Predicted mutation
evidence	seq id	position	mutation	freq	annotation	gene	description
RA	CP000730	2,257,078	A→G	6.3%	intergenic (‑167/+33)	dps ← / ← yuxK	Dps family stress protein/hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	CP000730	2,257,078	0	A	G	6.3%	254.2 / 4.2	91	intergenic (‑167/+33)	dps/yuxK	Dps family stress protein/hypothetical protein
Reads supporting (aligned to +/- strand):  ref base A (50/35);  new base G (2/4);  total (52/39)
Fisher's exact test for biased strand distribution p-value = 3.96e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

ACGTCTTGCTTGTTTATATTAATTATTATATTATAATAATTTTAATCTGTAAAGTGTTTTTGCTCTCTTTTTTATAATTATTCTAATCTAACCGTAAAGTGTTCCGCTATTTAAATGCCTAAATTTTAATTCATCATCTAATATATCCATTATCAATTAGCAAGTATGTTTTATCAATCAGTAAGTTTTACTTTCGCATTATCATCTAAAAAGAACGATTTTTCATAATCATTTGGTTGGTGCCATGTTGTTTTCCACATTCTATTTCTATTATTAGCAA  >  CP000730/2256938‑2257217                                                                                                                                             |                                                                                                                                            aCGTCTTGCTTGTTTATATTAATTATTATATTATAATAATTTTAATCTGTAAAGTGTTTTTGCTCTCTTTTTTATAATTATTCTAATCTAACCGTAAAGTGTTCCGCTATTTAAATGCCTAAATTTTAATTCATCATCTaa                                                                                                                                             <  1:331923/141‑1 (MQ=255)    tcatgcatgTTTATATAAATTATCATATAATAATACTTTTAATATGTAAAGTGTTTTTGCTATCTTTTTTATAATTATTATAATCTAACCGTAAAGTGTTCCGCTATTTACATGACTAATTTTTAATTAATCATCTCatat                                                                                                                                          >  2:267862/4‑141 (MQ=255)     cttgcttgTTTATATTAATTATTATATTATAATAATTTTAATCTGTAAAGTGTTTTTGCTCTCTTTTTTATAATTATTCTAATCTAACCGTAAAGTGTTCCGCTATTTAAATGCCTAAATTTTAATTCATCATCTAatata                                                                                                                                         <  1:127337/141‑1 (MQ=255)     cttgcttgTTTATATTAATTATTATATTATAATAATTTTAATCTGTAAAGTGTTTTTGCTCTCTGTTTTATAATTATTCTAATCTAACCGTAAAGTGTTCCGCTATTTAAATGCCTAAATTTTAATTCATCATCTAatata                                                                                                                                         <  1:154708/141‑1 (MQ=255)      ttgcttgTTTATATTAATTATTATATTATAATAATTTTAATCTGTAAAGTGTTTTTGCTCTCTTTTTTATAATTATTCTAATCTAACCGTAAAGTGTTCCGCTATTTAAATGCCTAAATTTTAATTCATCATCTAatatat                                                                                                                                        <  1:505867/141‑1 (MQ=255)       tgcttgTTTATATTAATTATTATATTATAATAATTTTAATCTGTAAAGTGTTTTTTTTTTTTTTTTTATAATTATTCTAATCTAACCGTAAAGTGTTCCGCTATTTAAATGCCTAAATTTTAATTCATCATCTAATATATc                                                                                                                                       >  2:265164/1‑141 (MQ=255)         cttgTTTATATTAATTATTATATTATAATAATTTTAATCTGTAAAGTGTTTTTGCTCTCTTTTTTATAATTATTCTAATCTAACCGTAAAGTGTTCCGCTATTTAAATGCCTAAATTTTAATTCATCATCTAATATATCCa                                                                                                                                     <  1:96889/141‑1 (MQ=255)          ttgTTTATATTAATTATTATATTATAATAATTTTAATCTGTAAAGTGTTTTTGCTCTCTTTTTTATAATTATTCTAATCTAACCGTAAAGTGTTCCGCTATTTAAATGCCTAAATTTTAATTCATCATCTAATATATCCAt                                                                                                                                    <  2:841619/141‑1 (MQ=255)          ttgTTTATATTAATTATTATATTATAATAATTTTAATCTGTAAAGTGTTTTTGCTCTCTTTTTTATAATTATTCTAATCTAACCGTAAAGTGTTCCGCTATTTAAATGCCTAAATTTTAATTCATCATCTAATATATCCAt                                                                                                                                    >  2:619224/1‑141 (MQ=255)            