| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP000730 | 2,379,121 | T→C | 8.6% | G122G (GGA→GGG) | USA300HOU_2240 ← | AEC family malonate efflux carrier |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP000730 | 2,379,121 | 0 | T | C | 8.6% | 291.5 / 17.1 | 117 | G122G (GGA→GGG) | USA300HOU_2240 | AEC family malonate efflux carrier |
| Reads supporting (aligned to +/- strand): ref base T (55/52); new base C (6/4); total (61/56) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 7.45e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.23e-01 | |||||||||||
Only 100 of 119 total aligned reads displayed.
GGCACTGATTGTAATAATTTCTTACCTAAATATTTAAAATCGAATTGATCACTACCTTCACTAAAGTAGCTACCTACAAAGTAAGTAATTCCAAACATCACAAAGGCACCACCTATATCAGCCATAACAAAATAAATAAGTCCCGTTTTAGGCCATATCACTTCAATTAGTGGATATGCAAACAATCCAATATTCATAGCACCAGTCATCATACCTACTGATCCACGCATGTGATTATCATATTTTCTAAAAAACCAGACAGCAATCATTTTCGCCACAA > CP000730/2378981‑2379260 | ggCACTGATTGTAATAATTTCTTACCTAAATATTTAAAATCGAATTGATCACTACCTTCACTAATGTACCTTCCTTCAAATAAATTTTCTCCAAACATCACAAAGGCACCACCTATATCAGCCATAACAAAATAAATAAGt > 1:1028646/1‑141 (MQ=255)ggCACTGATTGTAATAATTTCTTACCTAAATATTTAAAATCGAATTGATCACTACCTTCACTAAAGTAGCTACCTACAAAGTAAGTAATTCCAAACATCACAAAGGCACCACCTATATCAGCCATAACAAAATAAATAAGt > 2:438932/1‑141 (MQ=255) gCACTGATTGTAATAATTTCTTACCTAAATATTTAAAATCGAATTGATCACTACCTTCACTAAAGTAGCTACCTACAAAGTAAGTAATTCCAAACATCACAAAGGCACCACCTATATCAGCCATAACAAAATAAATAAGTc < 1:77333/141‑1 (MQ=255) cACTGATTGTAATAATTTCTTACCTAAATATTTAAAATCGAATTGATCACTACCTTCACTAAAGTAGCTACCTACAAAGTAAGTAATTCCAAACATCACAAAGGCACCACCTATATCAGCCATAACAAAATAAATAAGTcc > 1:419709/1‑141 (MQ=255) aCTGATTGTAATAATTTCTTACCTAAATATTTAAAATCGAATTGATCACTACCTTCACTAAAGTAGCTACCTACAAAGTAAGTAATTCCAAACATCACAAAGGCACCACCTATATCAGCCATAACAAAATAAATAAGTccc > 2:45864/1‑141 (MQ=255) aCTGATTGTAATAATTTCTTACCTAAATATTTAAAATCGAATTGATCACTACCTTCACTAAAGTAGCTACCTACAAAGTAAGTAATTCCAAACATCACAAAGGCACCACCTATATCAGCCATAACAAAATAAATAAGTccc < 1:181829/141‑1 (MQ=255) cTGATTGTAATAATTTCTTACCTAAATATTTAAAATTGAATTGATAACTACCTTCACTAAATTAGCTACCTACAAAGTAAGTAATTTCAAACATCACAAAGGCACAACCTATATAAGCCATAACAAAATAAATAAGTCACg > 2:84394/1‑141 (MQ=255) cTGATTGTAATAATTTCTTACCTAAATATTTAAAATCGAATTGATCACTACCTTCACTAAAGTAGCTACCTACAAAGTAAGTAATTCCAAACATCACAAAGGCACCACCTATATCAGCCATAACAAAATAAATAAGTccca < 