAGGAAATCTCGTGTTGAGAGACCGTCATCttt                                                                                         >  2:182444/8‑141 (MQ=255)                                                  tccacaaggAAAAAGGAGATGTCATTAATTACAACGGTAAAGATATGATATTAAATGAAAAGGTAAATTCAGGAAATATTTTAATAGATGGCATTGGTATTGGGGATGTAGGAAATATCGTGTTGAGAGACCGTCATCttt                                                                                         >  2:283423/8‑141 (MQ=255)                                                   ccTTGTGGAAAAAGGAGATGTCATTAATTACAACGGTAAAGATATGATATTAAATGAAAAGGTAAATTCAGGAAATATTTTAATAGATGGCATTGGTATTGGGGATGTAGGAAATATCGTGTTGAGAGACCGTCATCtttt                                                                                        <  1:321781/141‑1 (MQ=255)                                                       gtgGAAAAAGGAGATGTCATTAATTACAACGGTAAAGATATGATATTAAATGAAAAGGTAAATTCAGGAAATATTTTAATAGATGGCGTTGGTATTGGGGATGTAGGAAATATCGTGTTGAGAGACCGTCATCTTTTAGCa                                                                                    <  2:47609/141‑1 (MQ=255)                                                       gtgGAAAAAGGAGATGTCATTAATTACAACGGTAAAGATATGATATTAAATGAAAAGGTAAATTCAGGAAATATTTTAATAGATGGCATTGGTATTGGGGATGTAGGAAATATCGTGTTGAGAGACCGTCATCTTTTAGCa                                                                                    >  1:393376/1‑141 (MQ=255)                                                       gtgGAAAAAGGAGATGTCATTAATTACAACGGTAAAGATATGATATTAAATGAAAAGGTAAATTCAGGAAATATTTTAATAGATGGCATTGGTATTGGGGATGTAGGAAATATCGTGTTGAGAGACCGTCATCTTTTAGCa                                                                                    <  2:47665/141‑1 (MQ=255)                                                        tgGAAAAAGGAGATGTCATTAATTACAACGGTAAAGATATGATATTAAATGAAAAGGTAAATTCAGGAAATATTTTAATAGATGGCATTGGTATTGGGGATGTAGGAAATATCGTGTTGAGAGACCGTCATCTTTTAGCag                                                                                   >  2:1054718/1‑141 (MQ=255)                                                            aaaaGGAGATGTCATTAATTACAACGGTAAAGATATGATATTAAATGAAAATGTAAATTCAGGAAATATTTTAATAGATGGCATTGGTATTGGGGATGTAGGAAATATCGTGTTGAGAGACCGTCATCTTTTAGCagaaga                                                                               <  1:704185/141‑1 (MQ=255)                                                              ttttttttttCATTAATTACAACGGTAAAGATATGATATTAAATGAAAAGGTAAATTCAGGAAATATTTTAATAGATGTCATTTTTATTGTGGATGTAGGAAATATCGTGTTGAGAGACCGTCATCTTTTAGCAGAAGATg                                                                             >  2:443503/10‑141 (MQ=255)                                                              aaGGAGATGTCATTAATTACAACGGTAAAGATATGATATTAAATGAAAAGGTAAATTCAGGAAATATTTTAATAGATGGCATTGGTATTGGGGATGTAGGAAATATCGTGTTGAGAGACCGTCATCTTTTAGCAGAAGATg                                                                             >  2:52182/1‑141 (MQ=255)                                                              aaGGAGATGTCATTAATTACAACGGTAAAGATATGATATTAAATGAAAAGGTAAATTCAGGAAATATTTTAATAGATGGCATTGGTATTGGGGATGTAGGAAATATCGTGTTGAGAGACCGTCATCTTTTAGCAGAAGATg                                                                             >  1:146511/1‑141 (MQ=255)                                                              aaGGAGATGTCATTAATTACAACGGTAAAGATATGATATTAAATGAAAAGGTAAATTCAGGAAATATTTTAATAGATGGCATTGGTATTGGGGATGTAGGAAATATCGTGTTGAGAGACCGTCATCTTTTAGCAGAAGATg                                                                             >  1:205148/1‑141 (MQ=255)                                                                 gagaTGTCATTAATTACAACGGTAAAGATATGATATTAAATGAAAAGGTAAATTCAGGAAATATTTTAATAGATGGCATTGGTATTGGGGATGTAGGAAATATCGTGTTGAGAGACCGTCATCTTTTAGCAGAAGATGGTa                                                                          <  2:79811/141‑1 (MQ=255)                                                                  agaTGTCATTAATTACAACGGTAAAGATATGATATTAAATGAAAAGGTAAATTCAGGAAATATTTTAATAGATGGCATTGGTATTGGGGATGTAGGAAATATCGTGTTGAGAGACCGTCATCTTTTAGCAGAAGATGGTAt                                                                         >  1:726652/1‑141 (MQ=255)                                                                   gaTGTCATTAATTACAACGGTAAAGATATGATATTAAATGAGAAGGTAAATTCAGGAAATATTTTAATAGATGGCATTGGTATCGGGGATGTAGGAAATATCGTGTTGAGAGACCGTCATCTTTTAGCAGTAGATGGTATc                                                                        <  2:995168/141‑1 (MQ=255)                                                                   gaTGTCATTAATTACAACGGTAAAGATATGATATTAAATGAAAAGGTAAATTCAGGAAATATTTTAATAGATGGCATTGGTATTGGGGATGTAGGAAATATCGTGTTGAGAGACCGTCATCTTTTAGCAGAAGATGGTATc                                                                        >  2:396865/1‑141 (MQ=255)                                                                   gaTGTCATTAATTACAACGGTAAAGATATGATATTAAATGAAAAGGTAAATTCAGGAAATATTTTAATAGATGGCATTGGTATTGGGGATGTAGGAAATATCGTGTTGAGAGACCGTCATCTTTTAGCAGAAGATGGTATc                                                                        <  1:500896/141‑1 (MQ=255)                                                                     tGTCATTAATTACAACGGTAAAGATATGATATTAAATGAAAAGGTAAATTCAGGAAATATTTTAATAGATGGCATTGGTATTGGGGATGTAGGAAATATCGTGTTGAGAGACCGTCATCTTTTAGCAGAAGATGGTATCtt                                                                      <  1:579346/141‑1 (MQ=255)                                                                      gTCATTAATTACAACGGTAAAGATATGATATTAAATGAAAAGGTAAATTCAGGAAATATTTTAATAGATGGCATTGGTATTGGGGATGTAGGAAATATCGTGTTGAGAGACCGTCATCTTTTAGCAGAAGATGGTATCttt                                                                     >  2:750410/1‑141 (MQ=255)                                                                      gTCATGAATTACAGCGGTAAAGATATGATATTAAATGAAAAGGTAAATTCAGGAAATATTTTAATAGATGGCATTGGTATTGGGGATGTAGGAAATATCGTGTTGAGAGACCGTCATCTTTTAGCAGAAGATGGTATCttt                                                                     <  2:909611/141‑1 (MQ=255)                                                                          ttaattaCAACGGTAAAGATATGATATTAAATGAAAAGGTAAATTCAGGAAATATTTTAATAGATGGCATTGGTATTGGGGATGTAGGAAATATCGTGTTGAGAGACCGTCATCTTTTAGCAGAAGATGGTATCTTTATTg                                                                 >  1:1034400/1‑141 (MQ=255)                                                                              ttaCAACGGTAAAGATATGATATTAAATGAAAAGGTAAATTCAGGAAATATTTTAATAGATGGCATTGGTATTGGGGATGTAGGAAATATCGTGTTGAGAGACCGTCATCTTTTAGCAGAAGATGGTATCTTTATTGCtgt                                                             >  1:136966/1‑141 (MQ=255)                                                                                aCAACGGTAAAGATATGATATTAAATGAAAAGGTAAATTCAGGAAATATTTTAATAGATGGCATTGGTATTGGGGATGTAGGAAATATCGTGTTGAGAGATCGTCATCTTTTAGCAGAAGATGGTATCTTTATTGCtgttg                                                           >  2:826742/1‑141 (MQ=255)                                                                                 cAACGGTAAAGATATGATATTAAATGAAAAGGTAAATTCAGGAAATATTTTAATAGATGGCATTGGTATTGGGGATGTAGGAAATATCGTGTTGAGAGACCGTCATCTTTTAGCAGAAGATGGTATCTTTATTGCtgttgt                                                          <  1:697861/141‑1 (MQ=255)                                                                                  aaCGGTAAAGATATGATATTAAATGAAAAGGTAAATTCAGGAAATATTTTAATAGATGGCATTGGTATTGGGGATGTAGGAAATATCGTGTTGAGAGACCGTCATCTTTTAGCAGAAGATGGTATCTTTATTGCTGTTGTa                                                         >  1:372266/1‑141 (MQ=255)                                                                                  aaCGGTAAAGATATGATATTAAATGAAAAGGTAAATTCAGGAAATATTTTAATAGATGGCATTGGTATTGGGGATGTAGGAAATATCGTGTTGAGAGACCGTCATCTTTTAGCAGAAGATGGTATCTTTATTGCTGTTGTa                                                         >  2:877971/1‑141 (MQ=255)                                                                                   aCGGTAAAGATATGATATTAAATGAAAAGGTAAATTCAGGAAATATTTTAATAGATGGCATTGGTATTGGGGATGTAGGAAATATCGTGTTGAGAGACCGTCATCTTTTAGCAGAAGATGGTATCTTTATTGCTGTTGTaa                                                        >  2:90156/1‑141 (MQ=255)                                                                                     ggTAAAGATATGATATTAAATGAAAAGGTAAATTCAGGAAATATTTTAATAGATGGCATTGGTATTGGGGATGTAGGAAATATCGTGTTGAGAGACCGTCATCTTTTAGCAGAAGATGGTATCTTTATTGCTGTTGTAACg                                                      <  2:302163/141‑1 (MQ=255)                                                                                      gTAAAGATATGATATTAAATGAAAAGGTAAATTCAGGAAATATTTTAATAGATGGCATTGGTATTGGGGATGTAGGAAATATCGTGTTGAGAGACCGTCATCTTTTAGCAGAAGATGGTATCTTTATTGCTGTTGTAACGt                                                     <  2:781333/141‑1 (MQ=255)                                                                                       tAAAGATATGATATTAAATGAAAAGGTAAATTCGGGAAATATTTTAATAGATGGTATTGGTATTGGGGATGTAGGAAATATCGTGTTGAGAGACCGTCATCTTTTAGCAGAAGATGGTATCTTTATTGCTGTAGTAACGtt                                                    <  1:695134/141‑1 (MQ=255)                                                                                       tAAAGATATGATATTAAATGAAAAGGTAAATTCAGGAAATATTTTAATAGATGGCATTGGTATTGGGGATGTAGGAAATATCGTGTTGAGAGACCGTCATCTTTTAGCAGAAGATGGTATCTTTATTGCTGTTGTAACGtt                                                    <  2:212844/141‑1 (MQ=255)                                                                                          aGATATGATATTAAATGAAAAGGTAAATTCGGGAAATATTTTAATAGATGGTATTGGTATTGGGGATGTAGGAAAGAGCGTGTGGATAGACCGGCATCTTTGAGCAGAAGATGGTATCGTTATTGCTGTAGTAACGTTAGa                                                 >  1:918826/1‑141 (MQ=255)                                                                                           gatatgatatTAAATGAAAAGGTAAATTCAGGAAATATTTTAATAGATGGCATTGGTATTGGGGATGTAGGAAATATCGTGTTGAGAGACCGTCATCTTTTAGCAGAAGATGGTATCTTTATTGCTGTTGTAACGTTAGAt                                                >  1:204329/1‑141 (MQ=255)                                                                                           gatatgatatTAAATGAAAAGGTAAATTCAGGAAATATTTTAATAGATGGCATTGGTATTGGGGATGTAGGAAATATCGTGTTGAGAGACCGTCATCTTTTAGCAGAAGATGGTATCTTTATTGCTGTTGTAACGTTAGAt                                                >  2:567149/1‑141 (MQ=255)                                                                                            atatgatatTAAATGAAAAGGTAAATTCAGGAAATATTTTAATAGATGGCATTGGTATTGGGGATGTAGGAAATATCGTGTTGAGAGACCGTCATCTTTTAGCAGAAGATGGTATCTTTATTGCTGTTGTAACGTTAGATc                                               <  2:259488/141‑1 (MQ=255)                                                                                                    ttAAATGAAAAGGTAAATTCGGGAAATATTTTAATAGATGGTATTGGTATTGGGGATGTAGGAAATATCGTGTTGAGAGACCGTCATCTTTTAGCAGAAGATGGTATCTTTATTGCTGTAGTAACGTTAGATCCTAAAAAt                                       >  2:53627/1‑141 (MQ=255)                                                                                                       aaTGAAAAGGTAAATTCAGGAAATATTTTAATAGATGGCATTGGTATTGGGGATGTAGGAAATATCGTGTTGAGAGACCGTCATCTTTTAGCAGAAGATGGTATCTTTATTGCTGTTGTAACGTTAGATCCTAAAAATAGa                                    >  2:718847/1‑141 (MQ=255)                                                                                                       aaTGAAAAGGTAAATTCAGGAAATATTTTAATAGATGGCATTGGTATTGGGGATGTAGGAAATATCGTGTTGAGAGACCGTCATCTTTTAGCAGAAGATGGTATCTTTATTGCTGTTGTAACGTTAGATCCTAAAAATAGa                                    >  1:467402/1‑141 (MQ=255)                                                                                                              aGGTAAATTCAGGAAATATTTTAATAGATGGCATTGGTATTGGGGATGTAGGAAATATCGTGTTGAGAGACCGTCATCTTTTAGCAGAAGATGGTATCTTTATTGCTGTTGTAACGTTAGATCCTAAAAATAGACGTATAg                             >  2:836729/1‑141 (MQ=255)                                                                                                               ggTAAATTCAGGAAATATTTTAATAGATGGCATTGGTATTGGGGATGTAGGAAATATCGTGTTGAGAGACCGTCATCTTTTAGCAGAAGATGGTATCTTTATTGCTGTTGTAACGTTAGATCCTAAAAATAGACGTATAGc                            >  1:922623/1‑141 (MQ=255)                                                                                                                   aaTTCAGGAAATATTTTAATAGATGGCATTGGTATTGGGGATGTAGGAAATATCGTGTTGAGAGACCGTCATCTTTTAGCAGAAGATGGTATCTTTATTGCTGTTGTAACGTTAGATCCTAAAAATAGACGTATAGCTGCg                        >  1:531378/1‑141 (MQ=255)                                                                                                                    aTTCAGGAAATATTTTAATAGATGGCATTGGTATTGGGGATGTAGGAAATATCGTGTTGAGAGACCGTCATCTTTTAGCAGAAGATGGTATCTTTATTGCTGTTGTAACGTTAGATCCTAAAAATAGACGTATAGCTGCgg                       >  1:120470/1‑141 (MQ=255)                                                                                                                       cgggAAATATTTTAATAGATGGTATTGGTATTGGGGATGTAGGAAATATCGTGTTGAGAGACCGTCATCTTTTAGCAGAAGATGGTATCTTTATTGCTGTAGTAACGTTAGATCCTAAAAATAGACGTATAGCTGCgggtc                    >  1:380867/3‑139 (MQ=255)                                                                                                                       cgggAAATATTTTAATAGATGGTATTGGTATTGGGGATGTAGGAAATATCGTGTTGAGAGACCGTCATCTTTTAGCAGAAGATGGTATCTTTATTGCTGTAGTAACGTTAGATCCTAAAAATAGACGTATAGCTGCgggtc                    >  1:380776/3‑139 (MQ=255)                                                                                                                       cAGGAAATATTTTAATAGATGGCATTGGTATTGGGGATGTAGGAAATATCGTGTTGAGAGACCGTCATCTTTTAGCAGAAGATGGTATCTTTATTGCTGTTGTAACGTTAGAACCTAAAAATAGACGTATAGCTGCGGGAc                    <  2:1085153/141‑1 (MQ=255)                                                                                                                         ggAAATATTTTAATAGATGGCATTGGTATTGGGGATGTAGGAAATATCGTGTTGAGAGACCGTCATCTTTTAGCAGAAGGTGGTTATTTTGTTGCTGTTGTAACGTTAGATCCTAAAAATAGACGTATAGCTGCGGGACCt                  >  1:613788/1‑141 (MQ=255)                                                                                                                         ggAAATATTTTAATAGATGGCATTGGTATTAGGGATGTAGGAAATATCGTGTTGAGAGACCGTCATCTTTTAGCAGAAGATGGTATCTTTATTGCTGTTGTAACGTTAGATCGTAAAAATCTACGTATAGCTGCGGGACCt                  >  2:728062/1‑141 (MQ=255)                                                                                                                            aaTATTTTAATAGATGGCATTGGTATTGGGGATGTAGGAAATATCGTGTTGAGAGACCGTCATCTTTTAGCAGAAGATGGTATCTTTATTGCTGTTGTAACGTTAGATCCTAAAAATAGACGTATAGCTGCGGGACCTGaa               >  2:4802/1‑141 (MQ=255)                                                                                                                              tatTTTAATAGATGGCATTGGTATTGGGGATGTAGGAAATATCGTGTTGAGAGACCGTCATCTTTTAGCAGAAGATGGTATCTTTATTGCTGTTGTAACGTTAGATCCTAAAAATAGACGTATAGCTGCGGGACCTGAAAt             >  2:635619/1‑141 (MQ=255)                                                                                                                               atTTTAATAGATGGCATTGGTATTGGGGATGTAGGAAATATCGTGTTGAGAGACCGTCATCTTTTAGCAGAAGATGGTATCTTTATTGCTGTTGTAACGTTAGATCCTAAAAATAGACGTATAGCTGCGGGACCTGAAAtt            >  1:276939/1‑141 (MQ=255)                                                                                                                                 tttAATAGATGGCATTGGTATTGGGGATGTAGGAAATATCGTGTTGAGAGACCGTCATCTTTTAGCAGAAGATGGTATCTTTATTGCTGTTGTAACGTTAGATCCTAAAAATAGACGTATAGCTGCGGGACCTGAAATTCa          <  2:922623/141‑1 (MQ=255)                                                                                                                                  ttAATAGATGGTATTGGTATTGGGGATGTAGGAAATATCGTGTTGAGAGACCGTCATCTTTTAGCAGAAGATGGTATCTTTATTGCTGTAGTAACGTTAGATCCTAAAAATAGACGTATAGCTGCGGGTCCTGAAATTCaa         >  2:84750/1‑141 (MQ=255)                                                                                                                                  ttAATAGATGGCATTGGTATTGGGGATGTAGGAAATATCGTGTTGAGAGACCGTCATCTTTTAGCAGAAGATGGTATCTTTATTGCTGTTGTAACGTTAGATCCTAAAAATAGACGTATAGCTGCGGGACCTGAAATTCaa         >  1:379062/1‑141 (MQ=255)                                                                                                                                   tAATAGATGGCATTGGTATTGGGGATGTAGGAAATATCGTGTTGAGAGACCGTCATCTTTTAGCAGAAGATGGTATCTTTATTGCTGTTGTAACGTTAGATCCTAAAAATAGACGTATAGCTGCGGGACCTGAAATTCAAt        >  1:809542/1‑141 (MQ=255)                                                                                                                                     aTAGATGGCATTGGTATTGGGGATGTAGGAAATATCGTGTTGAGAGACCGTCATCTTTTAGCAGAAGATGGTATCTTTATTGCTGTTGTAACGTTAGATCCTAAAAATAGACGTATAGCTGCGGGACCTGAAATTCAAtct      >  1:295118/1‑141 (MQ=255)                                                                                                                                     aTAGATGGCATTGGTATTGGGGATGTAGGAAATATCGTGTTGAGAGACCGTCATCTTTTAGCAGAAGATGGTATCTTTATTGCTGTTGTAACGTTAGATCCTAAAAATAGACGTATAGCTGCGGGACCTGAAATTCAAtct      >  1:1014618/1‑141 (MQ=255)                                                                                                                                     aTAGATGGCAGTGGTATGGGGGATGTAGGAAGTATCGTGTGGAGAGACCGTCATCTTTTAGCAGAAGATGGTATCTTTATTGCTGTTGTAACGTTAGATCCTAAAAATAGACGTATAGCTGCGGGACCTGAAATTCAAtct      <  2:990595/141‑1 (MQ=255)                                                                                                                                       aGATGGCATTGGTATTGGGGATGTAGGAAATATCGTGTTGAGAGACCGTCATCTTTTAGCAGAAGATGGTATCTTTATTGCTGTTGTAACGTTAGATCCTAAAAATAGACGTATAGCTGCGGGACCTGAAATTCAATCTCg    <  2:888301/141‑1 (MQ=255)                                                                                                                                         aTGGCATTGGTATTGGGGATGTAGGAAATATCGTGTTGAGAGACCGTCATCTTTTAGCAGAAGATGGTATCTTTATTGCTGTTGTAACGTTAGATCCTAAAAATAGACGTATAGCTGCGGGACCTGAAATTCAATCTCGTg  <  1:54198/141‑1 (MQ=255)                                                                                                                                             |                                                                                                                                         GCACATGCGAAGCTAGCAGCTGAAGCAGGTGTTGCACCAGAAAAGATTTTCCTTGTGGAAAAAGGAGATGTCATTAATTACAACGGTAAAGATATGATATTAAATGAAAAGGTAAATTCAGGAAATATTTTAATAGATGGCATTGGTATTGGGGATGTAGGAAATATCGTGTTGAGAGACCGTCATCTTTTAGCAGAAGATGGTATCTTTATTGCTGTTGTAACGTTAGATCCTAAAAATAGACGTATAGCTGCGGGACCTGAAATTCAATCTCGTG  >  CP000730/1299537‑1299813

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