gTTTATATTAATTATTATATTATAATAATTTTAATCTGTAAAGTGTTTTTGCTCTCTTTTTTATAATTATTCTAATCTAACCGTAAAGTGTTCCGCTATTTAAATGCCTAAATTTTAATTCATCATCTAATATATCCATTa                                                                                                                                  >  1:1050241/1‑141 (MQ=255)              ttATATTAATTATTATATTATAATAATTTTAATCTGTAAAGTGTTTTTGCTCTCTTTTTTATAATTATTCTAATCTAACCGTAAAGTGTTCCGCTATTTAAATGCCTAAATTTTAATTCATCATCTAATATATCCATTATc                                                                                                                                >  1:734242/1‑141 (MQ=255)              ttATATTAATTATTATATTATAATAATTTTAATCTGTAAAGTGTTTTTGCTCTCTTTTTTATAATTATTCTAATCTAACCGTAAAGTGTTCCGCTATTTAAATGCCTAAATTTTAATTCATCATCTAATATATCCATTATc                                                                                                                                >  2:589955/1‑141 (MQ=255)                   ttaattaTTATATTATAATAATTTTAATCTGTAAAGTGTTTTTGCTCTCTTTTTTATAATTATTCTAATCTAACCGTAAAGTGTTCCGCTATTTAAATGCCTAAATTTTAATTCATCATCTAATATATCCATTATCAATTa                                                                                                                           >  1:394137/1‑141 (MQ=255)                    taattaTTATATTATAATAATTTTAATCTGTAAAGTGTTTTTGCTCTCTTTTTTATAATTATTCTAATCTAACCGTAAAGTGTTCCGCTATTTAAATGCCTAAATTTTAATTCATCATCTAATATATCCATTATCAATTAg                                                                                                                          >  1:446140/1‑141 (MQ=255)                     aattaTTATATTATAATAATTTTAATCTGTAAAGTGTTTTTGCTCTTTTTTTTATAATTATTCTAATCTAACCGTAAAGTGTTCCGCTATTTAAATGCCTAAATTTTAATTCATCATCTAATATATCCATTATCAATTAGc                                                                                                                         >  2:165202/1‑141 (MQ=255)                     aattaTTATATTATAATAATTTTAATCTGTAAAGTGTTTTTGCTCTCTTTTTTATAATTATTCTAATCTAACCGTAAAGTGTTCCGCTATTTAAATGCCTAAATTTTAATTCATCATCTAATATATCCATTATCAATTAGc                                                                                                                         <  1:986818/141‑1 (MQ=255)                     aattaTTATATTATAATAATTTTAATCTGTAAAGTGTTTTTGCTCTCTTTTTTATAATTATTCTAATCTAACCGTAAAGTGTTCCGCTATTTAAATGCCTAAATTTTAATTCATCATCTAATATATCCATTATCAATTAGc                                                                                                                         >  1:225867/1‑141 (MQ=255)                     aattaTTATATTATAATAATTTTAATCTGTAAAGTGTTTTTGCTCTCTTTTTTATAATTATTCTAATCTAACCGTAAAGTGTTCCGCTATTTAAATGCCTAAATTTTAATTCATCATCTAATATATCCATTATCAATTAGc                                                                                                                         <  1:494549/141‑1 (MQ=255)                     aattaTTATATTATAATAATTTTAATCTGTAAAGTGTTTTTGCTCTCTTTTTTATAATTATTCTAATCTAACCGTAAAGTGTTCCGCTATTTAAATGCCTAAATTTTAATTCATCATCTAATATATCCATTATCAATTAGc                                                                                                                         <  1:557265/141‑1 (MQ=255)                      attattATATTATAATAATTTTAATCTGTAAAGTGTTTTTTTTCTTTTTTTTATAATTATTCTAATCTAACCGTAAAGTGTTCCGCTATTTAAATGCCTAAATTTTAATTCATCATCTAATATATCTATTATTAATTAGCa                                                                                                                        >  2:780684/1‑141 (MQ=255)                        tattatattaTAATGATTCTAATCTGTAAAGTGTTTTTACTCTCTTTTTTATAATTATTCTAATCTAAATGTAAGGTGTTCCGCTTTTTAAATGTCTAAATTTTAATTCATCATCTAGTATATCCATTATCAATTAGCAAg                                                                                                                      <  2:389920/141‑1 (MQ=255)                        tattatattaTAATAATTTTAATCTGTAAAGTGTTTTTGCTCTCTTTTTTATAATTATTCTAATCTAACCGTAAAGTGTTCCGCTATTTAAATGCCTAAATTTTAATTCATCATCTAATATATCCATTATCAATTAGCAAg                                                                                                                      <  2:119585/141‑1 (MQ=255)                        tattatattaTAATAATTTTAATCTGTAAAGTGTTTTTGCTCTCTTTTTTATAATTATTCTAATCTAACCGTAAAGTGTTCCGCTATTTAAATGCCTAAATTTTAATTCATCATCTAATATATCCATTATCAATTAGCAAg                                                                                                                      >  2:696338/1‑141 (MQ=255)                         attatattatAATAATTTTAATCTGTAAAGTGTTTTTGCTCTCTTTTTTATAATTATTCTAATCTAACCGTAAAGTGTTCCGCTATTTAAATGCCTAAATTTTAATTCATCATCTAATATATCCATTATCAATTAGCAAGt                                                                                                                     >  1:216415/1‑141 (MQ=255)                          ttatattataATAATTTTAATCTGTAAAGTGTTTTTGCTCTCTTTTTTATAATTATTCTAATCTAACCGTAAAGTGTTCCGCTATTTAAATGCCTAAATTTTAATTCATCATCTAATATATCCATTATCAATTAGCAAGTa                                                                                                                    <  1:916862/141‑1 (MQ=255)                           tatattataATAATTTTAATCTGTAAAGTGTTTTTGCTCTCTTTTTTATAATTATTCTAATCTAACCGTAAAGTGTTCCGCTATTTAAATGCCTAAATTTTAATTCATCATCTAATATATCCATTATCAATTAGCAAGTAt                                                                                                                   >  1:174164/1‑141 (MQ=255)                            atattataATAATTTTAATCTGTAAAGTGTTTTTGCTCTCTTTTTTATAATTATTCTAATCTAACCGTAAAGTGTTCCGCTATTTAAATGCCTAAATTTTAATTCATCATCTAATATATCCATTATCAATTAGCAAGTATg                                                                                                                  >  1:224975/1‑141 (MQ=255)                            atattataATAATTTTAATCTGTAAAGTGTTTTTGCTCTCTTTTTTATAATTATTCTAATCTAACCGTAAAGTGTTCCGCTATTTAAATGCCTAAATTTTAATTCATCATCTAATATATCCATTATCAATTAGCAAGTATg                                                                                                                  >  2:820838/1‑141 (MQ=255)                             tattataATAATTTTAATCTGTAAAGTGTTTTTGCTCTCTTTTTTATAATTATTCTAATCTAACCGTAAAGTGTTCCGCTATTTAAATGCCTAAATTTTAATTCATCATCTAATATATCCATTATCAATTAGCAAGTATGt                                                                                                                 <  2:607169/141‑1 (MQ=255)                              attataATAATTTTAATCTGTAAAGTGTTTTTGCTCTCTTTTTTATAATTATTCTAATCTAACCGTAAAGTGTTCCGCTATTTAAATGCCTAAATTTTAATTCATCATCTAATATATCCATTATCAATTAGCAAGTATGtt                                                                                                                >  1:1065190/1‑141 (MQ=255)                                  taataaTTTTAATCTGTAAAGTGTTTTTGCTCTCTTTTTTATAATTATTCTAATCT‑ACCGTAAAGTGTTCCGCTATTTAAATGCCTAAATTTTAATTCATCATCTAATATATCCATTATCAATTAGCAAGTATGTTTTatc                                                                                                           <  1:1060892/141‑1 (MQ=255)                                      aatTTTAATCTGTAAAGTGTTTTTGCTCTCTTTTTTATAATTATTCTAATCTAACCGTAAAGTGTTCCGCTATTTAAATGCCTAAATTTTAATTCATCATCTAATATATCCATTATCAATTAGCAAGTATGTTTTatcaat                                                                                                        >  1:663206/1‑141 (MQ=255)                                       atTTTAATCTGTAAAGTGTTTTTGCTCTCTTTTTTATAATTATTCTAATCTAACCGTAAAGTGTTCCGCTATTTACATAACCTAATTTTAATTCATCATCTAATATATCCATTATCAATTAGCAAGTATGTTTTatcaatc                                                                                                       >  1:565492/1‑141 (MQ=255)                                         tttAATCTGTAAAGTGTTTTTGCTCTCTTTTTTATAATTATTCTAATCTAACCGTAAAGTGTTCCGCTATTTAAATGCCTAAATTTTAATTCATCATCTAATATATCCATTATCAATTAGCAAGTATGTTTTATCAATCAg                                                                                                     <  1:6303/141‑1 (MQ=255)                                         tttAATCTGTAAAGTGTTTTTGCTCTCTTTTTTATAATTATTCTAATCTAACCGTAAAGTGTTCCGCTATTTAAATGCCTAAATTTTAATTCATCATCTAATATATCCATTATCAATTAGCAAGTATGTTTTATCAATCAg                                                                                                     <  2:646316/141‑1 (MQ=255)                                           tAATCTGTAAAGTGTTTTTGCTCTCTTTTTTATAATTATTCTAATCTAACCGTAAAGTGTTCCGCTATTTAAATGCCTAAATTTTAATTCATCATCTAATATATCCATTATCAATTAGCAAGTATGTTTTATCAATCAGTa                                                                                                   >  1:276561/1‑141 (MQ=255)                                            aaTCTGTAAAGTGTTTTTGCTCTCTTTTTTATAATTATTCTAATCTAACCGTAAAGTGTTCCGCTATTTAAATGCCTAAATTTTAATTCATCATCTAATATATCCATTATCAATTAGCAAGTATGTTTTATCAATCAGTaa                                                                                                  >  2:442020/1‑141 (MQ=255)                                            aaTCTGTAAAGTGTTTTTGCTCTCTTTTTTATAATTATTCTAATCTAACCGTAAAGTGTTCCGCTATTTAAATGCCTAAATTTTAATTCATCATCTAATATATCCATTATCAATTAGCAAGTATGTTTTATCAATCAGTaa                                                                                                  >  1:159007/1‑141 (MQ=255)                                            aaTCTGTAAAGTGTTTTTGCTCTCTTTTTTATAATTATTCTAATCTAACCGTAAAGTGTTCCGCTATTTAAATGCCTAAATTTTAATTCATCATCTAATATATCCATTATCAATTAGCAAGTATGTTTTATCAATCAGTaa                                                                                                  >  1:578636/1‑141 (MQ=255)                                            aaTCTGTAAAGTGTTTTTGCTCTCTTTTTTATAATTATTCTAATCTAACCGTAAAGTGTTCCGCTATTTAAATGCCTAAATTTTAATTCATCATCTAATATATCCATTATCAATTAGCAAGTATGTTTTATCAATCAGTaa                                                                                                  >  1:408088/1‑141 (MQ=255)                                             ttCTTTACAGTGTTTTTGCTCTCTTTTTTATAATTATTCTGATCTAACGGTAAAGTGTTTTGCTTTTTAATTGCCTAATTTTTATTTCTTCATCTAATATATCCATTATCAATTATCAATTTTGTTTTATCTATCAGTatt                                                                                                 >  2:481743/2‑139 (MQ=255)                                              tCTGTAAAGTGTTTTTGCTCTCTTTTTTATAATTATTCTAATCTAACCGTAAAGTGTTCCGCTATTTAAATGCCTAAATTTTAATTCATCATCTAATATATCCATTATCAATTAGCAAGTATGTTTTATCAATCAGTAAGt                                                                                                >  1:179697/1‑141 (MQ=255)                                               cTGTAAAGTGTTTTTGCTCTCTTTTTTATAATTATTCTAATCTAACCGTAAAGTGTTCCGCTATTTAAATGCCTAAATTTTAATTCATCATCTAATATATCCATTATCAATTAGCAAGTATGTTTTATCAATCAGTAAGtt                                                                                               >  1:746549/1‑141 (MQ=255)                                                tGTAAAGTGTTTTTGCTCTCTTTTTTATAATTATTCTAATCTAACCGTAAAGTGTTCCGCTATTTAAATGCCTAAATTTTAATTCATCATCTAATATATCCATTATCAATTAGCAAGTATGTTTTATCAATCAGTAAGttt                                                                                              >  2:623132/1‑141 (MQ=255)                                                 gTAAAGTGTTTTTGCTCTCTTTTTTTTAATTATTCTAATCTAACCGTAAAGTGTTCCGCTATTTAAATGCCTAAATTTTAATTCATCATCTAATATATCCATTATCAATTAGCAAGTATGTTTTATCATTTAGTAAGtttt                                                                                             >  2:465711/1‑141 (MQ=255)                                                 gTAAAGTGTTTTTGCTCTCTTTTTTATAATTATTCTAATCTAACCGTAAAGTGTTCCGCTATTTAAATGCCTAAATTTTAATTCATCATCTAATATATCCATTATCAATTAGCAAGTATGTTTTATCAATCAGTAAGtttt                                                                                             >  2:496258/1‑141 (MQ=255)                                                   aaaGTGTTTTTACTCTCTTTTTTATAATTATTCTAATCTAAATGTAAGGTGTTCCGCTTTTTAAATGTCTAAATTTTAATTCATCATCTAGTATATCCATTATCAATTAGCAAGTATGTTTTATCAATCAGTAAGTTTTAc                                                                                           <  2:459801/141‑1 (MQ=255)                                                      gtgtTTTTGCTCTCTTTTTTATAATTATTCTAATCTAACCGTAAAGTGTTCCGCTATTTAAATGCCTAAATTTTAATTCATCATCTAATATATCCATTATCAATTAGCAAGTATGTTTTATCAATCAGTAAGTTTTACttt                                                                                        <  2:276561/141‑1 (MQ=255)                                                      gtgtTTTTGCTCTCTTTTTTATAATTATTATAATCTAACCGTAAAGTGTTCCGCTATTTAAATGCCTAAATTTTAATTCATCATCTAATATATCCATTATCAATTAGCAAGTATGTTTTATCAATCAGTAAGTTTTACttt                                                                                        >  1:303182/1‑141 (MQ=255)                                                         tttttGCTCTCTTTTTTATAATTATTCTAATCTAACCGTAAAGTGTTCCGCTATTTAAATGCCTAAATTTTAATTCATCATCTAATATATCCATTATCAATTAGCAAGTATGTTTTATCAATCAGTAAGTTTTACTTTCGc                                                                                     <  1:6214/141‑1 (MQ=255)                                                         tttttGCTCTCTTTTTTATAATTATTCTAATCTAACCGTAAAGTGTTCCGCTATTTAAATGCCTAAATTTTAATTCATCATCTAATATATCCATTATCAATTAGCAAGTATGTTTTATCAATCAGTAAGTTTTACTTTCGc                                                                                     <  2:898146/141‑1 (MQ=255)                                                          ttttGCTCTCTTTTTTTTTTTTTTTTTAATCTAACCGTAAAGTGTTCCGCTATTTAAATGCCTAAATTTTAATTCATCATCTAATATATCCATTATCAATTAGCAAGTATGTTTTTTTTATTTGTAATTTTTACTTTCGCa                                                                                    >  2:824989/1‑141 (MQ=255)                                                           tttGCTCTCTTTTTTATAATTATTCTAATCTAACCGTAAAGTGTTCCGCTATTTAAATGCCTAAATTTTAATTCATCATCTAATATATCCATTATCAATTAGCAAGTATGTTTTATCAATCAGTAAGTTTTACTTTCGCAt                                                                                   >  1:63358/1‑141 (MQ=255)                                                           tttGCTCTCTTTTTTATAATTATTCTAATCTAACCGTAAAGTGTTCCGCTATTTAAATGCCTAAATTTTAATTCATCATCTAATATATCCATTATCAATTAGCAAGTATGTTTTATCAATCAGTAAGTTTTACTTTCGCAt                                                                                   >  1:279132/1‑141 (MQ=255)                                                           tttGCTCTCTTTTTTATAATTATTCTAATCTAACCGTAAAGTGTTCCGCTATTTAAATGCCTAAATTTTAATTCATCATCTAATATATCCATTATCAATTAGCAAGTATGTTTTATCAATCAGTAAGTTTTACTTTCGCAt                                                                                   >  1:352787/1‑141 (MQ=255)                                                            ttGCTCTCTTTTTTATAATTATTCTACTCTAACCGTAAAGTGTTCCGCTATTTAAATGCCTAAATTTTAATTCATCATCTAATATATCCATTATCAATTAGCAAGTATGTTTTATCAATCAGTAAGTTTTACTTTCGCAtt                                                                                  <  2:1053417/141‑1 (MQ=255)                                                              gCTCTCTTTTTTATAATTATTCTAATCTAACCGTAAAGTGTTCCGCTATTTAAATGCCTAAATTTTAATTCATCATCTAATATATCCATTATCAATTAGCAAGTATGTTTTATCAATCAGTAAGTTTTACTTTCGCATTat                                                                                <  2:62217/141‑1 (MQ=255)                                                               ctctctTTTTTATAATTATTCTAATCTAACCGTAAAGTGTTCCGCTATTTAAATGCCTAAATTTTAATTCATCATCTAATATATCCATTATCAATTAGCAAGTATGTTTTATCAATCAGTAAGTTTTACTTTCGCATTatc                                                                               <  2:214786/141‑1 (MQ=255)                                                                tctctTTTTTATAATTATTCTAATCTAACCGTAAAGTGTTCCGCTATTTAAATGCCTAAATTTTAATTCATCATCTAATATATCCATTATCAATTAGCAAGTATGTTTTATCAATCAGTAAGTTTTACTTTCGCATTatca                                                                              >  1:400665/1‑141 (MQ=255)                                                                   ctTTTTTATAATTATTCTAATCTAACCGTAAAGTGTTCCGCTATTTAAATGCCTAAATTTTAATTCATCATCTAATATATCCATTATCAATTAGCAAGTATGTTTTATCAATCAGTAAGTTTTACTTTCGCATTATCATCt                                                                           >  1:34000/1‑141 (MQ=255)                                                                    ttttttATAATTATTCTAATCTAACCGTAAAGTGTTCCGCTATTTAAATGCCTAAATTTTATTTCATCATTTAATATATCTTTTTTCAATTAGCAAGTATGTTTTATCAATCAGTAAGTTTTACTTTCGCATTATCATCTa                                                                          >  2:329758/1‑141 (MQ=255)                                                                       tttATAATTATTCTAATCTAAATGTAAGGTGTTCCGCTTTTTAAATGTCTAAATTTTAATTCATCATCTAGTATATCCATTATCAATTAGCAAGTATGTTTTATCAATCAGTAAGTTTTACTTTCGCATTATCATCTaaaa                                                                       >  2:482747/1‑141 (MQ=255)                                                                        ttATAATTATTCTAATCTAACCGTAAAGTGTTCCGCTATTTAAATGCCTAAATTTTAATTCATCATCTAATATATCCATTATCAATTAGCAAGTATGTTTTATCAATCAGTAAGTTTTACTTTCGCATTATCATCTaaaaa                                                                      <  2:129163/141‑1 (MQ=255)                                                                         tataATTATTCTAATCTAACCGTAAAGTGTTCCGCTATTTAAATGCCTAAATTTTAATTCATCATCTAATATATCCATTATCAATTAGCAAGTATGTTTTATCAATCAGTAAGTTTTACTTTCGCATTATCATCTAAAAAg                                                                     >  1:577664/1‑141 (MQ=255)                                                                            aaTTATTCTAATCTAAATGTAAGGTGTTCCGCTTTTTAAATGTCTAAATTTTAATTCATCATCTAGTATATCCATTATCAATTAGCAAGTATGTTTTATCAATCAGTAAGTTTTACTTTCGCATTATCATCTAAAAAGAAc                                                                  <  2:287512/141‑1 (MQ=255)                                                                                 ttCTAATCTAACCGTAAAGTGTTCCGCTATTTAAATGCCTAAATTTTAATTCATCATCTAATATATCCATTATCAATTAGCAAGTATGTTTTATCAATCAGTAAGTTTTACTTTCGCATTATCATCTAAAAAGAACGAttt                                                             <  1:265164/141‑1 (MQ=255)                                                                                     aatctaaCCGTAAAGTGTTCCGCTATTTAAATGCCTAAATTTTAATTCATCATCTAATATATCCATTATCAATTAGCAAGTATGTTTTATCAATCAGTAAGTTTTACTTTCGCATTATCATCTAAAAAGAACGATTTTTCa                                                         >  2:77411/1‑141 (MQ=255)                                                                                      atctaaCCGTAAAGTGTTCCGCTATTTAAATGCCTAAATTTTAATTCATCATCTAATATATCCATTATCAATTAGCAAGTATGTTTTATCAATCAGTAAGTTTTACTTTCGCATTATCATCTAAAAAGAACGATTTTTCAt                                                        <  1:268757/141‑1 (MQ=255)                                                                                            ccGTAAAGTGTTCCGCTATTTAAATGCCTAAATTTTAATTCATCATCTAATATATCCATTATCAATTAGCAAGTATGTTTTATCAATCAGTAAGTTTTACTTTCGCATTATCATCTAAAAAGAACGATTTTTCATAATCAt                                                  <  1:665722/141‑1 (MQ=255)                                                                                               tAAAGTGTTCCGCTATTTAAATGCCTAAATTTTAATTCATCATCTAATATATCCATTATCAATTAGCAAGTATGTTTTATCAATCAGTAAGTTTTACTTTCGCATTATCATCTAAAAAGAACGATTTTTCATAATCATttg                                               <  2:221384/141‑1 (MQ=255)                                                                                                aaaGTGTTCCGCTATTTAAATGCCTAAATTTTAATTCATCATCTAATATATCCATTATCAATTAGCAAGTATGTTTTATCAATCAGTAAGTTTTACTTTCGCATTATCATCTAAAAAGAACGATTTTTCATAATCATttgg                                              >  2:71518/1‑141 (MQ=255)                                                                                                 aaGTGTTCCGCTATTTAAATGCCTAAATTTTAATTCATCATCTAATATATCCATTATCAATTAGCAAGTATGTTTTATCAATCAGTAAGTTTTACTTTCGCATTATCATCTAAAAAGAACGATTTTTCATAATCATttggt                                             <  1:57433/141‑1 (MQ=255)                                                                                                  ggtgatacactttttAAATGTCTAAATATTAAATCATCATCTAGTATATCCATTATCAATTAGCAAGTATGTTTTATCAATCAGTAAGTTTTACTTTCGCATTATCATCTAAAAAGAACGAGTTCTCATAATCAAttgttt                                            >  2:1068486/13‑141 (MQ=255)                                                                                                  