2:241267/141‑2 (MQ=255) cTGATTGTAATAATTTCTTACCTAAATATTTAAAATCGAATTGATCACTACCTTCACTAAAGTAGCTACCTACAAAGTAAGTAATTCCAAACATCACAAAGGCACCACCTATATCAGCCATAACAAAATAAATAAGTccca < 2:241309/141‑2 (MQ=255) tGATTGTAATAATTTCTTAACTAATTATTTAAAAACGAATTGATCAATACCTTCACTAAATTAGCTACCAAAAAAGTAAGTAATTCTAAAAATGACAAAGGCACCACCTATATCAGCCATAATAAAATTTATTAGTTCCGt < 2:492934/141‑1 (MQ=255) gATTGTAATAATTTCTTACCTAAATATTTAAAATCGAATTGATCACTACCTTCACTAAAGTAGCTACCTACAAAGTAAGTAATTCCAAACATCACAAAGGCACCACCTATATCAGCCATAACAAAATAAATAAGTCCCGtt < 2:726591/141‑1 (MQ=255) ctGTAATAATTTCTTACCTAAATATTTAAAATCGAATTGATCACTACCTTCACTAAAGTAGCTACCTACAAAGTAAGTAATTCCAAACATCACAAAGGCACCACCTATATCAGCCATACCAAAATAAATAAGCCCCGtttt < 1:732765/140‑1 (MQ=255) gTAATAATTTCTTACCTAAATATTTAAAATCGAATTGATCACTACCTTCACTAAAGTAGCTACCTACAAAGTAAGTAATTCCAAACATCACAAAGGCACCACCTATATCAGCCATAACAAAATAAATAAGTCCCGTTTTAg > 1:997833/1‑141 (MQ=255) gTAATAATTTCTTACCTAAATATTTAAAATCGAATTGATCACTACCTTCACTAAAGTAGCTACCTACAAAGTAAGTAATTCCAAACATCACAAAGGCACCACCTATATCAGCCATAACAAAATAAATAAGTCCCGTTTTAg < 1:249898/141‑1 (MQ=255) taataaTTTCTTACCTAAATATTTAAAATCGAATTGATCACTACCTTCACTAAAGTAGCTACCTACAAAGTAAGTAATTCCAAACATCACAAAGGCACCACCTATATCAGCCATAACAAAATAAATAAGTCCCGTTTTAgg > 1:695262/1‑141 (MQ=255) taataaTTTCTTACCTAAATATTTAAAATCGAATTGATCACTACCTTCACTAAAGTAGCTACCTACAAAGTAAGTAATTCCAAACATCACAAAGGCACCACCTATATCAGCCATAACAAAATAAATAAGTCCCGTTTTAgg > 2:722361/1‑141 (MQ=255) aataatTTCTTACCTAAATATTTAAAATCGAATTGATCACTACCTTCACTAAAGTAGCTACCTACAAAGTAAGTAATTCCAAACATCACAAAGGCACCACCTATATCAGCCATAACAAAATAAATAAGTCCCGTTTTAGGc > 1:429513/1‑141 (MQ=255) ataatTTCTTACCTAAATATTTAAAATCGAATTGATCACTACCTTCACTAAAGTAGCTACCTACAAAGTAAGTAATTCCAAACATCACAAAGGCACCACCTATATCAGCCATAACAAAATAAATAAGTCCCGTTTTAGGcc > 2:142280/1‑141 (MQ=255) ataatTTCTTACCTAAATATTTAAAATCGAATTGATCACTACCTTCACTAAAGTAGCTACCTACAAAGTAAGTAATTCCAAACATCACAAAGGCACCACCTATATCAGCCATAACAAAATAAATAAGTCCCGTTTTAGGcc < 1:63965/141‑1 (MQ=255) atTTCTTACCTAAATATTTAAAATCGAATTGATCACTACCTTCACTAAAGTAGCTACCTACAAAGTAAGTAATTCCAAACATCACAAAGGCACCACCTATATCAGCCATAACAAAATAAATAAGTCCCGTTTTAGGCCata > 2:498402/1‑141 (MQ=255) ttACCTAAATATTTAAAATCGAATTGATCACTACCTTCACTAAAGTAGCTACCTACAAAGTAAGTAATTCCAAACATCACAAAGGCACCACCTATATCAGCCATAACAAAATAAATAAGTCCCGTTTTAGGCCATATCACt < 2:558282/141‑1 (MQ=255) aCCTAAATATTTAAAATCGAATTGATCACTACCTTCACTAAAGTAGCTACCTACAAAGTAAGTAATTCCAAACATCACAAAGGCACCACCTATATCAGCCATAACAAAATAAATAAGTCCCGTTTTAGGCCATATCACTTc > 1:285316/1‑141 (MQ=255) tAAATATTTAAAATCGAATTGATCACTACCTTCACTAAAGTAGCTACCTACAAAGTAAGTAATTCCAAACATCACAAAGGCACCACCTATATCAGCCATAACAAAATAAATAAGTCCCGTTTTAGGCCATATCACTTCAAt < 2:405831/141‑1 (MQ=255) aaaTATTTAAAATCGAATTGATCACTACCTTCACTAAAGTAGCTACCTACAAAGTAAGTAATTCCAAACATCACAAAGGCACCACCTATATCAGCCATAACAAAATAAATAAGTCCCGTTTTAGGCCATATCACTTCAAtt < 2:825961/141‑1 (MQ=255) tatTTAAAATCGAATTGATCACTACCTTCACTAAAGTAGCTACCTACAAAGTAAGTAATTCCAAACATCACAAAGGCACCACCTATATCAGCCATAACAAAATAAATAAGTCCCGTTTTAGGCCATATccactaattgaag < 2:473998/141‑13 (MQ=255) tttAAAATCGAATTGATCACTACCTTCACTAAAGTAGCTACCTACAAAGTAAGTAATTCCAAACATCACAAAGGCACCACCTATATCAGCCATAACAAAATAAATAAGTCCCGTTTTAGGCCATATCACTTCAATTAGTgg < 2:595232/141‑1 (MQ=255) tttAAAATCGAATTGATCACTACCTTCACTAAAGTAGCTACCTACAAAGTAAGTAATTCCAAACATCACAAAGGCACCACCTATATCAGCCATAACAAAATAAATAAGTCCCGTTTTAGGCCATATCACTTCAATTAGTgg < 2:405081/141‑1 (MQ=255) ttAAAATCGAATTGATCACTACCTTCACTAAAGTAGCTACCTACAAAGTAAGTAATTCCAAACATCACAAAGGCACCACCTATATCAGCCATAACAAAATAAATAAGTCCCGTTTTAGGCCATATCACTTCAATTAGTGGa < 1:331726/141‑1 (MQ=255) cGAATTGATCACTACCTTCACTAAAGTAGCTACCTACAAAGTAAGTAATTCCAAACATCACAAAGGCACCACCTATATCAGCCATAACAAAATAAATAAGTCCCGTTTTAGGCCATATCACTTCAATTAGTGGATATGCaa < 1:155986/141‑1 (MQ=255) cGAATTGATCACTACCTTCACTAAAGTAGCTACCTACAAAGTAAGTAATTCCAAACATCACAAAGGCACCACCTATATCAGCCATAACAAAATAAATAAGTCCCGTTTTAGGCCATATCACTTCAATTAGTGGATATGCaa < 1:990136/141‑1 (MQ=255) cGAATTGATCACTACCTTCACTAAAGTAGCTACCTACAAAGTAAGTAATTCCAAACATCACAAAGGCACCACCTATATCAGCCATAACAAAATAAATAAGTCCCGTTTTAGGCCATATCACTTCAATTAGTGGATATGCaa < 1:235665/141‑1 (MQ=255) gAATTGATCACTACCTTCACTAAAGTAGCTACCTACAAAGTAAGTAATTCCAAACATCACAAAGGCACCACCTATATCAGCCATAACAAAATAAATAAGTCCCGTTTTAGGCCATATCACTTCAATTAGTGGATATGCaca > 1:689368/1‑139 (MQ=255) aaTTGATCACTACACTCACTAAAGTATCTACCTACAAAGTAAGTAATTCCAAACACCACAAAGGCACCACCTATATCAGCCATACCAAAATAAATAAGCCCCGTTTTAGGCCATATCACTTCAATTAGTGGATATGCAAAc < 2:859783/141‑1 (MQ=255) aTTGATCACTACCTTCACTAAAGTAGCTACCTACAAAGTAAGTAATTCCAAACACCACAAAGGCACCACCTATATCAGCCATACCAAAATAAATAAGCCCCGTTTTAGGCCATATCACTTCAATTAGTGGATATGCAAACa < 2:32884/141‑1 (MQ=255) gATCACTACCTTCACTAAAGTAGCTACCTACAAAGTAAGTAATTCCAAACATCACAAAGGCACCACCTATATCAGCCATAACAAAATAAATAAGTCCCGTTTTAGGCCATATCACTTCAATTAGTGGATATGCAAACAATc < 2:104720/141‑1 (MQ=255) aTCACTACCTTCACTAAAGTAGCTACCTACAAAGTAAGTAATTCCAAACATCACAAAGGCACCACCTATATCAGCCATAACAAAATAAATAAGTCCCGTTTTAGGCCATATCACTTCAATTAGTGGATATGCAAACAATcc > 1:1043187/1‑141 (MQ=255) tCACTACCTTCACTAAAGTAGCTACCTACAAAGTAAGTAATTCCAAACATCACAAAGGCACCACCTATATCAGCCATAACAAAATAAATAAGTCCCGTTTTAGGCCATATCACTTCAATTAGTGGATATGCAAACAATCCa < 2:991791/141‑1 (MQ=255) tCACTACCTTCACTAAAGTAGCTACCTACAAAGTAAGTAATTCCAAACATCACAAAGGCACCACCTATATCAGCCATAACAAAATAAATAAGTCCCGTTTTAGGCCATATCACTTCAATTAGTGGATATGCAAACAATCCa > 2:306934/1‑141 (MQ=255) cACTACCTTCACTAAAGTAGCTACCTACAAAGTAAGTAATTCCAAACATCACAAAGGCACCACCTATATCAGCCATAACAAAATAAATAAGTCCCGTTTTAGGCCATATCACTTCAATTAGTGGATATGCAAACAATCCaa < 2:754932/141‑1 (MQ=255) tACCTTCACTAAAGTAGCTACCTACAAAGTAAGTAATTCCAAACATCACAAAGGCACCACCTATATCAGCCATAACAAAATAAATAAGTCCCGTTTTAGGCCATATCACTTCAATTAGTGGATATGCAAACAATCCAatat < 1:106348/141‑1 (MQ=255) ccTTCACTAAAGTAGCTACCTACAAAGTAAGTAATTCCAAACATCACAAAGGCACCACCTATATCAGCCATAACAAAATAAATAAGTCCCGTTTTAGGCCATATCACTTCAATTAGTGGATATGCAAACAATCCAATATTc < 1:816076/141‑1 (MQ=255) tCACTAAAGTAGCTACCTACAAAGTAAGTAATTCCAAACATCACAAAGGCACCACCTATATCAGCCATAACAAAATAAATAAGTCCCGTTTTAGGCCATATCACTTCAATTAGTGGATATGCAAACAATCCAATATTCATa > 2:699896/1‑141 (MQ=255) tCACTAAAGTAGCTACCTACAAAGTAAGTAATTCCAAACATCACAAAGGCACCACCTATATCAGCCATAACAAAATAAAAAAGTCCCGTTTTAGGCCATATCACTTCAATTAGTGGATATGCAAACAATCCAATATTCATa > 2:148554/1‑141 (MQ=255) cACTAAAGTAGCTACCTACAAAGTAAGTAATTCCAAACATCACAAAGGCACCACCTATATCAGCCATAACAAAATAAATAAGTCCCGTTTTAGGCCATATCACTTCAATTAGTGGata > 2:213394/1‑118 (MQ=255) cACTAAAGTAGCTACCTACAAAGTAAGTAATTCCAAACATCACAAAGGCACCACCTATATCAGCCATAACAAAATAAATAAGTCCCGTTTTAGGCCATATCACTTCAATTAGTGGata < 1:213394/118‑1 (MQ=255) aCTAAAGTAGCTACCTACAAAGTAAGTAATTCCAAACATCACAAAGGCACCACCTATATCAGCCATACCAAAATAAATAAGCCCCGTTTTAGGCCATATCACTTCAATTAGTGGATATGCAAACAATCCAATATTCATAGc > 1:233590/1‑141 (MQ=255) aCTAAAGTAGCTACCTACAAAGTAAGTAATTCCAAACATCACAAAGGCACCACCTATATCAGCCATAACAAAATAAATAAGTCCCGTTTTAGGCCATATCACTTCAATTAGTGGATATGCAAACAATCCAATATTCATAGc < 2:619329/141‑1 (MQ=255) cTAAAGTAGCTACCTACAAAGTAAGTAATTCCAAACATCACAAAGGCACCACCTATATCAGCCATAACAAAATAAATAAGTCCCGTTTTAGGCCATATCACTTCAATTAGTGGATATGCAAACAATCCAATATTCATAGCa > 1:239907/1‑141 (MQ=255) cTAAAGTAGCTACCTACAAAGTAAGTAATTCCAAACATCACAAAGGCACCACCTATATCAGCCATAACAAAATAAATAAGTCCCGTTTTAGGCCATATCACTTCAATTAGTGGATATGCAAACAATCCAATATTCATAGCa > 2:250112/1‑141 (MQ=255) aGTAGCTACCTACAAAGTAAGTAATTCCAAACATCACAAAGGCACCACCTATATCAGCCATAACAAAATAAATAAGTCCCGTTTTAGGCCATATCACTTCAATTAGTGGATATGCAAACAATCCAATATTCATAGCACCAg < 2:515986/141‑1 (MQ=255) aGTAGCTACCTACAAAGTAAGTAATTCCAAACATCACAAAGGCACCACCTATATCAGCCATAACAAAATAAATAAGTCCCGTTTTAGGCCATATCACTTCAATTAGTGGATATGCAAACAATCCAATATTCATAGCACCAg > 2:865831/1‑141 (MQ=255) aGTAGCTACCTACAAAGTAAGTAATTCCAAACATCACAAAGGCACCACCTATATCAGCCATAACAAAATAAATAAGTCCCGTTTTAGGCCATATCACTTCAATTAGTGGATATGCAAACAATCCAATATTCATAGCACCAg > 2:865936/1‑141 (MQ=255) aGTAGCTACCTACAAAGTAAGTAATTCCAAACATCACAAAGGCACCACCTATATCAGCCATAACAAAATAAATAAGTCCCGTTTTAGGCCATATCACTTCAATTAGTGGATATGCAAACAATCCAATATTCATAGCACCAg > 2:962712/1‑141 (MQ=255) aGTAGCTACCTACAAAGTAAGTAATTCCAAACATCACAAAGGCACCACCTATATCAGCCATAACAAAATAAATAAGTCCCGTTTTAGGCCATATCACTTCAATTAGTGGATATGCAAACAATCCAATATTCATAGCACCAg < 2:334037/141‑1 (MQ=255) gTAGCTACCTACAAAGTAAGTAATTCCAAACATCACAAAGGCACCACCTATATCAGCCATAACAAAATAAATAAGTCCCGTTTTAGGCCATATCACTTCAATTAGTGGATATGCAAACAATCCAATATTCATAGCACGAGt > 1:143641/1‑141 (MQ=255) aGCTACCTACAAAGTAAGTAATTCCAAACATCACAAAGGCACCACCTATATCAGCCATAACAAAATAAATAAGTCCCGTTTTAGGCCATATCACTTCAATTAGTGGATATGCAAACAATCCAATATTCATAGCACCAGtca < 1:970348/141‑1 (MQ=255) gCTACCTACAAAGTAAGTAATTCCAAACATCACAAAGGCACCACCTATATCAGCCATAACAAAATAAATAAGTCCCGTTTTAGGCCATATCACTTCAATTAGTGGATATGCAAACAATCCAATATTCATAGCACCAGtcat > 2:490591/1‑141 (MQ=255) gCTACCTACAAAGTAAGTAATTCCAAACATCACAAAGGCACCACCTATATCAGCCATAACAAAATAAATAAGTCCCGTTTTAGGCCATATCACTTCAATTAGTGGATATGCAAACAATCCAATATTCATAGCACCAGtcat < 1:328952/141‑1 (MQ=255) gCTACCTACAAAGTAAGTAATTCCAAACATCACAAAGGCACCACCTATATCAGCCATAACAAAATAAATAAGTCCCGTTTTAGGCCATATCACTTCAATTAGTGGATATGCAAACAATCCAATATTCATAGCACCAGtcaa > 1:378122/1‑140 (MQ=255) acctacAAAGTAAGTAATTCCAAACATCACAAAGGCACCACCTATATCAGCCATAACAAAATAAATAAGTCCCGTTTTAGGCCATATCACTTCAATTAGTGGATATGCAAACAATCCAATATTCATAGCACCAGTcatcat < 1:492555/141‑1 (MQ=255) cAAAGTAAGTAATTCCAAACATCACAAAGGCACCACCTATATCAGCCATAACAAAATAAATAAGTCCCGTTTTAGGCCATATCACTTCAATTAGTGGATATGCAAACAATCCAATATTCATAGCACCAGTCATCATACCTa < 2:217183/141‑1 (MQ=255) aagtaagtAATTCCAAACATCACAAAGGCACCACCTATATCAGCCATAACAAAATAAATAAGTCCCGTTTTAGGCCATATCACTTCAATTAGTGGATATGCAAACAATCCAATATTCATAGCACCAGTCATCATACCTACt > 