Predicted mutation
evidence seq id position mutation freq annotation gene description
RA CP000730 2,119,757 C→T 5.7% K163K (AAG→AAA)  USA300HOU_1992 ← hypothetical protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0007302,119,7570CT 5.7% 275.9 / 4.0 88K163K (AAG→AAA) USA300HOU_1992hypothetical protein
Reads supporting (aligned to +/- strand):  ref base C (36/47);  new base T (3/2);  total (39/49)
Fisher's exact test for biased strand distribution p-value = 6.52e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.15e-01

TCTTGTCCGTAAGAATCTTTTTCTTTGTTTCAATTTCATGATCTCCAAGAATATTATTTAGTTCTTTAAAATCATCATTTGTTTTAATGACATCCTCATCATTGATTGGTTTAGCAATTTCAAACAACAAACTTCTTCGCTTCTTCCAATCTAGTAAGTTAAATGCTTGAGGGTTCGTAATTAACTTGAATACATCTTCATCAATAAGTTCATCAATACGAGCTTTATAATCCTTTACTTTTATTGATTCATCATTGATATATTGTTTCTTCGTTCGA  >  CP000730/2119618‑2119895
                                                                                                                                           |                                                                                                                                          
tCTTGTCCGTAAGAATCTTTTTCTTTGTTTCAATTTCATGATCTCCAAGAATATTATTTAGTTCTTTAAAATCATCATTTGTTTTAATGACATCCTCATCATTGATTGGTTTAGCAATTTCAAACAACAAACTTCTTCGct                                                                                                                                           >  1:649649/1‑141 (MQ=255)
 cTTGTCCGTAAGAATCTTTTTCTTTGTTTCAATTTCATGATCTCCAAGAATATTATTTAGTTCTTTAAAATCATCATTTGTTTTAATGACATCCTCATCATTGATTGGTTTAGCAATTTCAAACAACAAACTTCTTCGctt                                                                                                                                          >  1:148902/1‑141 (MQ=255)
 cTTGTCCGTAAGAATCTTTTTCTTTGTTTCAATTTCATGATCTCCAAGAATATTATTTAGTTCTTTAAAATCATCATTTGTTTTAATGACATCCTCATCATTGATTGGTTTAGCAATTTCAAACAACAAACTTCTTCGctt                                                                                                                                          >  1:148976/1‑141 (MQ=255)
    gTCCGTAAGAATCTTTTTTTTTTTTTTTTTTTCATGATCTCCAAGAATATTATTTAGTTCTTTAAAATCATCATTTGTTTTAATGCCATCCTCATCATTGTTTTGTTTTGCAATTTCAAACAACTATCTTCTTTTcttctt                                                                                                                                       >  2:235782/1‑141 (MQ=255)
       cGTAAGAATCTTTTTCTTTGTTTCAATTTCATGATCTCCAAGAATATTATTTAGTTCTTTAAAATCATCATTTGTTTTAATGACATCCTCATCATTGATTGGTTTAGCAATTTCAAACAACAAACTTCTTCGCTTCTTCCa                                                                                                                                    >  2:181441/1‑141 (MQ=255)
       cGTAAGAAGCTTTTTCTTTGTTTCAATTTCATGATCTCCAAGAATATTATTTAGTTCTTTAAAATCATCATTTGTTTTAATGACATCCTCATCATTGATTGGTTTAGCAATTTCAAACAACAAACTTCTTCGCTTCTTCCa                                                                                                                                    <  2:520865/141‑1 (MQ=255)
           aGAATCTTTTTCTTTGTTTCAATTTCATGATCTCCAAGAATATTATTTAGTTCTTTAAAATCATCATTTGTTTTAATGACATCCTCATCATTGATTGGTTTAGCAATTTCAAACAACAAACTTCTTCGCTTCTTCCAATCt                                                                                                                                >  2:700677/1‑141 (MQ=255)
              aTCTTTTTCTTTGTTTCAATTTCATGATCTCCAAGAATATTATTTAGTTCTTTAAAATCATCATTTGTTTTAATGACATCCTCATCATTGATTGGTTTAGCAATTTCAAACAACAAACTTCTTCGCTTCTTCCAATCTAGt                                                                                                                             <  2:634471/141‑1 (MQ=255)
              aTCTTTTTCTTTGTTTCAATTTCATGATCTCCAAGAATATTATTTAGTTCTTTAAAATCATCATTTGTTTTAATGACATCCTCATCATTGATTGGTTTAGCAATTTCAAACAACAAACTTCTTCGCTTCTTCCAATCTAGt                                                                                                                             <  1:399725/141‑1 (MQ=255)
              aTCTTTTTCTTTGTTTCAATTTCATGATCTCCAAGAATATTATTTAGTTCTTTAAAATCATCATTTGTTTTAATGACATCCTCATCATTGATTGGTTTAGCAATTTCAAACAACAAACTTCTTCGCTTCTTCCAATCTAGt                                                                                                                             <  2:149408/141‑1 (MQ=255)
                 tttttCTTTGTTTCAATTTCATGATCTCCAAGAATATTATTTAGTTCTTTAAAATCATCATTTGTTTTAATGACATCCTCATCATTGATTGGTTTAGCAATTTCAAACAACAAACTTCTTCGCTTCTTCCAATCTAGTAAg                                                                                                                          >  1:1043209/1‑141 (MQ=255)
                  ttttCTTTGTTTCAATTTCATGATCTCCAAGAATATTATTTAGTTCTTTAAAATCATCATTTGTTTTAATGACATCCTCATCATTGATTGGTTTAGCAATTTCAAACAACAAACTTCTTCGCTTCTTCCAATCTAGTAAGt                                                                                                                         <  1:179336/141‑1 (MQ=255)
                  ttttCTTTGTTTCAATTTCATGATCTCCAAGAATATTATTTAGTTCTTTAAAATCATCATTTGTTTTAATGACATCCTCATCATTGATTGGTTTAGCAATTTCAAACAACAAACTTCTTCGCTTCTTCCAATCTAGTAAGt                                                                                                                         <  2:500684/141‑1 (MQ=255)
                   tttCTTTGTTTCAATTTCGTGATCTCCAAGAATATTATTTAGTTCTTTAAAATCATCATTTGTTTTAATGACATCCTCATCATTGATTGGTTTAGCGATTTCAAACAACAAACTTCTTCGTTTCTTCCAATCTAGTAAGtt                                                                                                                        >  1:287453/1‑141 (MQ=255)
                    ttCTTTGTTTCAATTTCATGATCTCCAAGAATATTATTTAGTTCTTTAAAATCATCATTTGTTTTAATGACATCCTCATCATTGATTGGTTTAGCAATTTCAAACAACAAACTTCTTCGCTTCTTCCAATCTAGTAAGTTa                                                                                                                       >  1:349059/1‑141 (MQ=255)
                     tCTTTGTTTCAATTTCATGATCTCCAAGAATATTATTTAGTTCTTTAAAATCATCATTTGTTTTAATGACATCCTCATCATTGATTGGTTTAGCAATTTCAAACAACAAACTTCTTCGCTTCTTCCAATCTAGTAAGTTaa                                                                                                                      <  1:412631/141‑1 (MQ=255)
                      cTTTGTTTCAATTTCATGATCTCCAAGAATATTATTTAGTTCTTTAAAATCATCATTTGTTTTAATGACATCCTCATCATTGATTGGTTTAGCAATTTCAAACAACAAACTTCTTCGCTTCTTCCAATCTAGTAAGTTaaa                                                                                                                     >  1:30634/1‑141 (MQ=255)
                      cTTTGTTTCAATTTCATGATCTCCAAGAATATTATTTAGTTCTTTAAAATCATCATTTGTTTTAATGACATCCTCATCATTGATTGGTTTAGCAATTTCAAACAACAAACTTCTTCGCTTCTTCCAATCTAGTAAGTTaaa                                                                                                                     >  1:889333/1‑141 (MQ=255)
                          gTTTCAATTTCATGATCTCCAAGAATATTATTTAGTTCTTTAAAATCATCATTTGTTTTAATGACATCCTCATCATTGATTGGTTTAGCAATTTCAAACAACAAACTTCTTCGCTTCTTCCAATCTAGTAAGTTAAATGCt                                                                                                                 >  2:147973/1‑141 (MQ=255)
                          gTTTCAATTTCATGATCTCCAAGAATATTATTTAGTTCTTTAAAATCATCATTTGTTTTAATGACATCCTCATCATTGATTGGTTTAGCAATTTCAAACAACAAACTTCTTCGCTTCTTCCAATCTAGTAAGTTAAATGCt                                                                                                                 <  1:756069/141‑1 (MQ=255)
                          gTTTCAATTTCATGATCTCCAAGAATATTATTTAGTTCTTTAAAATCATCATTTGTTTTAATGACATCCTCATCATTGATTGGTTTAGCAATTTCAAACAACAAACTTCTTCGCTTCTTCCAATCTAGTAAGTTAAATGCt                                                                                                                 <  1:776367/141‑1 (MQ=255)
                           tttCAATTTCATGATCTCCAAGAATATTATTTAGTTCTTTAAAATCATCATTTGTTTTAACGACATCCTCATCATTGATTGGTTTAGCAATTTCAAACAACAAACTTCTTCGCTTCTTCCAATCTAGTAAGTTAAATGCtt                                                                                                                >  1:491511/1‑141 (MQ=255)
                              aattctgaTGATCGCCAAGAATATTATTTAGTTCTTTAAAATCATCATTTGTTTTAATGACATCCTCATCATTGATTGGTTTAGCAATTTCAAACAACAAACTTCTTCGCTTCTTCCAATCTAGCAAGTTACATGCTTGAg                                                                                                             <  2:855958/134‑1 (MQ=255)
                                aTTTCATGATCTCCAAGAATATTATTTAGTTCTTTAAAATCATCATTTGTTTTAATGACATCCTCATCATTGATTGGTTTAGCAATTTCAAACAACAAACTTCTTCGCTTCTTCCAATCTAGTAAGTTAAATGCTTGAggg                                                                                                           >  2:888023/1‑141 (MQ=255)
                                aTTTCATGATCTCCAAGAATATTATTTAGTTCTTTAAAATCATCATTTGTTTTAATGACATCCTCATCATTGATTGGTTTAGCAATTTCAAACAACAAACTTCTTCGCTTCTTCCAATCTAGTAAGTTAAATGCTTGAggg                                                                                                           <  2:649649/141‑1 (MQ=255)
                                   tCATGATCTCCAAGAATATTATTTAGTTCTTTAAAATCATCATTTGTTTTAATGACATCCTCATCATTGATTGGTTTAGCAATTTCAAACAACAAACTTCTTCGCTTCTTCCAATCTAGTAAGTTAAATGCTTGAGGGTTc                                                                                                        <  1:134418/141‑1 (MQ=255)
                                    cATGATCTCCAAGAATATTATTTAGTTCTTTAAAATCATCATTTGTTTTAATGACATCCTCATCATTGATTGACTTAGAAATTCCAAAACCCCACATACTTCGCTACATCCCATATAGTAAGTTCTATGCTTGAAGGATCg                                                                                                       >  1:373334/1‑141 (MQ=255)
                                    cATGATCNCCAATAATATTATTTAGTTCTTTAAAATCATCATTTGTTTTAATGACATCCTCATCATTGATTGGTTTAGCTATTTCAAACAACAAACTTCTTCGCTTCTTCCAATCTAGTAAGTTAAATGCTTGAGGGTTCg                                                                                                       <  2:810977/141‑1 (MQ=255)
                                     aTGATCTCCAAGAATATTATTTAGTTCTTTAAAATCATCATTTGTTTTAATGACATCCTCATCATTGATTGGTTTAGCAATTTCAAACAACACACTTCTTCGCTTCTTCCAATCTAGTAAGTTAAATTCTTGAGGGTTCGt                                                                                                      <  2:678663/141‑1 (MQ=255)
                                     aTGATCTCCAAGAATATTATTTAGTTCTTTAAAATCATCATTTGTTTTAATGACATCCTCATCATTGATTGGTTTAGCAATTTCAAACAACAAACTTCTTCGCTTCTTCCAATCTAGTAAGTTAAATGCTTGAGGGTTCGt                                                                                                      <  2:713254/141‑1 (MQ=255)
                                     aTGATCTCCAAGAATATTATTTAGTTCTTTAAAATCATCATTTGTTTTAATGACATCCTCATCATTGATTGGTTTAGCAATTTCAAACAACAAACTTCTTCGCTTCTTCCAATCTAGTAAGTTAAATGCTTGAGGGTTCGt                                                                                                      <  2:774323/141‑1 (MQ=255)
                                       gATCTCCAAGAATATTATTTAGTTCTTTAAAATCATCATTTGTTTTAATGACATCCTCATCATTGATTGGTTTAGCAATTTCAAACAACAAACTTCTTCGCTTCTTCCAATCTAGTAAGTTAAATGCTTGAGGGTTCGTaa                                                                                                    >  2:968891/1‑141 (MQ=255)
                                       gATCTCCAAGAATATTATTTAGTTCTTTAAAATCATCATTTGTTTTAATGACATCCTCATCATTGATTGGTTTAGCAATTTCAAACAACAAACTTCTTCGCTTCTTCCAATCTAGTAAGTTAAATGCTTGAGGGTTCGTaa                                                                                                    >  1:827611/1‑141 (MQ=255)
                                       gATCTCCAAGAATAGTATTTAGTTCTTTAAAATCATCATTTGTTTTAATGACATCCTCATCATTGATTGGTTTAGCAATTTCAAACAACAAACTTCTTCGCTTCTTCCAATCTAGTAAGTTAAATGCTTGAGGGTTCGTaa                                                                                                    <  2:358070/141‑1 (MQ=255)
                                        aTCTCCAAGAATATTATTTAGTTCTTTAAAATCATCATTTGTTTTAATGACATCCTCATCATTGATTGGTTTAGCAATTTCAAACAACAAACTTCTTCGCTTCTTCCAATCTAGTAAGTTAAATGCTTGAGGGTTCGTAAt                                                                                                   <  2:127466/141‑1 (MQ=255)
                                         tctcCAAGAATATTATTTAGTTCTTTAAAATCATCATTTGTTTTAATGACATCCTCATCATTGATTGGTTTAGCAATTTCAAACAACAAACTTCTTCGCTTCTTCCAATCTAGTAAGTTAAATGCTTGAGGGTTCGTAAtt                                                                                                  >  1:686918/1‑141 (MQ=255)
                                           tcCAAGAATATTATTTAGTTCTTTAAAATCATCATTTGTTTTAATGACATCCTCATCATTGATTGGTTTAGCAATTTCAAACAACAAACTTCTTCGCTTCTTCCAATCTAGTAAGTTAAATGCTTGAGGGTTCGTAATTaa                                                                                                <  2:268803/141‑1 (MQ=255)
                                             cAAGAATATTATTTAGTTCTTTAAAATCATCATTTGTTTTAATGACATCCTCATCATTGATTGGTTTAGCAATTTCAAACAACAAACTTCTTCGCTTCTTCCAATCTAGTAAGTTAAATGCTTGAGGGTTCGTAATTAACt                                                                                              >  2:391838/1‑141 (MQ=255)
                                                 aaTATTATTTAGTTCTTTAAAATCATCATTTGTTTTAATGACATCCTCATCATTGATTGGTTTAGCAATTTCAAACAACAAACTTCTTCGCTTCTTCCAATCTAGTAAGTTAAATGCTTGAGGGTTCGTAATTAACTTGaa                                                                                          <  1:900534/141‑1 (MQ=255)
                                                  atatTATTTAGTTCTTTAAAATCATCATTTGTTTTAATGACATCCTCATCATTGATTGGTTTAGCAATTTCAAACAACAAACTTCTTCGCTTCTTCCAATCTAGTAAGTTAAATGCTTGAGGGTTCGTAATTAACTTGAAt                                                                                         >  2:468615/1‑141 (MQ=255)
                                                     ttattTAGTTCTTTAAAATCATCATTTGTTTTAATGACATCCTCATCATTGATTGGTTTAGCAATTTCAAACAACAAACTTCTTCGCTTCTTCCAATCTAGTAAGTTAAATGCTTGAGGGTTCGTAATTAACTTGAATACa                                                                                      >  2:1022557/1‑141 (MQ=255)
                                                          tAGTTCTTTAAAATCATAATTTGTTTTAATGACATCCTCATCATTGATTGGTTTAGCAATTTCAAACAACAAACTTCTTCGCTTCTTCCAATCTAGTAAGTTAAATGCTTGAGGGTTCGTAATTAACTTGAATACATCTtc                                                                                 <  2:920438/141‑1 (MQ=255)
                                                             ttCTTTAAAATCATCATTTGTTTTAATGACATCCTCATCATTGATTGGTTTAGCAATTTCAAACAACAAACTTCTTCGCTTCTTCCAATCTAGTAAGTTAAATGCTTGAGGGTTCGTAATTAACTTGAATACATCTtcatc                                                                              <  2:796188/141‑1 (MQ=255)
                                                             ttCTTTAAAATCATCATTTGTTTTAATGACATCCTCATCATTGATTGGTTTAGCAATTTCAAACAACAAACTTCTTCGCTTCTTCCAATCTAGTAAGTTAAATGCTTGAGGGTTCGTAATTAACTTGAATACATCTtcatc                                                                              <  1:751690/141‑1 (MQ=255)
                                                              tCTTTAAAATCATCATTTGTTTTAATGACATCCTCATCATTGATTGGTTTAGCAATTTCAAACAACAAACTTCTTCGCTTCTTCCAATCTAGTAAGTTAAATGCTTGAGGGTTCGTAATTAACTTGAATACATCTtcatca                                                                             >  2:274942/1‑141 (MQ=255)
                                                               cTTTAAAATCATCATTTGTTTTAATGACATCCTCATCATTGATTGGTTTAGCAATTTCAAACAACAAACTTCTTCGCTTCTTCCAATCTAGTAAGTTAAATGCTTGAGGGTTCGTAATTAACTTGAATACATCTTCATCaa                                                                            <  1:542684/141‑1 (MQ=255)
                                                               cTTTAAAATCATCATTTGTTTTAATGACATCCTCATCATTGATTGGTTTAGCAATTTCAAACAACAAACTTCTTCGCTTCTTCCAATCTAGTAAGTTAAATGCTTGAGGGTTCGTAATTAACTTGAATACATCTTCATCaa                                                                            >  1:133488/1‑141 (MQ=255)
                                                               cTTTAAAATCATCATTTGTTTTAATGACATCCTCATCATTGATTGGTTTAGCAATTTCAAACAACAAACTTCTTCGCTTCTTCCAATCTAGTAAGTTAAATGCTTGAGGGTTCGTAATTAACTTGAATACATCTTCATCaa                                                                            <  2:534972/141‑1 (MQ=255)
                                                                    aaaTCATCATTTGTTTTAATGACATCCTCATCATTGATTGGTTTAGCAATTTCAAACAACAAACTTCTTCGCTTCTTCCAATCTAGTAAGTTAAATGCTTGAGGGTTCGTAATTAACTTGAATACATCTTCATCAATAAGt                                                                       >  2:346533/1‑141 (MQ=255)
                                                                     aaTCATCATTTGTTTTAATGACATCCTCATCATTGATTGGTTTAGCAATTTCAAACAACAAACTTCTTCGCTTCTTCCAATCTAGTAAGTTAAATGCTTGAGGGTTCGTAATTAACTTGAATACATCTTCATCAATAAGtt                                                                      >  1:1073000/1‑141 (MQ=255)
                                                                      atcatcATTTGTTTTAATGACATCCTCATCATTGATTGGTTTAGCAATTTCAAACAACAAACTTCTTCGCTTCTTCCAATCTAGTAAGTTAAATGCTTGAGGGTTCGTAATTAACTTGAATACATCTTCATCAATAAGTtc                                                                     >  2:643150/1‑141 (MQ=255)
                                                                             tttGTTTTAATGACATCCTCATCATTGATTGGTTTAGCGATTTCAAACAACAAACTTCTTCGTTTCTTCCAATCTAGTAAGTTAAATGCTTGAGGGTTCGTAATTAACTTGAATACATCTTCATCAATCAGTTCATCAATa                                                              <  2:370734/141‑1 (MQ=255)
                                                                             tttGTTTTAATGACATCCTCATCATTGATTGGTTTAGCAATTTCAAACAACAAACTTCTTCGCTTCTTCCAATCTAGTAAGTTAAATGCTTGAGGGTTCGTAATTAACTTGAATACATCTTCATCAATAAGTTCATCAATa                                                              <  2:943062/141‑1 (MQ=255)
                                                                                  tttAATGACATCCTCATCATTGATTGGTTTAGCAATTTCAAACAACAAACTTCTTCGCTTCTTCCAATCTAGTAAGTTAAATGCTTGAGGGTTCGTAATTAACTTGAATACATCTTCATCAATAAGTTCATCAATACGAGc                                                         <  2:1055297/141‑1 (MQ=255)
                                                                                  tttAATGACATCCTCATCATTGATTGGTTTAGCAATTTCAAACAACAAACTTCTTCGCTTCTTCCAATCTAGTAAGTTAAATGCTTGAGGGTTCGTAATTAACTTGAATACATCTTCATCAATAAGTTCATCAATACGAGc                                                         <  1:850497/141‑1 (MQ=255)
                                                                                   ttAATGACATCCTCATCATTGATTGGTTTAGCAATTTCAAACAACAAACTTCTTCGCTTCTTCCAATCTAGTAAGTTAAATGCTTGAGGGTTCGTAATTAACTTGAATACATCTTCATCAATAAGTTCATCAATACGAGCt                                                        >  1:1068023/1‑141 (MQ=255)
                                                                                    tAATGACATCCTCATCATTGATTGGTTTAGCAATTTCAAACAACAAACTTCTTCGCTTCTTCCAATCTAGTAAGTTAAATGCTTGAGGGTTCGTAATTAACTTGAATACATCTTCATCAATAAGTTCATCAATACGAGCtt                                                       >  2:1061571/1‑141 (MQ=255)
                                                                                     aaTGACATCCTCATCATTGATTGGTTTAGCAATTTCAAACAACAAACTTCTTCGCTTCTTCCAATCTAGTAAGTTAAATGCTTGAGGGTTCGTAATTAACTTGAATACATCTTCATCAATAAGTTCATCAATACGAGCttt                                                      >  1:980411/1‑141 (MQ=255)
                                                                                      aTGACATCCTCATCATTGATTGGTTTAGCAATTTCAAACAACAAACTTCTTCGCTTCTTCCAATCTAGTAAGTTAAATGCTTGAGGGTTCGTAATTAACTTGAATACATCTTCATCAATAAGTTCATCAATACGAGCTTta                                                     >  1:101617/1‑141 (MQ=255)
                                                                                      aTGACATCCTCATCATTGATTGGTTTAGCAATTTCAAACAACAAACTTCTTCGCTTCTTCCAATCTAGTAAGTTAAATGCTTGAGGGTTCGTAATTAACTTGAATACATCTTCATCAATAAGTTCATCAATACGAGCTTta                                                     >  1:876724/1‑141 (MQ=255)
                                                                                        gACATCCTCATCATTGATTGGTTTAGCAATTTCAAACAACAAACTTCTTCGCTTCTTCCAATCTAGTAAGTTAAATGCTTGAGGGTTCGTAATTAACTTGAATACATCTTCATCAATAAGTTCATCAATACGAGCTTtata                                                   >  1:262379/1‑141 (MQ=255)
                                                                                          cATCCTCATCATTGATTGGTTTAGCGATTTCAAACAACAAACTTCTTCGTTTCTTCCAATCTAGTAAGTTAAATGCTTGAGGGTTCGTAATTAACTTGAATACATCTTCATCAATCAGTTCATCAATACGAGCTTTATAAt                                                 <  2:287453/141‑1 (MQ=255)
                                                                                          cATCCTCATCATTGATTGGTTTAGCAATTTCAAACAACAAACTTCTTCGCTTCTTCCAATCTAGTAAGTTAAATGCTTGAGGGTTCGTAATTAACTTGAATACATCTTCATCAATAAGTTCATCAATACGAGCTTTATAAt                                                 <  1:345784/141‑1 (MQ=255)
                                                                                                catcatTGATTGGTTTAGCGATTTCAAACAACAAACTTCTTCGTTTCTTCCAATCTAGTAAGTTAAATGCTTGAGGGTTCGTAATTAACTTGAATACATCTTCATCAATCAGTTAATCAATACGAGCTTTATAATCCTTTa                                           >  2:860462/1‑141 (MQ=255)
                                                                                                  tcatTGATTGGTTTAGCAATTTCAAACAACAAACTTCTTCGCTTCTTCCAATCTAGTAAGTTAAATGCTTGAGGGTTCGTAATTAACTTGAATACATCTTCATCAATAAGTTCATCAATACGAGCTTTATAATCCTTTACt                                         >  2:297568/1‑141 (MQ=255)
                                                                                                    attgattgGTTTAGCAATTTCAAACAACAAACTTCTTCGCTTCTTCCAATCTAGTAAGTTAAATGCTTGAGGGTTCGTAATTAACTTGAATACATCTTCATCAATAAGTTCATCAATACGAGCTTTATAATCCTTTACttt                                       >  1:138491/1‑141 (MQ=255)
                                                                                                      tgattgGTTTAGCAATTTCAAACAACAAACTTCTTCGCTTCTTCCAATCTAGTAAGTTAAATGCTTGAGGGTTCGTAATTAATTTGAATACATCTTCATCAATAAGTTCATCAATACGAGCTTTATAATCCTTTACTTTTa                                     >  1:213770/1‑141 (MQ=255)
                                                                                                        attgGTTTAGCGATTTCAAACAACAAACTTCTTCGTTTCTTCCAATCTAGTAAGTTAAATGCTTGAGGGTTCGTAATTAACTTGAATACATCTTCATCAATCAGTTCATCAATACGAGCTTTATAATCCTTTACTTTTAtt                                   >  2:35391/1‑141 (MQ=255)
                                                                                                          tgGTTTAGCAATTTCAAACAACAAACTTCTTCGCTTCTTCCAATCTAGTAAGTTAAATGCTTGAGGGTTCGTAATTAACTTGAATACATCTTCATCAATAAGTTCATCAATACGAGCTTTATAATCCTTTACTTTTATTGa                                 <  1:186971/141‑1 (MQ=255)
                                                                                                          tgGTTTAGCAATTTCAAACAACAAACTTCTTCGCTTCTTCCAATCTAGTAAGTTAAATGCTTGAGGGTTCGTAATTAACTTGAATACATCTTCATCAATAAGTTCATCAATACGAGCTTTATAATCCTTTACTTTTATTGa                                 <  2:327097/141‑1 (MQ=255)
                                                                                                          gggTTTAGCAATTTCAAACAACAAACTTCTTCGCTTCTTCCAATCTAGTAAGTTAAATGCTTGAGGGTTCGTAATTAACTTGAATACATCTTCATCAATAAGTTCATCAATACGAGCTTTATAATCCTTTACTTTTATTGa                                 <  1:596011/140‑1 (MQ=255)
                                                                                                             tttAGCAATTTCAAACAACAAACTTCTTCGCTTCTTCCAATCTAGTAAGTTAAATGCTTGAGGGTTCGTAATTAACTTGAATACATCTTCATCAATAAGTTCATCAATACGAGCTTTATAATCCTTTACTTTTATTGATtc                              <  2:226718/141‑1 (MQ=255)
                                                                                                             tttAGCAATTTCAAACAACAAACTTCTTCGCTTCTTCCAATCTAGTAAGTTAAATGCTTGAGGGTTCGTAATTAACTTGAATACATCTTCATCAATAAGTTCATCAATACGAGCTTTATAATCCTTTACTTTTATTGATtc                              <  1:390693/141‑1 (MQ=255)
                                                                                                                 gCAATTTCAAACAACAAACTTCTTCGCTTCTTCCAATCTAGTAAGTTAAATGCTTGAGGGTTCGTAATTAACTTGAATACATCTTCATCAATAAGTTCATCAATACGAGCTTTATAATCCTTTACTTTTATTGATtcatca                          <  1:83055/141‑1 (MQ=255)
                                                                                                                 gCAATTTCAAACAACAAACTTCTTCGCTTCTTCCAATCTAGTAAGTTAAATGCTTGAGGGTTCGTAATTAACTTGAATACATCTTCATCAATAAGTTCATCAATACGAGCTTTATAATCCTTTACTTTTATTGATtcatca                          >  2:1025817/1‑141 (MQ=255)
                                                                                                                     tttCAAACAACAAACTTCTTCGCTTCTTCCGATCTAGTAAGTTAAATGCTTGAGGGTTCGTAATTAACTTGAATACATCTTCATCAATAAGTTCATCAATACGAGCTTTATAATCCTTTACTTTTATTGATTCATCATTGa                      <  2:564962/141‑1 (MQ=255)
                                                                                                                         aaaCAACAAACTTCTTCGCTTCTTCCAATCTAGTAAGTTAAATGCTTGAGGGTTCGTAATTAACTTGAATACATCTTCATCAATCAGTTCATCAATACGAGCTTTATAATCCTTTACTTTTATTGATTCATCATTGatata                  <  1:468615/141‑1 (MQ=255)
                                                                                                                         aaaCAACAAACTTCTTCGCTTCTTCCAATCTAGTAAGTTAAATGCTTGAGGGTTCGTAATTAACTTGAATACATCTTCATCAATAAGTTCATCAATACGAGCTTTATAATCCTTTACTTTTATTGATTCATCATTGatata                  <  2:349059/141‑1 (MQ=255)
                                                                                                                          aacaacAAACTTCTTCGCTTCTTCCAATCTAGTAAGTTAAATGCTTGAGGGTTCGTAATTAACTTGAATACATCTTCATCAATAAGTTCATCAATACGAGCTTTATAATCCTTTACTTTTATTGATTCATCATTGatatat                 <  1:346533/141‑1 (MQ=255)
                                                                                                                          aacaacAAACTTCTTCGCTTCTTCCAATCTAGTAAGTTAAATGCTTGAGGGTTCGTAATTAACTTGAATACATCTTCATCAATAAGTTCATCAATACGAGCTTTATAATCCTTTACTTTTATTGATTCATCATTGatatat                 <  2:120337/141‑1 (MQ=255)
                                                                                                                           acaacaAACTTCTTCGCTTCTTCCAATCTAGTAAGTTAAATGCTTGAGGGTTCGTAATTAACTTGAATACATCTTCATCAATAAGTTCATCAATACGAGCTTTATAATCCTTTACTTTTATTGATTCATCATTGATATAtt                >  1:551455/1‑141 (MQ=255)
                                                                                                                             aacaaACTTCTTCGCTTCTTCCAATCTAGTAAGTTAAATGCTTGAGGGTTCGTAATTAACTTGAATACATCTTCATCAATAAGTTCATCAATACGAGCTTTATAATCCTTTACTTTTATTGATACATCATTGAAATATTGt              >  1:193910/1‑141 (MQ=255)
                                                                                                                              acaaACTTCTTCGCTTCTTCCAATCTAGTAAGTTAAATGCTTGAGGGTTCGTAATTAACTTGAATACATCTTCATCAATAAGTTCATCAATACGAGCTTTATAATCCTTTACTTTTATTGATTCATCATTGATATATTGtt             <  2:106769/141‑1 (MQ=255)
                                                                                                                                aaaCTTCTTCGCTTCTTCCAATCTAGTAAGTTAAATGCTTGAGGGTTCGTAATTAACTTGAATACATCTTCATCAATAAGTTCATCAATACGAGCTTTATAATCCTTTACTTTTATTGATTCATCATTGATATATTGTttc           <  2:948337/141‑1 (MQ=255)
                                                                                                                                aaaCTTCTTCGCTTCTTCCAATCTAGTAAGTTAAATGCTTGAGGGTTCGTAATTAACTTGAATACATCTTCATCAATAAGTTCATCAATACGAGCTTTATAATCCTTTACTTTTATTGATTCATCATTGATATATTGTttc           <  1:125614/141‑1 (MQ=255)
                                                                                                                                 aaCTTCTTCGCTTCTTCCAATCTAGTAAGTTAAATGCTTGAGGGTTCGTAATTAACTTGAATACATCTTCATCAATAAGTTCATCAATACGAGCTTTATAATCCTTTACTTTTATTGATTCATCATTGATATATTGTttct          <  2:32728/141‑1 (MQ=255)
                                                                                                                                  aCTTCTTCGCTTCTTCCAATCTAGTAAGTTAAATGCTTGAGGGTTCGTAATTAACTTGAATACATCTTCATCAATAAGTTCATCAATACGAGCTTTATAATCCTTTACTTTTATTGATTCATCATTGATATATTGTttctt         >  1:465849/1‑141 (MQ=255)
                                                                                                                                    ttcttcGCTTCTTCCAATCTAGTAAGTTAAATGCTTGAGGGTTCGTAATTAACTTGAATACATCTTCATCAATAAGTTCATCAATACGAGCTTTATAATCCTTTACTTTTATTGATTCATCATTGATATATTGTttcttct       >  2:752292/1‑140 (MQ=255)
                                                                                                                                    ttcttcGCTTCTTCCAATCTAGTAAGTTAAATGCTTGAGGGTTCGTAATTAACTTGAATACATCTTCATCAATAAGTTCATCAATACGAGCTTTATAATCCTTTACTTTTATTGATTCATCATTGATATATTGTTTCttcg       <  1:508806/141‑1 (MQ=255)
                                                                                                                                        tcGCTTCTTCCAATCTAGTAAGTTAAATGCTTGAGGGTTCGTTATTAACTTGAATACATCTTCATCAATAAGTTCATCAATACGAGCTTTATAATCCTTTACTTTTATTGATTCATCATTGATATATTGTTTCttcgttcg   <  2:1036663/141‑1 (MQ=255)
                                                                                                                                        tcGCTTCTTCCAATCTAGTAAGTTAAATGCTTGAGGGTTCGTAATTAACTTGAATACATCTTCATCAATAAGTTCATCAATACGAGCTTTATAATCCTTTACTTTTATTGATTCATCATTGATATATTGTTTCttcgttcg   <  2:662537/141‑1 (MQ=255)
                                                                                                                                         cGCTTCTTCCAATCTAGTAAGTTAAATGCTTGAGGGTTCGTAATTAACTTGAATACATCTTCATCAATAAGTTCATCAATACGAGCTTTATAATCCTTTACTTTTATTGATTCATCATTGATATATTGTTTCTTCGTTCGa  >  1:922950/1‑141 (MQ=255)
                                                                                                                                           |                                                                                                                                          
TCTTGTCCGTAAGAATCTTTTTCTTTGTTTCAATTTCATGATCTCCAAGAATATTATTTAGTTCTTTAAAATCATCATTTGTTTTAATGACATCCTCATCATTGATTGGTTTAGCAATTTCAAACAACAAACTTCTTCGCTTCTTCCAATCTAGTAAGTTAAATGCTTGAGGGTTCGTAATTAACTTGAATACATCTTCATCAATAAGTTCATCAATACGAGCTTTATAATCCTTTACTTTTATTGATTCATCATTGATATATTGTTTCTTCGTTCGA  >  CP000730/2119618‑2119895

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