aGTGTTCCGCTATTTAAATGCCTAAATTTTAATTCATCATCTAATATATCCATTATCAATTAGCAAGTATGTTTTATCAATCAGTAAGTTTTACTTTCGCATTATCATCTAAAAAGAACGATTTTTCATAATCATttggtt                                            >  2:713517/1‑141 (MQ=255)                                                                                                  aGTGTTCCGCTATTTAAATGCCTAAATTTTAATTCATCATCTAATATATCCATTATCAATTAGCAAGTATGTTTTATCAATCAGTAAGTTTTACTTTCGCATTATCATCTAAAAAGAACGATTTTTCATAATCATttggtt                                            >  1:601218/1‑141 (MQ=255)                                                                                                           ctttttAAATGTCTAAATTTTAATTCATCATCTAGTATATCCATTATCAATTAGCAAGTATGTTTTATCAATCAGTAAGTTTTACTTTCGCATTATCATCTAAAAAGAACGATTTTTCATAATCATTTGGTTGGTGCCAtg                                   <  2:958620/138‑1 (MQ=255)                                                                                                               ttAAATGCCTAAATTTTAATTCATCATCTAATATATCCATTATCAATTAGCAAGTATGTTTTATCAATCAGTAAGTTTTACTTTCGCATTATCATCTAAAAAGAACGATTTTTCATAATCATTTGGTTGGTGCCAtgttgt                               <  1:135148/141‑1 (MQ=255)                                                                                                               ttAAATGCCTAAATTTTAATTCATCATCTAATATATCCATTATCAATTAGCAAGTATGTTTTATCAATCAGTAAGTTTTACTTTCGCATTATCATCTAAAAAGAACGATTTTTCATAATCATTTGGTTGGTGCCAtgttgt                               >  1:602370/1‑141 (MQ=255)                                                                                                                tAAATGCCTAAATTTTAATTCATCATCTAATATATCCATTATCAATTAGCAAGTATGTTTTATCAATCAGTAAGTTTTACTTTCGCATTATCATCTAAAAAGAACGATTTTTCATAATCATTTGGTTGGTGCCATgttgtt                              <  1:579747/141‑1 (MQ=255)                                                                                                                    tGCCTAAATTTTAATTCATCATCTAATATATCCATTATCAATTAGCAAGTATGTTTTATCAATCAGTAAGTTTTACTTTCGCATTATCATCTAAAAAGAACGATTTTTCATAATCATTTGGTTGGTGCCATGTTGTTTTcc                          >  1:591858/1‑141 (MQ=255)                                                                                                                      ccTAAATTTTAATTCATCATCTTATATATCCATTATCAATTAGCAAGTATGTTTTATCAATCAGTAAGTTTTACTTTCGCATTATCATCTAAAAAGAACGATTTTTCATAATCATTTGGTTGGTGCCATGTTGTTTTCcac                        <  2:305833/141‑1 (MQ=255)                                                                                                                       cTAAATTTTAATTCATCATCTAATATATCCATTATCAATTAGCAAGTATGTTTTATCAATCAGTAAGTTTTACTTTCGCATTATCATCTAAAAAGAACGTTTTTTCATAATCATTTGGTTGGTGCCATGTTGTTTTCcaca                       <  2:516445/141‑1 (MQ=255)                                                                                                                          aaTTTTAATTCATCATCTAATATATCCATTATCAATTAGCAAGTATGTTTTATCAATCAGTAAGTTTTACTTTCGCATTATCATCTAAAAAGAACGATTTTTCATAATCATTTGGTTGGTGCCATGTTGTTTTCCACAttc                    <  2:394137/141‑1 (MQ=255)                                                                                                                          aaTTTTAATTCATCATCTAATATATCCATTATCAATTAGCAAGTATGTTTTATCAATCAGTAAGTTTTACTTTCGCATTATCATCTAAAAAGAACGATTTTTCATAATCATTTGGCTGTTGCTATGTTGTTTTCTACAttc                    >  2:860426/1‑141 (MQ=255)                                                                                                                             tttAATTCATCATCTAATATATCCATTATCAATTAGCAAGTATGTTTTATCAATCAGTAAGTTTTACTTTCGCATTATCATCTAAAAAGAACGATTTTTCATAATCATTTGGTTGGTGCCATGTTGTTTTCCACAttctat                 <  2:867880/141‑1 (MQ=255)                                                                                                                             tttAATTCATCATCTAATATATCCATTATCAATTAGCAAGTATGTTTTATCAATCAGTAAGTTTTACTTTCGCATTATCATCTAAAAAGAACGATTTTTCATAATCATTTGGTTGGTGCCATGTTGTTTTCCACAttctat                 <  2:291662/141‑1 (MQ=255)                                                                                                                              ttAATTCATCATCTAATATATCCATTATCAATTAGCAAGTATGTTTTATCAATCAGTAAGTTTTACTTTCGCATTATCATCTAAAAAGAACGATTTTTCATAATCATTTGGTTGGTGCCATGTTGTTTTCCACAttctatt                <  1:619224/141‑1 (MQ=255)                                                                                                                              ttAATTCATCATCTAATATATCCATTATCAATTAGCAAGTATGTTTTATCAATCAGTAAGTTTTACTTTCGCATTATCATCTAAAAAGAACGATTTTTCATAATCATTTGGTTGGTGCCATGTTGTTTTCCACAttctatt                <  2:341820/141‑1 (MQ=255)                                                                                                                                aaTTCATCATCTAATATATCCATTATCAATTAGCAAGTATGTTTTATCAATCAGTAAGTTTTACTTTCGCATTATCATCTAAAAAGAACGATTTTTCATAATCATTTGGTTGGTGCCATGTTGTTTTCCACAttctatttc              >  1:325731/1‑141 (MQ=255)                                                                                                                                 aTTCATCATCTAATATATCCATTATCAATTAGCAAGTATGTTTTATCAATCAGTAAGTTTTACTTTCGCATTATCATCTAAAAAGAACGATTTTTCATAATCATTTGGTTGGTGCCATGTTGTTTTCCACAttctatttct             >  1:882421/1‑141 (MQ=255)                                                                                                                                 aTTCATCATCTAATATATCCATTATCAATTAGCAAGTATGTTTTATCAATCAGTAAGTTTTACTTTCGCATTATCATCTAAAAAGAACGATTTTTCATAATCATTTGGTTGGTGCCATGTTGTTTTCCACAttctatttct             <  1:85910/141‑1 (MQ=255)                                                                                                                                     atcatcTAATATATCCATTATCAATTAGCAAGTATGTTTTATCAATCAGTAAGTTTTACTTTCGCATTATCATCTAAAAAGAACGATTTTTCATCATCATTTGGTTGGTGCCATGTTGTTTTCCACATTCTATTTCtatta         <  1:247951/141‑1 (MQ=255)                                                                                                                                      tcatcTAATATATCCATTATCAATTAGCAAGTATGTTTTATCAATCAGTAAGTTTTACTTTCGCATTATCATCTAAAAAGAACGATTTTTTTTTTTTTTTTGGTTGGTGCCATGTTGTTTTCCACATTCTTTTTCtattat        >  2:899046/1‑141 (MQ=255)                                                                                                                                       catcTAATATATCCATTATCAATTAGCAAGTATGTTTTATCAATCAGTAAGTTTTACTTTCGCATTATCATCTAAAAAGAACGATTTTTTTTTTTTTTTTTGTTGGTGCTATGTTGTTTTCCACATTCTATTTCTattatt       >  2:16044/1‑141 (MQ=255)                                                                                                                                       catcTAATATATCCATTATCAATTAGCAAGTATGTTTTATCAATCAGTAAGTTTTACTTTCGCATTATCATCTAAAAAGAACGATTTTTCATAATCATTTGGTTGGTGCCATGTTGTTTTCCACATTCTATTTCTattatt       <  1:496258/141‑1 (MQ=255)                                                                                                                                           tAATATATCCATTATCAATTAGCAAGTATGTTTTATCAATCAGTAAGTTTTACTTTCGCATTATCATCTAAAAAGAACGATTTTTCATAATCATTTGGTTGGTGCCATGTTGTTTTCCACATTCTATTTCTATTATTAGCa   >  2:84180/1‑141 (MQ=255)                                                                                                                                            aaTATATCCATTATCAATTAGCAAGTATGTTTTATCAATCAGTACGTTTTACTTTCGCATTATCATCTAAAAAGAACGATTTTTCATAATCATATGGTTGGTGCCATGTTGTTTTCCACATTCTATTTCTATTATTAGCaa  >  2:11125/1‑141 (MQ=255)                                                                                                                                             |                                                                                                                                            ACGTCTTGCTTGTTTATATTAATTATTATATTATAATAATTTTAATCTGTAAAGTGTTTTTGCTCTCTTTTTTATAATTATTCTAATCTAACCGTAAAGTGTTCCGCTATTTAAATGCCTAAATTTTAATTCATCATCTAATATATCCATTATCAATTAGCAAGTATGTTTTATCAATCAGTAAGTTTTACTTTCGCATTATCATCTAAAAAGAACGATTTTTCATAATCATTTGGTTGGTGCCATGTTGTTTTCCACATTCTATTTCTATTATTAGCAA  >  CP000730/2256938‑2257217

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