1:223390/1‑141 (MQ=255) agtaagtaATTCCAAACATCACAAAGGCACCACCTATATCAGCCATACCAAAATAAATAAGCCCCGTTTTAGGCCATATCACTTCAATTAGTGGATATGCAAACAATCCAATATTCATAGCACCAGTCATCATACCTACTg > 2:204056/1‑141 (MQ=255) gtaagtaaTTCCAAACATCACAAAGGCACCACCTATATCAGCCATAACAAAATAAATAAGTCCCGTTTTAGGCCATATCACTTCAATTAGTGGATATGCAAACAATCCAATATTCATAGCACCAGTCATCATACCTACTGa < 1:426240/141‑1 (MQ=255) taagtaaTTCCAAACATCACAAAGGCACCACCTATATCAGCCATAACAAAATAAATAAGTCCCGTTTTAGGCCATATCACTTCAATTAGTGGATATGCAAACAATCCAATATTCATAGCACCAGTCATCATACCTACTGAt > 2:953591/1‑141 (MQ=255) agtaaTTCCAAACATCACAAAGGCACCACCTATATCAGCCATAACAAAATAAATAAGTCCCGTTTTAGGCCATATCACTTCAATTAGTGGATATGCAAACAATCCAATATTCATAGCACCAGTCATCATACCTACTGATcc > 1:884066/1‑141 (MQ=255) agtaaTTCCAAACATCACAAAGGCACCACCTATATCAGCCATAACAAAATAAATAAGTCCCGTTTTAGGCCATATCACTTCAATTAGTGGATATGCAAACAATCCAATATTCATAGCACCAGTCATCATACCTACTGATcc > 1:847106/1‑141 (MQ=255) gtaaTTCCAAACATCACAAAGGCACCACCTATATCAGCCATAACAAAATAAATAAGTCCCGTTTTAGGCCATATCACTTCAATTAGTGGATATGCAAACAATCCAATATTCATAGCACCAGTCATCATACCTACTGATCCa > 1:608785/1‑141 (MQ=255) gtaaTTCCAAACATCACAAAGGCACCACCTATATCAGCCATAACAAAATAAATAAGTCCCGTTTTAGGCCATATCACTTCAATTAGTGGATATGCAAACAATCCAATATTCATAGCACCAGTCATCATACCTACTGATCCa > 2:145331/1‑141 (MQ=255) ttCCAAACATCACAAAGGCACCACCTATATCAGCCATAACAAAATAAATAAGTCCCGTTTTAGGCCATATCACTTCAATTAGTGGATATGCAAACAATCCAATATTCATAGCACCAGTCATCATACCTACTGATCCACGCa > 2:1050157/1‑141 (MQ=255) ttCCAAACATCACAAAGGCACCACCTATATCAGCCATAACAAAATAAATAAGTCCCGTTTTAGGCCATATCACTTCAATTAGTGGATATGCAAACAATCCAATATTCATAGCACCAGTCATCATACCTACTGATCCACGCa > 1:153476/1‑141 (MQ=255) tCCAAACATCACAAAGGCACCACCTATATCAGCCATAACAAAATAAATAAGTCCCGTTTTAGGCCATATCACTTCAATTAGTGGATATGCAAACAATCCAATATTCATAGCACCAGTCATCATACCTACTGATCCACGCAt < 1:789719/141‑1 (MQ=255) aaCATCACAAAGGCACCACCTATATCAGCCATAACAAAATAAATAAGTCCCGTTTTAGGCCATATCACTTCAATTAGTGGATATGCAAACAATCCAATATTCATAGCACCAGTCATCATACCTACTGATCCACGCATGTGa > 2:74004/1‑141 (MQ=255) aaCATCACAAAGGCACCACCTATATCAGCCATAACAAAATAAATAAGTCCCGTTTTAGGCCATATCACTTCAATTAGTGGATATGCAAACAATCCAATATTCATAGCACCAGTCATCATACCTACTGATCCACGCATGTGa > 2:912665/1‑141 (MQ=255) aCATCACAAAGGCACCACCTATATCAGCCATAACAAAATAAATAAGTCCCGTTTTAGGCCATATCACTTCAATTAGTGGATATGCAAACAATCCAATATTCATAGCACCAGTCATCATACCTACTGATCCACGCATGTGAt > 2:349394/1‑141 (MQ=255) aTCACAAAGGCACCACCTATATCAGCCATAACAAAATAAATAAGTCCCGTTTTAGGCCATATCACTTCAATTAGTGGATATGCAAACAATCCAATATTCATAGCACCAGTCATCATACCTACTGATCCACGCATGTGATTa > 1:125177/1‑141 (MQ=255) acaAAGGCACCACCTATATCAGCCATAACAAAATAAATAAGTCCCGTTTTAGGCCATATCACTTCAATTAGTGGATATGCAAACAATCCTATATTCATAGCACCAGTCATCATACCTACTGATCCACGCATGTGATTATCa < 2:1054170/141‑1 (MQ=255) acaAAGGCACCACCTATATCAGCCATAACAAAATAAATAAGTCCCGTTTTAGGCCATATCACTTCAATTAGTGGATATGCAAACAATCCAATATTCATAGCACCAGTCATCATACCTACTGATCCACGCATGTGATTATCa > 1:240114/1‑141 (MQ=255) aaGGCACCACCTATATCAGCCATAACAAAATAAATAAGTCCCGTTTTAGGCCATATCACTTCAATTAGTGGATATGCAAACAATCCAATATTCATAGCACCAGTCATCATACCTACTGATCCACGCATGTGATTATCatat < 1:840973/141‑1 (MQ=255) caccacCTATATCAGCCATAACAAAATAAATAAGTCCCGTTTTAGGCCATATCACTTCAATTAGTGGATATGCAAACAATCCAATATTCATAGCACCAGTCATCATACCTACTGATCCACGCATGTGATTATCATATTTTc < 1:530842/141‑1 (MQ=255) ccaccTATATCAGCCATAACAAAATAAATAAGTCCCGTTTTAGGCCATATCACTTCAATTAGTGGATATGCAAACAATCCAATATTCATAGCACCAGTCATCATACCTACTGATCCACGCATGTGATTATCATATTTTCTa > 1:695942/1‑141 (MQ=255) ccaccTATATCAGCCATAACAAAATAAATAAGTCCCGTTTTAGGCCATATCACTTCAATTAGTGGATATGCAAACAATCCAATATTCATAGCACCAGTCATCATACCTACTGATCCACGCATGTGATTATCATATTTTCTa > 1:134736/1‑141 (MQ=255) caccTATATCAGCCATAACAAAATAAATAAGTCCCGTTTTAGGCCATATCACTTCAATTAGTGGATATGCAAACAATCCAATATTCATAGCACCAGTCATCATACCTACTGATCCACGCATGTGATTATCATATTTTCTaa < 2:394631/141‑1 (MQ=255) caccTATATCAGCCATAACAAAATAAATAAGTCCCGTTTTAGGCCATATCACTTCAATTAGTGGATATGCAAACAATCCAATATTCATAGCACCAGTCATCATACCTACTGATCCACGCATGTGATTATCATATTTTCTaa < 2:526005/141‑1 (MQ=255) cAGCCATAACAAAATAAATAAGTCCCGTTTTAGGCCATATCACTTCAATTAGTGGATATGCAAACAATCCAATATTCATAGCACCAGTCATCATACCTACTGATCCACGCATGTGATTATCATATTTTCTAAAAAACCAGa > 1:813371/1‑141 (MQ=255) aGCCATAACAAAATAAATAAGTCCCGTTTTAGGCCATATCACTTCAATTAGTGGATATGCAAACAATCCAATATTCATAGCACCAGTCATCATACCTACTGATCCACGCATGTGATTATCATATTTTCTAAAAAACCAGAc > 1:633803/1‑141 (MQ=255) aGCCATAACAAAATAAATAAGTCCCGTTTTAGGCCATATCACTTCAATTAGTGGATATGCAAACAATCCAATATTCATAGCACCAGTCATCATACCTACTGATCCACGCATGTGATTATCATATTTTCTAAAAAACCAGAc > 1:633788/1‑141 (MQ=255) aTAACAAAATAAATAAGTCCCGTTTTAGGCCATATCACTTCAATTAGTGGATATGCAAACAATCCAATATTCATAGCACCAGTCATCATACCTACTGATCCACGCATGTGATTATCATATTTTCTAAAAAACCAGACAGCa < 2:1048807/141‑1 (MQ=255) acaccataaataaGTCCCGTGTTAGGCCATATCACTTCAATTAGTGGATATGCAAACAATCCAATATTCATAGCACCACTCATCATACCTACTGATCCACGCAAGTGATTATCATATTTTCTAAAAACCCAGACAGCAATc > 2:213154/6‑141 (MQ=255) aCAAAATAAATAAGTCCCGTTTTAGGCCATATCACTTCAATTAGTGGATATGCAAACAATCCAATATTCATAGCACCAGTCATCATACCTACTGATCCACGCATGTGATTATCATATTTTCTAAAAAACCAGACAGCAATc > 2:355656/1‑141 (MQ=255) cAAAATAAATAAGTCCCGTTTTAGGCCATATCACTTCAATTAGTGGATATGCAAACAATCCAATATTCATAGCACCAGTCATCATACCTACTGATCCACGCATGTGATTATCATATTTTCTAAAAAACCAGACAGCAATCa < 1:317255/141‑1 (MQ=255) aataaataAGTCCCGTTTTAGGCCATATCACTTCAATTAGTGGATATGCAAACAATCCAATATTCATAGCACCAGTCATCATACCTACTGATCCACGCATGTGATTATCATATTTTCTAAAAAACCAGACAGCAATCAttt > 1:89500/1‑141 (MQ=255) aataaataAGCCCCGTTTTAGGCCATATCACTTCAATTAGTGGATATGCAAACAATCCAATATTCATAGCACCAGTCATCATACCTACTGATCCACGCATGTGATTATCATATTTTCTAAAAAACCAGACAGCAATCAttt > 2:207211/1‑141 (MQ=255) aataaataAGCCCCGTTTTAGGCCATATCACTTCAATTAGTGGATATGCAAACAATCCAATATTCATAGCACCAGTCATCATACCTACTGATCCACGCATGTGATTATCATATTTTCTAAAAAACCAGACAGCAATCAttt > 1:557521/1‑141 (MQ=255) taaataaGTCCCGTTTTAGGCCATATCACTTCAATTAGTGGATATGCAAACAATCCAATATTCATAGCACCAGTCATCATACCTACTGATCCACGCATGTGATTATCATATTTTCTAAAAAACCAGACAGCAATCATTTTc < 2:55247/141‑1 (MQ=255) aataaGTCCCGTTTTAGGCCATATCACTTCAATTAGTGGATATGCAAACAATCCAATATTCATAGCACCAGTCATCATACCTACTGATCCACGCATGTGATTATCATAAAAAAAAAAAAACCAGACAGCAATCATTTTCGc < 2:932059/141‑1 (MQ=255) taaGCCCCGTTTTAGGCCATATCACTTCAATTAGTGGATATGCAAACAATCCAATATTCATAGCACCAGTCATCATACCTACTGATCCACGCATGTGATTATCATATTTTCTAAAAAACCAGACAGCAATCATTTTCGCca > 2:304176/1‑141 (MQ=255) taaGCCCCGTTTTAGGCCATATCACTTCAATTAGTGGATATGCAAACAATCCAATATTCATAGCACCAGTCATCATACCTACTGATCCACGCATGTGATTATCATATTTTCTAAAAAACCAGACAGCAATCATTTTCGCca > 1:3641/1‑141 (MQ=255) aaGTCCCGTTTTAGGCCATATCACTTCAATTAGTGGATATGCAAACAATCCAATATTCATAGCACCAGTCATCATACCTACTGATCCACGCATGTGATTATCATATTTTCTAAAAAACCAGACAGCAATCATTTTCGCcac < 1:722361/141‑1 (MQ=255) gTCCCGTTTTAGGCCATATCACTTCAATTAGTGGATATGCAAACAATCCAATATTCATAGCACCAGTCATCATACCTACTGATCCACGCATGTGATTATCATATTTTCTAAAAAACCAGACAGCAATCATTTTCGCCACaa > 1:867503/1‑141 (MQ=255) | GGCACTGATTGTAATAATTTCTTACCTAAATATTTAAAATCGAATTGATCACTACCTTCACTAAAGTAGCTACCTACAAAGTAAGTAATTCCAAACATCACAAAGGCACCACCTATATCAGCCATAACAAAATAAATAAGTCCCGTTTTAGGCCATATCACTTCAATTAGTGGATATGCAAACAATCCAATATTCATAGCACCAGTCATCATACCTACTGATCCACGCATGTGATTATCATATTTTCTAAAAAACCAGACAGCAATCATTTTCGCCACAA > CP000730/2378981‑2379260 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |