| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP000730 | 1,411,832 | T→C | 5.4% | H280H (CAT→CAC) | femA → | methicillin resistance factor FemA |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP000730 | 1,411,832 | 0 | T | C | 5.4% | 264.6 / 3.8 | 91 | H280H (CAT→CAC) | femA | methicillin resistance factor FemA |
| Reads supporting (aligned to +/- strand): ref base T (46/40); new base C (3/2); total (49/42) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.89e-01 | |||||||||||
GACCGTGTGTTAGTACCTTTAGCGTATATCAACTTTGATGAATATATTAAAGAACTAAACGAAGAGCGTGATATTTTAAATAAAGATTTAAATAAAGCGTTAAAGGATATTGAAAAACGTCCTGAAAATAAAAAAGCACATAACAAGCGAGATAACTTACAACAACAACTTGATGCAAATGAGCAAAAGATTGAAGAAGGTAAACGTCTACAAGAAGAACATGGTAATGAATTACCTATCTCTGCTGGTTTCTTCTTTATCAATCCATTTGAAGTTGTTT > CP000730/1411692‑1411971 | gACCGTGTGTTAGTACCTTTAGCGTATATCAACTTTGATGAATATATTAAAGAACTAAACGAAGAGCGTGATATTTTAAATAAAGATTTAAATAAAGCGTTAAAGGATATTGAAAAACGTCCTGAAAATAAAAAAGCACAt > 2:931539/1‑141 (MQ=255) aCCGTGTGTTAGTACCTTTAGCGTATATCAACTTTGATGAATATATTAAAGAACTAAACGAAGAGCGTGATATTTTAAATAAAGATTTAAATAAAGCGTTAAAGGATATTGAAAAACGTCCTGAAAATAAAAAAGCACATa > 1:759300/1‑141 (MQ=255) cGTGTGTTAGTACCTTTAGCGTATATCAACTTTGATGAATATATTAAAGAACTAAACGAAGAGCGTGATATTTTAAATAAAGATTTAAATAAAGCGTTAAAGGATATTGAAAAACGTCCTGAAAATAAAAAAGCACATAAc > 2:532457/1‑141 (MQ=255) cGTGTGTTAGTACCTTTAGCGTATATCAACTTTGATGAATATATTAAAGAACTAAACGAAGAGCGTGATATTTTAAATAAAGATTTAAATAAAGCGTTAAAGGATATTGAAAAACGTCCTGAAAATAAAAAAGCACATAAc > 2:360074/1‑141 (MQ=255) cGTGTGTTAGTACCTATAGAAAAAAACAAATTTGATGAATATATTAAAGAACTAAACGAAGAGCCTGATATTTTAAATAAAGATTTAAATAAAGCGTTAAAGGATATTGAAAAACGAAAAAAAAAAAAAAAAGCACATAAc < 2:669304/141‑1 (MQ=255) tgtgtTAGTACCTTTAGCGTATATCAACTTTGATGAATATATTAAAGAACTAAACGAAGAGCGTGATATTTTAAATAAAGATTTAAATAAAGCGTTAAAGGATATTGAAAAACGTCCTGAAAATAAAAAAGCACATAACaa > 2:880226/1‑141 (MQ=255) gtgtTAGTACCTTTAGCGTATATCAACTTTGATGAATATATTAAAGAACTAAACGAAGAGCGTTATATTTTAAATAAAGATTTAAATAAAGCGTTAAAGGATATTGAAAAACGTCCTGAAAATAAAAAAGCACATAACaaa > 2:87710/1‑140 (MQ=255) tgtTAGTACCTTTAGCGTATATCAACTTTGATGAATATATTAAAGAACTAAACGAAGAGCGTGATATTTTAAATAAAGATTTAAATAAAGCGTTAAAGGATATTGAAAAACGTCCTGAAAATAAAAAAGCACATAACAAGc < 2:671378/141‑1 (MQ=255) gtTAGTACCTTTAGCGTATATCAACTTTGATGAATATATTAAAGAACTAAACGAAGAGCGTGATATTTTAAATAAAGATTTAAATAAAGCGTTAAAGGATATTGAAAAACGTCCTGAAAATAAAAAAGCACATAACAAGCg > 2:874838/1‑141 (MQ=255) ttAGTACCTTTAGCGTATATCAACTTTGATGAATATATTAAAGAACTAAACGAAGAGCGTGATATTTTAAATAAAGATTTAAATAAAGCGTTAAAGGATATTGAAAAACGTCCTGAAAATAAAAAAGCACATAACAAGCga < 1:740586/141‑1 (MQ=255) ttAGTACCTTTAGCGTATATCAACTTTGATGAATATATTAAAGAACTAAACGAAGAGCGTGATATTTTAAATAAAGATTTAAATAAAGCGTTAAAGGATATTGAAAAACGTCCTGAAAATAAAAAAGCACATAACAAGCga < 2:84865/141‑1 (MQ=255) tAGTACCTTTAGCGTATATCAACTTTGATGAATATATTAAAGAACTAAACGAAAAGCGTGATATTTTAAATAAAGATTTAAATAAAGCGTTAAAGGATATTGAAAAACGTCCTGAAAATAAAAAAGCACATAACAAGCgag > 1:548634/1‑141 (MQ=255) gTACCTTTAGCGTATATCAACTTTGATGAATATATTAAAGAACTAAACGAAGAGCGTGATATTTTAAATAAAGATTTAAATAAAGCGTTAAAGGATATTGAAAAACGAAAAAAAAAAAAAAAAGCACATAACAAGCGAGAt < 2:892759/141‑1 (MQ=255) ccTTTAGCGTATATCAACTTTGATGAATATATTAAAGAACTAAACGAAGAGCGTGATATTTTAAATAAAGATTTAAATAAAGCGTTAAAGGATATTGAAAAACGTCCTGAAAATAAAAAAGCACATAACAAGCGAGATAAc > 2:956590/1‑141 (MQ=255) cTTTAGCGTATATAAACTTTGATGAATATATTAAAGAACTAAACGAAGAGCGTGATATTTTAAATAAAGATTTAAATAAAGCGTTAAAGGATATTGAAAAACGTCCTGAAAATAAAAAAGCACATAACAAGCGAGATAACt < 1:97173/141‑1 (MQ=255) ttAGCGTATATCAACTTTGATGAATATATTAAAGAACTAAACGAAGAGCGTGATATTTTAAATAAAGATTTAAATAAAGCGTTAAAGGATATTGAAAAACGTCCTGAAAATAAAAAAGCACATAACAAGCGAGATAACTTa > 1:734725/1‑141 (MQ=255) ttAGCGTATATCAACTTTGATGAATATATTAAAGAACTAAACGAAGAGCGTGATATTTTAAATAAAGATTTAAATAAAGCGTTAAAGGATATTGAAAAACGTCCTGAAAATAAAAAAGCACATAACAAGCGAGATAACTTa < 1:288724/141‑1 (MQ=255) gCGTATATCAACTTTGATGAATATATTAAAGAACTAAACGAAGAGCGTGATATTTTAAATAAAGATTTAAATAAAGCGTTAAAGGATATTGAAAAACGTCCTGAAAATAAAAAAGCACATAACAAGCGAGATAACTTacaa > 2:366182/1‑141 (MQ=255) cGTATATCAACTTTGATGAATATATTAAAGAACTAAACGAAGAGCGTGATATTTTAAATAAAGATTTAAATAAAGCGTTAAAGGATATTGAAAAACGTCCTGAAAATAAAAAAGCACATAACAAGCGAGATAACTTacaac > 2:696293/1‑141 (MQ=255) cGTATATCAACTTTGATGAATATATTAAAGAACTAAACGAAGAGCGTGATATTTTAAATAAAGATTTAAATAAAGCGTTAAAGGATATTGAAAAACGTCCTGAAAATAAAAAAGCACATAACAAGCGAGATAACTTacaac > 1:660651/1‑141 (MQ=255) cGTATATCAAATTTGATGAATATAATAAAGAAATAAACGAAGAGCGTGATATTTTAAATAAAGATTTAAATAAAGCGTTAAAGGATATTGAAAAAAGAAAAAAAAAAAAAAAAGCACATAACAAGCGAGATAACTTacaac < 2:1034911/141‑1 (MQ=255) gTATATCAACTTTGATGAATATATTAAAGAACTAAACGAAGAGCGTGATATTTTAAATAAAGATTTAAATAAAGCGTTAAAGGATATTGAAAAACGTCCTGAAAATAAAAAAGCACATAACAAGCGAGATAACTTacaaca < 1:669495/141‑1 (MQ=255) atataTCAACTTTAATGAATATATTAAAGAACTAAACGAAGAGCGTGATATTTTAAATAAAGATTTAAATAAAGCGTTAAAGGATATTGAAAAACGTCCTGAAAATAAAAAAGCACATAACAAGCGAGATAACTTacaaca < 2:545424/140‑1 (MQ=255) tataTCAACTTTGATGAATATATTAAAGAACTAAACGAAGAGCGTGATATTTTAAATAAAGATTTAAATAAAGCGTTAAAGGATATTGAAAAACGTCCTGAAAATAAAAAAGCACATAACAAGCGAGATAACTTacaacaa < 2:865453/141‑1 (MQ=255) tatCAACTTTGATGAATATATTAAAGAACTAAACGAAGAGCGTGATATTTTAAATAAAGATTTAAATAAAGCGATAAAGGATATTGAAAAACGTCCTGAAAATAAAAAAGCACATAACAAGCGAGATAACTTacaacaaca > 2:1055863/1‑141 (MQ=255) cAACTTTGATGAATATATTAAAGAACTAAACGAAGAGCGTGATATTTTAAATAAAGATTTAAATAAAGCGTTAAAGGATATTGAAAAACGTCCTGAAAATAAAAAAGCACATAACAAGCGAGATAACTTACAACAACAACt > 2:519194/1‑141 (MQ=255) cAACTTTGATGAATATATTAAAGAACTAAACGAAGAGCGTGATATTTTAAATAAAGATTTAAATAAAGCGTTAAAGGATATTGAAAAACGTCCTGAAAATAAAAAAGCACATAACAAGCGAGATAACTTACAACAACAACt > 1:170461/1‑141 (MQ=255) aaCTTTGATGAATATATTAAAGAACTAAACGAAGAGCGTGATATTTTAAATAAAGATTTAAATAAAGCGTTAAAGGATATTGAAAAACGTCCTGAAAATAAAAAAGCACATAACAAGCGAGATAACTTACAACAACAACtt > 2:493122/1‑141 (MQ=255) aaCTTTGATGAATATATTAAAGAACTAAACGAAGAGCGTGATATTTTAAATAAAGATTTAAATAAAGCGTTAAAGGATATTGAAAAACGTCCTGAAAATAAAAAAGCACATAACAAGCGAGATAACTTACAACAACAACtt < 1:962002/141‑1 (MQ=255) aaCTTTGATGAATATATTAAAGAACTAAACGAAGAGCGTGATATTTTAAATAAAGATTTAAATAAAGCGTGAAAGGATATTGAAAAACGTCCTGAAAAGAAAAAAGCACATAACAAGCGAGATGACTTACAACAACAACtt > 2:787101/1‑141 (MQ=255) ttGATGAATATATTAAAGAACTAAACGAAGAGCGTGATATTTTAAATAAAGATTTAAATAAAGCGTTAAAGGATATTGAAAAACGTCCTGAAAATAAAAAAGCACATAACAAGCGAGATAACTTACAACAACAACTTGATg > 1:117377/1‑141 (MQ=255) ttGATGAATATATTAAAGAACTAAACGAAGAGCGTGATATTTTAAATAAAGATTTAAATAAAGCGTTAAAGGATATTGAAAAACGTCCTGAAAATAAAAAAGCACATAACAAGCGAGATAACTTACAACAACAACTTGATg > 1:117491/1‑141 (MQ=255) tgatgaATATATTAAAGAACTAAACGAAGAGCGTGATATTTTAAATAAAGATTTAAATAAAGCGTTAAAGGATATTGAAAAACGTCCTGAAAATAAAAAAGCACATAACAAGCGAGATAACTTACAACAACAACTTGATGc > 2:256207/1‑141 (MQ=255) gatgaATATATTAAAGAACTAAACGAAGAGCGTGATATTTTAAATAAAGATTTAAATAAAGCGTTAAAGGATATTGAAAAACGTCCTGAAAATAAAAAAGCACATAACAAGCGAGATAACTTACAACAACAACTTGATGCa > 2:187153/1‑141 (MQ=255) gatgaATATATTAAAGAACTAAACGAAGAGCGTGATATTTTAAATAAAGATTTAAATAAAGCGTTAAAGGATATTGAAAAACGTCCTGAAAATAAAAAAGCACACAACAAGCGAGATAACTTACAACAACAACTTGATGct > 1:769889/1‑140 (MQ=255) gatgaATATATTAAAGAACTAAACGAAGAGCGTGATATTTTAAATAAAGATTTAAATAAAGCGTTAAAGGATATTGAAAAACGTCCTGAAAATAAAAAAGCAAACAACAAGCGAGATAACTTACAACAACAAATTGATgat > 2:92503/1‑139 (MQ=255) atgaATATATTAAAGAACTAAACGAAGAGCGTGATATTTTAAATAAAGATTTAAATAAAGCGTTAAAGGATATTGAAAAACGTCCTGAAAATAAAAAAGCACATAACAAGCGAGATAACTTACAACAACAACTTGATGCaa > 2:950865/1‑141 (MQ=255) tgaATATATTAAAGAACTAAACGAAGAGCGTGATATTTTAAATAAAGATTTAAATAAAGCGTTAAAGGATATTGAAAAACGTCCTGAAAATAAAAAAGCACATAACAAGCGAGATAACTTACAACAACAACTTGATGCaaa > 1:932515/1‑141 (MQ=255) tgaATATATTAAAGAACTAAACGAAGAGCGTGATATTTTAAATAAAGATTTAAATAAAGCGTTAAAGGATATTGAAAAACGTCCTGAAAATAAAAAAGCACATAACAAGCGAGATAACTTACAACAACAACTTGATGCaaa < 1:471076/141‑1 (MQ=255) tgaATATATTAAAGAACTAAACGAAGAGCGTGATATTTTAAATAAAGATTTAAATAAAGCGTTAAAGGATATTGAAAAACGTCCTGAAAATAAAAAAGCACACAACAAGCGAGATAACTTACAACAACAACTTGATGctaa > 2:848316/1‑138 (MQ=255) aagagatTAAAGAACTAAACGAAGAGCGTGATATTTTAAATAAAGATTTAAATAAAGCGTTAAAGGATATTGAAAAACGTCCTGAAAATAAAAAAGCACATAACAAGCGAGATAACTTACAACAACAAATTGATGCAAATg > 2:482752/6‑141 (MQ=255) atTAAAGAAGTAAACTAATGGCGTGATATTTTAAATAAAGATTTAAATAAAGCGTTAAAGGATATGGAAAAACGTCCTGAAAATAAAAAAGCACATAACAAGCGAGATAACTTACAACAACAACTTGATGCAAATGAGCaa < 2:586170/141‑1 (MQ=255) atTAAAGAACTAAACGAAGAGCGTGATATTTTAAATAAAGATTTAAATAAAGCGTTAAAGGATATTGAAAAACGTCCTGAAAATAAAAAAGCACATAACAAGCGAGATAACTTACAACAACAACTTGATGCAAATGAGCaa < 1:700015/141‑1 (MQ=255) ttAAAGAACTAAACGAAGAGCGTGATATTTTAAATAAAGATTTAAATAAAGCGATAAAGGATATTGAAAAACGTCCTGAAAATAAAAAAGCACATAACAAGCGAGATAACTTACAACAACAACTTGATGCAAATGAGCaaa > 2:927871/1‑141 (MQ=255) tAAAGAACTAAACGAAGAGCGTGATATTTTAAATAAAGATTTAAATAAAGCGTTAAAGGATATTGAAAAACGTCCTGAAAATAAAAAAGCACATAACAAGCGAGATAACTTACAACAACAACTTGATGCAAATGAGCaaaa > 1:368818/1‑141 (MQ=255) aaaGAACTAAACGAAGAGCGTGATATTTTAAATAAAGATTTAAATAAAGCGTTAAAGGATATTGAAAAACGTCCTGAAAATAAAAAAGCACATAACAAGCGAGATAACTTACAACAACAACTTGATGCAAATGAGCAAAAg < 2:124023/141‑1 (MQ=255) aaGAACTAAACGAAGAGCGTGATATTTTAAATAAAGATTTAAATAAAGCGTTAAAGGATATTGAAAAACGTCCTGAAAATAAAAAAGCACATAACAAGCGAGATAACTTACAACAACAACTTGATGCAAATGAGCAAAAGa < 1:23570/141‑1 (MQ=255) aaGAACTAAACGAAGAGCGTGATATTTTAAATAAAGATTTAAATAAAGCGTTAAAGGATATTGAAAAACGTCCTGAAAATAAAAAAGCACACAACAAGCGAGATAACTTACAACAACAACTTGATGCTAATGAGCAAAAGa < 1:517713/141‑1 (MQ=255) aCTAAACGAAGAGCGTGATATTTTAAATAAAGATTTAAATAAAGCGTTAAAGGATATTGAAAAACGTCCTGAAAATAAAAAAGCACATAACAAGCGAGATAACTTACAACAACAACTTGATGCAAATGAGCAAAAGATTga > 1:41684/1‑141 (MQ=255) aCTAAACGAAGAGCGTGATATTTTAAATAAAGATTTAAATAAAGCGTTAAAGGATATTGAAAAACGTCCTGAAAATAAAAAAGCACATAACAAGCGAGATAACTTACAACAACAACTTGATGCAAATGAGCAAAAGATTga < 1:170089/141‑1 (MQ=255) ttttattttttGATATTTTAAATAAAGATTTAAATAAAGCGTTAAAGGATATTGAAAAACGTCCTGAAAATAAAAAAGCACATAACAAGCGAGATAACTTACAACAACAACTTGATACAAATGAGCAAAAGATTGaagaag > 2:768755/11‑141 (MQ=255) atgAAGATCGTGATATTTTAAATAAAGATTTAAATAAAGCGTTAAAGGATATTGAAAAACGTCCTGAAAATAAAAAAGCATATAACGGTCGAGAGAACTTACAACAACATCTTGATGCAAATGAGCAAAAGATTTaagtag < 2:491373/139‑1 (MQ=255) aagAAGAGCGTGATATTTTAAATAAAAATTTAAATAAAGCGTTAAAGTATATTGAAAAACGTACTGAAAATAAAAAAGCACATAACAAGCGAGATAACTTACAACAACAACTTGATGCAAATGAGCAAAAGATTGaagaag < 2:472622/139‑1 (MQ=255) aCGAAGAGCGTGATATTTTAAATAAAGATTTAAATAAAGCGTTAAAGGATATTGAAAAACGTCCTGAAAATAAAAAAGCACATAACAAGCGAGATAACTTACAACAACAACTTGATGCAAATGAGCAAAAGATTGaagaag > 1:139892/1‑141 (MQ=255) gAAGAGCGTGATATTTTAAATAAAGATTTAAATAAAGCGTTAAAGGATATTGAAAAACGTCCTGAAAATAAAAAAGCACATAACAAGCGAGATAACTTACAACAACAACTTGATGCAAATGAGCAAAAGATTGAAGAAGGt > 1:598956/1‑141 (MQ=255) agagCGTGATATTTTAAATAAAGATTTAAATAAAGCGTTAAAGGATATTGAAAAACGTCCTGAAAATAAAAAAGCACATAACAAGCGAGATAACTTACAACAACAACTTGATGCAAATGAGCAAAAGATTGAAGAAGGTaa < 1:999745/141‑1 (MQ=255) gagCGTGATATTTTAAATAAAGATTTAAATAAAGCGTTAAAGGATATTGAAAAACGTCCTGAAAATAAAAAAGCACATAACAAGCGAGATAACTTACAACAACAACTTGATGCAAATGAGCAAAAGATTGAAGAAGGTaaa < 1:226097/141‑1 (MQ=255) gCGTGATATTTTAAATAAAGATTTAAATAAAGCGTTAAAGGATATTGAAAAACGTCCTGAAAATAAAAAAGCACATAACAAGCGAGATAACTTACAACAACAACTTGATGCAAATGAGCAAAAGATTGAAGAAGGTAAACg > 1:436859/1‑141 (MQ=255) cGTGATATTTTAAATAAAGATTTAAATAAAGCGTTAAAGGATATTGAAAAACGTCCTGAAAATAAAAAAGCACATAACAAGCGAGATAACTTACAACAACAACTTGATGCAAATGAGCAAAAGATTGAAGAAGGTAAACGt < 2:734725/141‑1 (MQ=255) ttttAAATAAAGATTTAAATAAAGCGTTAAAGGATATTGAAAAACGTCCTGAAAATAAAAAAGCACATAACAAGCGAGATAACTTACAACAACAACTTGATGCAAATGAGCAAAAGATTGAAGAAGGTAAACGTCTACaag < 1:333870/141‑1 (MQ=255) aataaaGATTTAAATAAAGCGTTAAAGGATATTGAAAAACGTCCTGAAAATAAAAAAGCACATAACAAGCGAGATAACTTACAACAAAAACTTGATGCAAATGAGCAAAAGATTGAAGAAGGTAAACGTCTACAAgaagaa > 1:76606/1‑141 (MQ=255) aGATTTAAATAAAGCGTTAAAGGATATTGAAAAACGTCCTGAAAATAAAAAAGCACATAACAAGCGAGATAACTTACAACAACAACTTGATGCAAATGAGCAAAAGATTGAAGAAGGTAAACGTCTACAAGAAGAACATgg < 1:198350/141‑1 (MQ=255) gATTTAAATAAAGCGTTAAAGGATATTGAAAAACGTCCTGAAAATAAAAAAGCACATAACAAGCGAGATAACTTACAACAACAACTTGATGCAAATGAGCAAAAGATTGAAGAAGGTAAACGTCTACAAGAAGAACATGGt > 1:448464/1‑141 (MQ=255) ttAAATAAAGCGTTAAAGGATATTGAAAAACGTCCTGAAAATAAAAAAGCACATAACAAGCGAGATAACTTACAACAACAACTTGATGCAAATGAGCAAAAGATTGAAGAAGGTAAACGTCTACAAGAAGAACATGGTAAt < 2:7509/141‑1 (MQ=255) aataaaGCGTTAAAGGATCTTGAAAAACGCCCTGAAAATAAAAAAGCACATAACAAGCGAGCTAACTTACAACAACAACTTGATGCAAATGAGCAACAGATTGAAGAAGGTAAACGTCTACAAGAAGACCATGGTAATGac > 2:824973/1‑140 (MQ=255) aataaaGCGTTAAAGGATATTGAAAAACGTCCTGAAAATAAAAAAGCACATAACAAGCGAGATAACTTACAACAACAACTTGATGCAAATGAGCAAAAGATTGAAGAAGGTAAACGTCTACAAGAAGAACATGGTAATGaa > 1:930605/1‑141 (MQ=255) ataaaGCGTTAAAGGATATTGAAAAACGTCCTGAAAATAAAAAAGCACATAACAAGCGAGATAACTTACAACAACAACTTGATGCAAATGAGCAAAAGATTGAAGAAGGTAAACGTCTACAAGAAGAACATGGTAATGAAt > 1:335831/1‑141 (MQ=255) gCGTTAAAGGATATTGAAAAACGTCCTGAAAATAAAAAAGCACATAACAAGCGAGATAACTTACAACAACAACTTGATGCAAATGAGCAAAAGATTGAAGAAGGTAAACGTCTACAAGAAGAACATGGTAATGAATTACCt < 2:335831/141‑1 (MQ=255) gCGATAAAGGATATTGAAAAACGTCCTGAAAATAAAAAAGCACATAACAAGCGAGATAACTTACAACAACAACTTGATGCAAATGAGCAAAAGATTGAAGAAGGTAAACGTCTACAAGAAGAACATGGTAATGAATTACCt > 2:403520/1‑141 (MQ=255) ttAAAGGATATTGAAAAACGTCCTGAAAATAAAAAAGCACACAACAAGCGAGATAACTTACAACAACAACTTGATGCTAATGAGCAAAAGATTGAAGAAGGTAAACGTCTACAAGAAGAACATGGTAATGAATTACCTAtc < 1:848316/141‑1 (MQ=255) tgATATTTAAAAACGTCCTGAAAATAAAAAAGCACATAACAAGCGAGATAACTTACAACAACAACTTGATGCAAATGAGCAAAAGATTGAAGAAGGTAAACGTCTACAAGAAGAACATGGTAATCAATTACCTATATccgc < 2:1024333/140‑1 (MQ=255) atatTGAAAAACGTCCTGAAAATAAAAAAGCACATAACAAGCGAGATAACTTACAACAACAACTTGATGCAAATGAGCAAAAGATTGAAGAAGGTAAACGTCTACAAGAAGAACATGGTAATGAATTACCTATCTctgctg < 2:929427/141‑1 (MQ=255) tatTGAAAAACGTCCTGAAAATAAAAAAGCACATAACAAGCGAGATAACTTACAACAACAACTTGATGCAAATGAGCAAAAGATTGAAGAAGGTAAACGTCTACAAGAAGAACATGGTAATGAATTACCTATCTCTGCTgg < 2:660651/141‑1 (MQ=255) tGAAAAACGTCCTGAAAATAAAAAAGCACATAACAAGCGAGATAACTTACAACAACAACTTGATGCAAATGAGCAAAAGATTGAAGAAGGTAAACGTCTACAAGAAGAACATGGTAATGAATTACCTATCTCTGCTGGttt < 2:709697/141‑1 (MQ=255) tGAAAAACGTCCTGAAAATAAAAAAGCACATAACAAGCGAGATAACTTACAACAACAACTTGAGTCAAATGAGCAAAAGATTGAAGAAGGTAAACGTCTACAAGAAGAACATGGTAATGAATTACCTATCTCTGCTGGttt < 1:293619/141‑1 (MQ=255) gAAAAACGTCCTGAAAATAAAAAAGCACATAACAAGCGAGATAACTTACAACAACAACTTGATGCAAATGAGCAAAAGATTGAAGAAGGTAAACGTCTACAAGAAGAACATGGTAATGAATTANCTATCTCTGCTGGTttc > 1:733066/1‑141 (MQ=255) aaaaaCGTCCTGAAAATAAAAAAGCACATAACAAGCGAGATAACTTACAACAACAACTTGATGCAAATGAGCAAAAGATTGAAGAAGGTAAACGTCTACAAGAAGAACATGGTAATGAATTACCTATCTCTGCTGGTttct > 1:326153/1‑141 (MQ=255) gTCCTGAAAATAAAAAAGCACATAACAAGCGAGATAACTTACAACAACAACTTGATGCAAATGAGCAAAAGATTGAAGAAGGTAAACGTCTACAAGAAGAACATGGTAATGAATTACCTATCTCTGCTGGTTTCTTCTTTa > 2:473817/1‑141 (MQ=255) gAAAATAAAAAAGCACATAACAAGCGAGATAACTTACAACAACAACTTGATGCAAATGAGCAAAAGATTGAAGAAGGTAAACGTCTACAAGAAGAACATGGTAATGAATTACCTATCTCTGCTGGTTTCTTCTTTATCAAt < 2:658650/141‑1 (MQ=255) gAAAATAAAAAAGCACATAACAAGCGAGATAACTTACAACAACAACTTGATGCAAATGAGCAAAAGATTGAAGAAGGTAAACGTCTACAAGAAGAACATGGTAATGAATTACCTATCTCTGCTGGTTTCTTCTTTATCAAt < 1:338595/141‑1 (MQ=255) gAAAATAAAAAAGCACATAACAAGCGAGATAACTTACAACAACAACTTGATGCAAATGAGCAAAAGATTGAAGAAGGTAAACGTCTACAAGAAGAACATGGTAATGAATTACCTATCTCTGCTGGTTTCTTCTTTATCAAt < 2:903886/141‑1 (MQ=255) aaaaTAAAAAAGCACATAACAAGCGAGATAACTTACAACAACAACTTGATGCAAATGAGCAAAAGATTGAAGAAGGTAAACGTCTACAAGAAGAACATGGTAATGAATTACCTATCTCTGCTGGTTTCTTCTTTATCAATc < 1:564516/141‑1 (MQ=255) aaaTAAAAAAGCACATAACAAGCGAGATAACTTACAACAACAACTTGATGCAAATGAGCAAAAGATTGAAGAAGGTAAACGTCTACAAGAAGAACATGGTAATGAATTACCTATCTCTGCTGGTTTCTTCTTTATCAATcc > 1:776764/1‑141 (MQ=255) aaaaaaGCACATAACAAGCGAGATAACTTACAACAACAACTTGATGCAAATGAGCAAAAGATTGAAGAAGGTAAACGTCTACAAGAAGAACATGGTAATGAATTACCTATCTCTGCTGGTTTCTTCTTTATCAATCCAttt > 1:75056/1‑141 (MQ=255) aaaaaGCACATAACAAGCGAGATAACTTACAACAACAACTTGATGCAAATGAGCAAAAGATTGAAGAAGGTAAACGTCTACAAGAAGAACATGGTAATGAATTACCTATCTCTGCTGGTTTCTTCTTTATCAATCCATTTg > 2:828183/1‑141 (MQ=255) aaaGCACATAACAAGCGAGATAACTTACAACAACAACTTGATGCAAATGAGCAAAAGATTGAAGAAGGTAAACGTCTACAAGAAGAACATGGTAATGAATTACCTATCTCTGCTGGTTTCTTCTTTATCAATCCATTTGaa < 1:961047/141‑1 (MQ=255) aaaGCACATAACAAGCGAGATAACTTACAACAACAACTTGATGCAAATGAGCAAAAGATTGAAGAAGGTAAACGTCTACAAGAAGAACATGGTAATGAATTACCTATCTCTGCTGGTTTCTTCTTTATCAATCCATTTGaa > 2:432964/1‑141 (MQ=255) aaaGCACATAACAAGCGAGATAACTTACAACAACAACTTGATGCAAATGAGCAAAAGATTGAAGAAGGTAAACGTCTACAAGAAGAACATGGTAATGAATCACCTATCTCTGCTGGTTTCTTCTTTATCAATCCATTTGaa > 1:69057/1‑141 (MQ=255) aaaGCACATAACAAGCGAGATAACTTACAACAACAACTTGATGCAAATGAGCAAAAGATTGAAGAAGGTAAACGTCTACAAGAAGAACATGGTAATGAATCACCTATCTCTGCTGGTTTCTTCTTTATCAATCCATTTGaa > 1:69104/1‑141 (MQ=255) aaGCACATAACAAGCGAGATAACTTACAACAACAACGTGATGCAAATGAGCAAAAGATTGAAGAAGGTAAACGTCTACAAGAAGAACATGGTAATGAATTACCTATCTCTGCTGGTTTCTTCTTTATCAATCCATTTGAAg < 2:534596/141‑1 (MQ=255) aGCACATAACAAGCGAGATAACTTACAACAACAACTTGATGCAAATGAGCAAAAGATTGAAGAAGGTAAACGTCTACAAGAAGAACATGGTAATGAATTACCTATCTCTGCTGGTTTCTTCTTTATCAATCCATTTGAAgt < 1:670193/141‑1 (MQ=255) aTAACAAGCGAGATAACTTACAACAACAACTTGATGCAAATGAGCAAAAGATTGAAGAAGGTAAACGTCTACAAGAAGAACATGGTAATGAATTACCTATCTCTGCTGGTTTCTTCTTTATCAATCCATTTGAAGTTGttt < 2:969783/141‑1 (MQ=255) | GACCGTGTGTTAGTACCTTTAGCGTATATCAACTTTGATGAATATATTAAAGAACTAAACGAAGAGCGTGATATTTTAAATAAAGATTTAAATAAAGCGTTAAAGGATATTGAAAAACGTCCTGAAAATAAAAAAGCACATAACAAGCGAGATAACTTACAACAACAACTTGATGCAAATGAGCAAAAGATTGAAGAAGGTAAACGTCTACAAGAAGAACATGGTAATGAATTACCTATCTCTGCTGGTTTCTTCTTTATCAATCCATTTGAAGTTGTTT > CP000730/1411692‑1411971 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |