BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	freq	annotation	gene	description
RA	CP000730	2,379,661	A→T	5.2%	I21L (ATA→TTA)	USA300HOU_2241 →	hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	CP000730	2,379,661	0	A	T	5.2%	312.3 / 5.8	96	I21L (ATA→TTA)	USA300HOU_2241	hypothetical protein
Reads supporting (aligned to +/- strand): ref base A (52/39); new base T (2/3); total (54/42)
Fisher's exact test for biased strand distribution p-value = 6.51e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.60e-01

ATATTTTAGAAGTCTACTGTTTCATGCTATAATCTACATTAAATGCACTTAATTATATTTCAAAGGAGTGTTATAGTATGTCTTTAGAAAACCAACTAGCCGAACTTAAATATGATTATGTTCGTCTTCAAGGTGACATAGAAAAACGGGAATCTTTGAATTTAGATACTTCCGCACTTGTTCGTCAACTTAAAGATATTGAAAATGAAATTAGAAACGTTCGTGCTCAAATGCAAGATTAATAATCTATCATTCAAGCAATAAATGCTTTTTGTT  >  CP000730/2379524‑2379799

atatTTTAGAAGTCTACTGTTTCATGCTATAATCTACATTAAATGCACTTAATTATATTTCAAAGGAGTGTTATAGTATGTCTTTAGAAAACCAACTAGCCGAACTTAAATATGATTATGTTCGTCTTCAAGGTGACATAg                                                                                                                                         <  1:1036981/141‑1 (MQ=255)

  atTTTAGAAGTCTACTGTTTCATGCTATAATCTACATTAAATGCACTTAATTATATTTCAAAGGAGTGTTATAGTATGTCTTTAGAAAACCAACTAGCCGAACTTAAATATGATTATGTTCGTCTTCAAGGTGACATAGaa                                                                                                                                       >  2:397602/1‑141 (MQ=255)

    tttAGAAGTCTACTGTTTCATGCTATAATCTACATTAAATGCACTTAATTATATTTCAAAGGAGTGTTATAGTATGTCTTTAGAAAACCAACTAGCCGAACTTAAATATGATTATGTTCGTCTTCAAGGTGACATAGaaaa                                                                                                                                     >  1:684901/1‑141 (MQ=255)

     ttAGAAGTCTACTGTTTCATGCTATAATCTACATTAAATGCACTTAATTATATTTCAAAGGAGTGTTGTAGTATGTCTTTAGAAAACCAACTAGCCGAACTTAAATATGATTATGTTCGTCTTCAAGGTGACATAGaaaaa                                                                                                                                    <  1:149976/141‑1 (MQ=255)

       aGAAGTCTACTGTTTCATGCTATAATCTACATTAAATGCACTTAATTATATTTCAAAGGAGTGTTATAGTATGTCTTTAGAAAACCAACTAGCCGAACTTAAATATGATTATGTTCGTCTTCAAGGTGACATAGAAAAACg                                                                                                                                  <  1:471815/141‑1 (MQ=255)

       aGAAGTCTACTGTTTCATGCTATAATCTACATTAAATGCACTTAATTATATTTCAAAGGAGTGTTATAGTATGTCTTTAGAAAACCAACTAGCCGAACTTAAATATGATTATGTTCGTCTTCAAGGTGACATAGAAAAACg                                                                                                                                  <  2:398603/141‑1 (MQ=255)

         aaGTCTACTGTTTCATGCTATAATCTACATTAAATGCACTTAATTATATTTCAAAGGAGTGTTATAGTATGTCTTTAGAAAACCAACTAGCCGAACTTAAATATGATTATGTTCGTCTTCAAGGTGACATAGAAAAACggg                                                                                                                                <  1:78186/141‑1 (MQ=255)

            tCTACTGTTTCATGCTATAATCTACATTAAATGCACTTAATTATATTTCAAAGGAGTGTTATAGTATGTCTTTAGAAAACCAACTAGCCGAACTTAAATATGATTATGTTCGTCTTCAAGGTGACATAGAAAAACGGGAAt                                                                                                                             <  1:884086/141‑1 (MQ=255)

               aCTTTTTCATGCTAAAAACTAAAAAAAATGCACTTAATTATATTTCAAAAGAGTGTGATAGTATGTCTTTAGAAAACCAACTAGCCGAAATTAAATATGATTATGTTCGTCTTAAAAAAAAAAAAAAAAAACGGGAATCtt                                                                                                                          <  2:1052803/141‑1 (MQ=255)

                cTGTTTCATGCTATAATCTACATTAAATGCACTTAATTATATTTCAAAGGAGTGTTATAGTATGTCTTTAGAAAACCAACTAGCCGAACTTAAATATGATTATGTTCGTCTTCAAGGTGACATAGAAAAACGGGAATCttt                                                                                                                         <  2:1052525/141‑1 (MQ=255)

                   tttCATGCTATAATCTACATTAAATGCACTTAATTATATTTCAAAGGAGTGTTATAGTATGTCTTTAGAAAACCAACTAGCCGAACTTAAATATGATTATGTTCGTCTTCAAGGTGACATAGAAAAACGGGAATCTTTGaa                                                                                                                      <  1:832189/141‑1 (MQ=255)

                     tCATGCTATAATCTACATTAAATGCACTTAATTATATTTCAAAGGAGTGTTATAGTATGTCTTTAGAAAACCAACTAGCCGAACTTAAATATGATTATGTTCGTCTTCAAGGTGACATAGAAAAACGGGAATCTTTGAAtt                                                                                                                    >  2:1034146/1‑141 (MQ=255)

                       aTGCTATAATCTACATTAAATGCACTTAATTATATTTCAAAGGAGTGTTATAGTATGTCTTTAGAAAACCAACTAGCCGAACTTAAATATGATTATGTTCGTCTTCAAGGTGACATAGAAAAACGGGAATCTTTGACTTTa                                                                                                                  >  1:64/1‑141 (MQ=255)

                         gCTATAATCTACATTAAATGCACTTAATTATATTTCAAAGGAGTGTTATAGTATGTCTTTAGAAAACCAACTAGCCGAACTTAAATATGATTATGTTCGTCTTCAAGGTGACATAGAAAAACGGGAATCTTTGAATTTAGa                                                                                                                >  2:364907/1‑141 (MQ=255)

                          cTATAATCTACATTAAATGCACTTAATTATATTTGAAAGGAGTGTTATAGTATGTCTTTAGAAAACCAACTAGCCGAACTTAAATATGATTATGTTCGTCTTCAAGGTGACTTAGAAAAACGGGAATCTTTGAATTTAGAt                                                                                                               <  1:1004747/141‑1 (MQ=255)

                          cTATAATCTACATTAAATGCACTTAATTATATTTCAAAGGAGTGTTATAGTATGTCTTTAGAAAACCAACTAGCCGAACTTAAATATGATTATGTTCGTCTTCAAGGTGACATAGAAAAACGGGAATCTTTGAATTTAGAt                                                                                                               <  2:818336/141‑1 (MQ=255)

                          cTATAATCTACATTAAATGCACTTAATTATATTTCAAAGGAGTGTTATAGTATGTCTTTAGAAAACCAACTAGCCGAACTTAAATATGATTATGTTCGTCTTCAAGGTGACATAG‑AAAACGGGAATCTTTGAATTTAGATa                                                                                                              <  2:550792/141‑1 (MQ=255)

                          cTATAATCTACATTAAATGCACTTAATTATATTTCAAAGGAGTGTTATAGTATGTCTTTAGAAAACCAACTAGCCGAACTTAAATATGATTATGTTCGTCTTCAAGGTGACATAG‑AAAACGGGAATCTTTGAATTTAGATa                                                                                                              <  2:367019/141‑1 (MQ=255)

                          cTATAATCTACATTAAATGCACTTAATTATATTTAAAAGGAGTGTTATAGTATGTCTTTAGAAAACCAACTAGCCGAACTTAAATATGATTATGTTCGTCTTCAAGGTGACTTAGAAAAACGGGAATCTTTGAATTTAGAt                                                                                                               <  1:1004780/141‑1 (MQ=255)

                            ataATCTACATTAAATGCACTTAATTATATTTCAAAGGAGTGTTATAGTATGTCTTTAGAAAACCAACTAGCCGAACTTAAATATGATTATGTTCGTCTTCAAGGTGACATAGAAAAACGGGAATCTTTGAATTTAGATAc                                                                                                             >  1:40914/1‑141 (MQ=255)

                            ataATCTACATTAAATGCACTTAATTATATTTCAAAGGAGTGTTATAGTATGTCTTTAGAAAACCAACTAGCCGAACTTAAATATGATTATGTTCGTCTTCAAGGTGACATAGAAAAACGGGAATCTTTGAATTTAGATAc                                                                                                             >  2:402312/1‑141 (MQ=255)

                             taATCTACATTAAATGCACTTAATTATATTTCAAAGGAGTGTTATAGTATGTCTTTAGAAAACCAACTAGCCGAACTTAAATATGATTATGTTCGTCGTCAAGGTGACATAGAAAAACGGGAATCTTTGAATTTAGATACt                                                                                                            >  1:854226/1‑141 (MQ=255)

                                  tACATTAAATGCACTTAATTATATTTCAAAGGANTGTTATAGTATGTCTTTAGAAAACCAACTAGCCGAACTTAAATATGATTATGTTCGTCTTCAAGGTGACATAGAAAAACGGGAATCTTTGAATTTAGATACNTCCGc                                                                                                       >  1:302122/1‑141 (MQ=255)

                                    cATTAAATGCACTTAATTATATTTCAAAGGAGTGTTATAGTATGTCTTTAGAAAACCAACTAGCCGAACTTAAATATGATTATGTTCGTCTTCAAGGTGACATAGAAAAACGGGAATCTTTGAATTTAGATACTTCCGCAc                                                                                                     >  2:597228/1‑141 (MQ=255)

                                      ttAAATGCACTTAATTATATTTCAAAGGAGTGTTATAGTATGTCTTTAGAAAACCAACTAGCCGAACTTAAATATGATTATGTTCGTCTTCAAGGTGACATAGAAAAACGGGAATCTTTGAATTTAGATACTTCCGCACtt                                                                                                   <  2:1068937/141‑1 (MQ=255)

                                      ttAAATGCACTTAATTATATTTCAAAGGAGTGTTATAGTATGTCTTTAGAAAACCAACTAGCCGAACTTAAATATGATTATGTTCGTCTTCAAGGTGACATAGAAAAACGGGAATCTTTGAATTTAGATACTTCCGCACtt                                                                                                   >  1:579434/1‑141 (MQ=255)

                                             cACTTAATTATATTTCAAAGGAGTGTTATAGTATGTCTTTAGAAAACCAACTAGCCGAACTTAAATATGATTATGTTCGTCTTCAAGGTGACATAGAAAAACGGGAATCTTTGAATTTAGATACTGCCGCACTTGTTCGTc                                                                                            >  1:899214/1‑141 (MQ=255)

                                              aCTTAATTATATTTCAAAGGAGTGTTATAGTATGTCTTTAGAAAACCAACTAGCCGAACTTAAATATGATTATGTTCGTCTTCAAGGTGACATAGAAAAACGGGAATCTTTGAATTTAGATACTTCCGCACTTGTTCGTCa                                                                                           >  1:76153/1‑141 (MQ=255)

                                                  aaTTATATTTCAAAGGAGTGTTATAGTATGTCTTTAGAAAACCAACTAGCCGAACTTAAATATGATTATGTTCGTCTTCAAGGTGACATAGAAAAACGGGAATCTTTGAATTTAGATACTTCCGCACTTGTTCGTCAACtt                                                                                       >  2:1015595/1‑141 (MQ=255)

                                                   aTTATATTTCAAAGGAGTGTTATAGTATGTCTTTAGAAAACCAACTAGCCGAACTTAAATATGATTATGTTCGTCTTCAAGGTGACTTAGAAAAACGGGAATCTTTGAATTTAGATACTTCCGCACTTGTTCGTCAACTTa                                                                                      >  1:650723/1‑141 (MQ=255)

                                                   aTTATATTTCAAAGGAGTGTTATAGTATGTCTTTAGAAAACCAACTAGCCGAACTTAAATATGATTATGTTCGTCTTCAAGGTGACATAGAAAAACGGGAATCTTTGAATTTAGATACTTCCGCACTTGTTCGTCAACTTa                                                                                      <  1:285819/141‑1 (MQ=255)

                                                   aTTATATTTCAAAGGAGTGTTATAGTATGTCTTTAGAAAACCAACTAGCCGAACTTAAATATGATTATGTTCGTCTTCAAGGTGACATAGAAAAACGGGAATCTTTGAATTTAGATACTTCCGCACTTGTTCGTCAACTTa                                                                                      >  1:720722/1‑141 (MQ=255)

                                                    ttATATTTCAAAGGAGTGTTATAGTATGTCTTTAGAAAACCAACTAGCCGAACTTAAATATGATTATGTTCGTCTTCAAGGTGACATAGAAAAACGGGAATCTTTGAATTTAGATACTTCCGCACTTGTTCGTCAACTTaa                                                                                     >  2:885368/1‑141 (MQ=255)

                                                     tataTTTCAAAGGAGTGTTATAGTATGTCTTTAGAAAACCAACTAGCCGAACTTAAATATGATTATGTTCGTCTTCAAGGTGACATAGAAAAACGGGAATCTTTGAATTTAGATACTTCCGCACTTGTTCGTCAACTTaaa                                                                                    >  2:714540/1‑141 (MQ=255)

                                                       tatTTCAAAGGAGTGTTATAGTATGTCTTTAGAAAACCAACTAGCCGAACTTAAATATGATTATGTTCGTCTTCAAGGTGACATAGAAAAACGGGAATCTTTGAATTTAGATACTTCCGCACTTGTTCGTCAACTTAAAGa                                                                                  >  2:999472/1‑141 (MQ=255)

                                                         tttCAAAGGAGTGTTATAGTATGTCTTTAGAAAACCAACTAGCCGAACTTAAATATGATTATGTTCGTCTTCAAGGTGACATAGAAAAACGGGAATCTTTGAATTTAGATACTTCCGCACTTGTTCGTCAACTTAAAGata                                                                                <  2:852675/141‑1 (MQ=255)

                                                           tCAAAGGAGTGTTATAGTATGTCTTTAGAAAACCAACTAGCCGAACTTAAATATGATTATGTTCGTCTTCAAGGTGACATAGAAAAACGGGAATCTTTGAATTTAGATACTTCCGCACTTGTTCGTCAACTTAAAGataaa                                                                              <  2:717306/141‑3 (MQ=255)

                                                           tCAAAGGAGTGTTATAGTATGTCTTTAGAAAACCAACTAGCCGAACTTAAATATGATTATGTTCGTCTTCAAGGTGACATAGAAAAACGGGAATCTTTGAATTTAGATACTTCCGCACTTGTTCGTCAACTTAAAGATAtt                                                                              >  1:835138/1‑141 (MQ=255)

                                                           tCAAAGGAGTGTTATAGTATGTCTTTAGAAAACCAACTAGCCGAACTTAAATATGATTATGTTCGTCTTCAAGGTGACATAGAAAAACGGGAATCTTTGAATTTAGATACTTCCGCACTTGTTCGTCAACTTAAAGATAtt                                                                              >  2:741305/1‑141 (MQ=255)

                                                            cAAAGGAGTGTTATAGTATGTCTTTAGAAAACCAACTAGCCGAACTTAAATATGATTATGTTCGTCTTCAAGGTGACATAGAAAGACGGGAATCTTTGAATTTAGATACTTCCGCACTTGTTCGTCAACTTAAAGATATTg                                                                             <  1:397602/141‑1 (MQ=255)

                                                             aaaGGAGTGTTATAGTATGTCTTTAGAAAACCAACTAGCCGAACTTAAATATGATTATGTTCGTCTTCAAGGTGACATAGAAAAACGGGAATCTTTGAATTTAGATACTTCCGCACTTGTTCGTCAACTTAAAGATATTGa                                                                            >  2:313092/1‑141 (MQ=255)

                                                              aaGGAGTGTTATAGTATGTCTTTAGAAAACCAACTAGCCGAACTTAAATATGATTATGTTCGTCTTCAAGGTGACTTAGAAAAACGGGAATCTTTGAATTTAGATACTTCCGCACTTGTTCGTCAACTTAAAGATATTGaa                                                                           >  2:994596/1‑141 (MQ=255)

                                                               aGGAGTGTTATAGTATGTCTTTAGAAAACCAACTAGCCGAACTTAAATATGATTATGTTCGTCTTCAAGGTGACATAGAAAAACGGGAATCTTTGAATTTAGATACTTCCGCACTTGTTCGTCAACTTAAAGATATTGaaa                                                                          <  2:725739/141‑1 (MQ=255)

                                                                  aGTGTTATAGTATGTCTTTAGAAAACCAACTAGCCGAACTTAAATATGATTATGTTCGTCTTCAAGGTGACATAGAAAAACGGGAATCTTTGAATTTAGATACTTCCGCACTTGTTCGTCAACTTAAAGATATTGAAAATg                                                                       >  2:674586/1‑141 (MQ=255)

                                                                   gtgtTATAGTATGTCTTTAGAAAACCAACTAGCCGAACTTAAATATGATTATGTTCGTCTTCAAGGTGACATAGAAAAACGGGAATCTTTGAATTTAGATACTTCCGCACTTGTTCGTCAACTTAAAGATATTGAAAATGa                                                                      >  1:284935/1‑141 (MQ=255)

                                                                   gtgtTATAGTATGTCTTTAGAAAACCAACTAGCCGAACTTAAATATGATTATGTTCGTCTTCAAGGTGACATAGAAAAACGGGAATCTTTGAATTTAGATACTTCCGCACTTGTTCGTCAACTTAAAGATATTGAAAATGa                                                                      <  1:183902/141‑1 (MQ=255)

                                                                   gtgtTATAGTATGTCTTTAGAAAACCAACTAGCCGAACTTAAATATGATTATGTTCGTCTTCAAGGTGACATAGAAAAACGGGAATCTTTGAATTTAGATACTTCCGCACTTGTTCGTCAACTTAAAGATATTGAAAATGa                                                                      >  1:571324/1‑141 (MQ=255)

                                                                    tgtTATAGTATGTCTTTAGAAAACCAACTAGCCGAACTTAAATATGATTATGTTCGTCTTCAAGGTGACATAGAAAAACGGGAATCTTTGAATTTAGATACTTCCGCACTTGTTCGTCAACTTAAAGATATTGAAAATGaa                                                                     >  1:1002324/1‑141 (MQ=255)

                                                                    tgtTATAGTATGTCTTTAGAAAACCAACTAGCCGAACTTAAATATGATTATGTTCGTCTTCAAGGTGACATAGAAAAACGGGAATCTTTGAATTTAGATACTTCCGCACTTGTTCGTCAACTTAAAGATATTGAAAATGaa                                                                     <  2:1030306/141‑1 (MQ=255)

                                                                     gtTATAGTATGTCTTTAGAAAACCAACTAGCCGAACTTAAATATGATTATGTTCGTCTTCAAGGTGACATAGAAAAACGGGAATCTTTGAATTTAGATACTTCCGCACTTGTTCGTCAACTTAAAGATATTGAAAATGaaa                                                                    >  1:479628/1‑141 (MQ=255)

                                                                     gtTATAGTATGTCTTTAGAAAACCAACTAGCCGAACTTAAATATGATTATGTTCGTCTTCAAGGTGACATAGAAAAACGGGAATCTTTGAATTTAGATACTTCCGCACTTGTTCGTCAACTTAAAGATATTGAAAATGaaa                                                                    >  1:765781/1‑141 (MQ=255)

                                                                      ttATAGTATGTCTTTAGAAAACCAACTAGCCGAACTTAAATATGATTATGTTCGTCTTCAAGGTGACATAGAAAAACGGGAATCTTTGAATTTAGATACTTCCGCACTTGTTCGTCAACTTAAAGATATTGAAAATGAAAt                                                                   >  2:770995/1‑141 (MQ=255)

                                                                      ttATAGTATGTCTTTAGAAAACCAACTAGCCGAACTTAAATATGATTATGTTCGTCTTCAAGGTGACATAGAAAAACGGGAATCTTTGAATTTAGATACTTCCGCACTTGTTCGTCAACTTAAAGATATTGAAAATGAAAt                                                                   >  2:193544/1‑141 (MQ=255)

                                                                      ttATAGTATGTCTTTAGAAAACCAACTAGCCGAACTTAAATATGATTATGTTCGTCTTCAAGGTGACATAGAAAAACGGGAATCTTTGAATTTAGATACTTCCGCACTTGTTCGTCAACTTAAAGATATTGAAAATGAAAt                                                                   >  1:306008/1‑141 (MQ=255)

                                                                        ataGTATGTCTTTAGAAAACCAACTAGCCGAACTTAAATATGATTATGTTCGTCTTCAAGGTGACATAGAAAAACGGGAATCTTTGAATTTAGATACTTCCGCACTTGTTCGTCAACTTAAAGATATTGAAAATGAAATTa                                                                 <  1:8019/141‑1 (MQ=255)

                                                                            tATGTCTTTAGAAAACCAACTAGCCGAACTTAAATATGATTATGTTCGTCTTCAAGGTGACATAGAAAAACGGGAATCTTTGAATTTAGATACTTCCGCACTTGTTCGTCAACTTAAAGATATTGAAAATGAAATTAGaaa                                                             <  2:40914/141‑1 (MQ=255)

                                                                              tGTCTTTAGAAAACCAACTAGCCGAACTTAAATATGATTATGTTCGTCTTCAAGGTGACATAGAAAAACGGGAATCTTTGAATTTAGATACTTCCGCACTTGTTCGTCAACTTAAAGATATTGAAAATGAAATTAGAAACg                                                           <  1:149381/141‑1 (MQ=255)

                                                                                tCTTTAGAAAACCAACTAGCCGAACTTAAATATGATTATGTTCGTCTTCAAGGTGACATAGAAAAACGGGAATCTTTGAATTTAGATACTTCCGCACTTGTTCGTCAACTTAAAGATATTGAAAATGAAATTAGAAACGtt                                                         >  1:638634/1‑141 (MQ=255)

                                                                                  tttGGAAAACCAACTAGCCGAACTTAAATATGATTATGTTCGTCTTCAAGGTGACATAGAAAAACGGGAATCTTTGAATTTAGATACTTCCGCACTTGTTCGTCAACTTAAAGATATTGAAAATGAAATTAGAAACGTTCg                                                       <  2:745454/141‑1 (MQ=255)

                                                                                  tttAGAAAACCAACTAGCCGAACTTAAATATGATTATGTTCGTCTTCAAGGTGACATAGAAAAACGGGAATCTTTGAATTTAGATACTTCCGCACTTGTTCGTCAACTTAAAGATATTGAAAATGAAATTAGAAACGTTCg                                                       <  1:621455/141‑1 (MQ=255)

                                                                                   ttAGAAAACCAACTAGCCGAACTTAAATATGATTATGTTCGTCTTCAAGGTGACATAGAAAAACGGGAATCTTTGAATTTAGATACTTCCGCACTTGTTCGTCAACTTAAAGATATTGAAAATGAAATTAGAAACGTTCGt                                                      >  1:952496/1‑141 (MQ=255)

                                                                                   ttAGAAAACCAACTAGCCGAACTTAAATATGATTATGTTCGTCTTCAAGGTGACATAGAAAAACGGGAATCTTTGAATTTAGATACTTCCGCACTTGTTCGTCAACTTAAAGATATTGAAAATGAAATTAGAAACGTTCGt                                                      >  2:675275/1‑141 (MQ=255)

                                                                                    tAGAAAACCAACTAGCCGAACTTAAATATGATTATGTTCGTCTTCAAGGTGACATAGAAAAACGGGAATCTTTGAATTTAGATACTTCCGCACTTGTTCGTCAACTTa                                                                                      <  1:645922/108‑1 (MQ=255)

                                                                                    tAGAAAACCAACTAGCCGAACTTAAATATGATTATGTTCGTCTTCAAGGTGACATAGAAAAACGGGAATCTTTGAATTTAGATACTTCCGCACTTGTTCGTCAACTTa                                                                                      >  2:645922/1‑108 (MQ=255)

                                                                                       aaaaCCAACTAGCCGAACTTAAATATGATTATGTTCGTCTTCAAGGTGACATAGAAAAACGGGAATCTTTGAATTTAGATACTTCCGCACTTGTTCGTCAACTTAAAGATATTGAAAATGAAATTAGAAACGTTCGTGCTc                                                  >  2:424970/1‑141 (MQ=255)

                                                                                        aaaCCAACTAGCCGAACTTAAATATGATTATGTTCGTCTTCAAGGTGACATAGAAAAACGGGAATCTTTGAATTTAGATACTTCCGCACTTGTTCGTCAACTTAAAGATATTGAAAATGAAATTAGAAACGTTCGTGCTCa                                                 >  2:504949/1‑141 (MQ=255)

                                                                                         aaCCAACTAGCCGAACTTAAATATGATTATGTTCGTCTTCAAGGTGACATAGAAAAACGGGAATCTTTGAATTTAGATACTTCCGCACTTGTTCGTCAACTTAAAGATATTGAAAATGAAATTAGAAACGTTCGTGCTCaa                                                >  1:744643/1‑141 (MQ=255)

                                                                                         aaCCAACTAGCCGAACTTAAATATGATTATGTTCGTCTTCAAGGTGACATAGAAAAACGGGAATCTTTGAATTTAGATACTTCCGCACTTGTTCGTCAACTTAAAGATATTGAAAATGAAATTAGAAACGTTCGTGCTCaa                                                >  2:617707/1‑141 (MQ=255)

                                                                                           ccAACTAGCCGAACTTAAATATGATTATGTTCGTCTTCAAGGTGACATAGAAAAACGGGAATCTTTGAATTTAGATACTTCCGCACTTGTTCGTCAACTTAAAGATATTGAAAATGAAATTAGAAACGTTCGTGCTCAAAt                                              >  1:76245/1‑141 (MQ=255)

                                                                                             aaCTAGCCGAACTTAAATATGATTATGTTCGTCTTCAAGGTGACATAGAAAAACGGGAATCGTTGAATTTAGATACTTCCGCACTTGTTCGTCAACTTAAAGATATTGAAAATGAAATTAGAAACGTTCGTGCTCAAATGc                                            <  1:18843/141‑1 (MQ=255)

                                                                                              aCTAGCCGAACTTAAATATGATTATGTTCGTCTTCAAGGTGACATAGAAAAACGGGAATCTTTGAATTTAGATACTTCCGAACTTGTTCGTCAACTTAAAGATATTGAAAATGAAATTAGAATCGGTCGTGCTCAAATGCa                                           <  1:432370/141‑1 (MQ=255)

                                                                                               cTAGCCGAACTTAAATATGATTATGTTCGTCTTCAAGGTGACTTAGAAAAACGGGAATCTTTGAATTTAGATACTTCCGCACTTGTTCGTCAACTTAAAGATATTGAAAATGAAATTAGAAACGTTCGCGCTCAAATGCaa                                          <  2:86163/141‑1 (MQ=255)

                                                                                                tAGCCGAACTTAAATATGATTATGTTCGTCTTCAAGGTGACATAGAAAAACGGGAATCTTTGAATTTAGATACTTCCGCACTTGTTCGTCAACTTAAAGATATTGAAAATGAAATTAGAAACGTTCGTGCTCAAATGCAAg                                         <  1:124659/141‑1 (MQ=255)

                                                                                                tAGCCGAACTTAAATATGATTATGTTCGTCTTCAAGGTGACATAGAAAAACGGGAATCTTTGAATTTAGATACTTCCGCACTTGTTCGTCAACTTAAAGATATTGAAAATGAAATTAGAAACGTTCGTGCTCAAATGCAAg                                         >  1:137956/1‑141 (MQ=255)

                                                                                                   ccGAACTTAAATATGATTATGTTCGTCTTCAAGGTGACATAGAAAAACGGGAATCTTTGAATTTAGATACTTCCGCACTTGTTCGTCAACTTAAAGATATTGAAAATGAAATTAGAAACGTTCGTGCTCAAATGCAAGAtt                                      <  2:907026/141‑1 (MQ=255)

                                                                                                    cGAACTTAAATATGATTATGTTCGTCTTCAAGGTGACATAGAAAAACGGGAATCTTTGAATTTAGATACTTCCGCACTTGTTCGTCAACTTAAAGATATTGAAAATGAAATTAGAAACGTTCGTGCTCAAATGCAAGATta                                     >  2:173405/1‑141 (MQ=255)

                                                                                                     gAACTTAAATATGATTATGTTCGTCTTCAAGGTGACATAGAAAAACGGGAATCTTTGAATTTAGATACTTCCGCACTTGTTCGTCAACTTAAAGATATTGAAAATGAAATTAGAAACGTTCGTGCTCAAATGCAAGATtaa                                    >  2:6949/1‑141 (MQ=255)

                                                                                                     gAACTTAAATATGATTATGTTCGTCTTCAAGGTGACATAGAAAAACGGGAATCTTTGAATTTAGATACTTCCGCACTTGTTCGTCAACTTAAAGATATTGAAAATGAAATTAGAAACGTTCGTGCTCAAATGCAAGATtaa                                    >  1:593972/1‑141 (MQ=255)

                                                                                                         ttAAATATGATTATGTTCGTCTTCAAGGTGACATAGAAAAACGGGAATCTTTGAATTTAGATACTTCCGCACTTGTTCGTCAACTTAAAGATATTGAAAATGAAATTAGAAACGTTCGTGCTCAAATGCAAGATTaataat                                <  2:246845/141‑1 (MQ=255)

                                                                                                            aaTATGATTATGTTCGTCTTCAAGGTGACATAGAAAAACGGGAATCTTTGAATTTAGATACTTCCGCACTTGTTCGTCAACTTAAAGATATTGAAAATGAAATTAGAAACGTTCGTGCTCAAATGCAAGATTAATAATCTa                             <  1:674586/141‑1 (MQ=255)

                                                                                                            aaTATGATTATGTTCGTCTTCAAGGTGACATAGAAAAACGGGAATCTTTGAATTGAGATACTTCCGCACTTGTTCGTCAACTTAAAGATATTGAAAATGAAATTAGAAACGTTCGTGCTCAAATGCAAGATTAATAATCTa                             <  2:863717/141‑1 (MQ=255)

                                                                                                            aaTATGATTATGTTCGTCTTCAAGGTGACATAGAAAAACGGGAATCTTTGAATTGAGATACTTCCGCACTTGTTCGTCAACTTAAAGATATTGAAAATGAAATTAGAAACGTTCGTGCTCAAATGCAAGATTAATAATCTa                             <  2:863708/141‑1 (MQ=255)

                                                                                                             atatGATTATGTTCGTCTTCAAGGTGACATAGAAAAACGGGAATCTTTGAATTTAGATACTTCCGCACTTGTTCGTCAACTTAAAGATATTGAAAATGAAATTAGAAACGTTCGTGCTCAAATGCAAGATTAATAATCTAt                            >  1:106428/1‑141 (MQ=255)

                                                                                                              tatGATTATGTTCGTCTTCAAGGTGACATAGAAAAACGGGAATCTTTGAATTTAGATACTTCCGCACTTGTTCGTCAACTTAAAGATATTGAAAATGAAATTAGAAACGTTCGTGCTCAAATGCAAGATTAATAATCTAtt                           >  2:614355/1‑140 (MQ=255)

                                                                                                               atGATTATGTTCGTCTTCAAGGTGACATAGAAAAACGGGAATCTTTGAATTTAGATACTTCCGCACTTGTTCGTCAACTTAAAGATATTGAAAATGAAATTAGAAACGTTCGTGCTCAAATGCAAGATTAATAATCTATCa                          >  1:466605/1‑141 (MQ=255)

                                                                                                                tGATTATGTTCGTCTTCAAGGTGACATAGAAAAACGGGAATCTTTGAATTTAGATACTTCCGCACTTGTTCGTCAACTTAAAGATATTGAAAATGAAATTAGAAACGTTCGTGCTCAAATGCAAGATTAATAATCTATCAt                         >  2:752198/1‑141 (MQ=255)

                                                                                                                tGATTATGTTCGTCTTCAAGGTGACATAGAAAAACGGGAATCTTTGAATTTAGATACTTCCGCACTTGTTCGTCAACTTAAAGATATTGAAAATGAAATTAGAAACGTTCGTGCTCAAATGCAAGATTAATAATCTATCAt                         <  2:999312/141‑1 (MQ=255)

                                                                                                                  aTTATGTTCGTCTTCAAGGTGACATAGAAAAACGGGAATCTTTGAATTTAGATACTTCCGCACTTGTTCGTCAACTTAAAGATATTGAAAATGAAATTAGAAACGTTCGTGCTCAAATGCAAGATTAATAATCTATCATTc                       >  2:237057/1‑141 (MQ=255)

                                                                                                                          cGTCTTCAAGGTGACATAGAAAAACGGGAATCTTTGAATTTAGATACTTCCGCACTTGTTCGTCAACTTAAAGATATTGAAAATGAAATTAGAAACGTTCGTGCTCAAATGCAAGATTAATAATCTATCATTCAAGCAATa               >  2:268841/1‑141 (MQ=255)

                                                                                                                          cGTCTTCAAGGTGACATAGAAAAACGGGAATCTTTGAATTTAGATACTTCCGCACTTGTTCGTCAACTTAAAGATATTGAAAATGAAATTAGAAACGTTCGTGCTCAAATGCAAGATTAATAATCTATCATTCAAGCAATa               <  1:979076/141‑1 (MQ=255)

                                                                                                                             cTTCAAGGTGACATAGAAAAACGGGAATCTTTGAATTTAGATACTTCCGCCCTTGTTCGTCAACTTAAAGATACTGAAAATGAAATTAGAAACTTTCGTGCTCAAATGCAAGATTAATAATCTATCATTCAAGCAATAAAt            <  1:213941/141‑1 (MQ=255)

                                                                                                                             cTTCAAGGTGACATAGAAAAACGGGAATCTTTGAATTTAGATACTTCCGCACTTGTTCGTCAACTTAAAGATATTGAAAATGAAATTAGAAACGTTCGTGCTCAAATGCAAGATTAATAATCTATCATTCAAGCAATAAAt            >  1:205325/1‑141 (MQ=255)

                                                                                                                               tCAAGGTGACATAGAAAAACGGGAATCTTTGAATTTAGATACTTCCGCACTTGTTCGTCAACTTAAAGATATTGAAAATGAAATTAGAAACGTTCGTGCTCAAATGCAAGATTAATAATCTATCATTCAAGCAATAAATGc          <  2:10901/141‑1 (MQ=255)

                                                                                                                               tCAAGGTGACATAGAAAAACGGGAATCTTTGAATTTAGATACTTCCGCACTTGTTCGTCAACTTAAAGATATTGAAAATGAAATTAGAAACGTTCGTGCTCAAATGCAAGATTAATAATCTATCATTCAAGCAATAAATGc          <  2:684901/141‑1 (MQ=255)

                                                                                                                                cAAGGTGACATAGAAAAACGGGAATCTTTGAATTTAGATACTTCCGCACTTGTTCGTCAACTTAAAGATATTGAAAATGAAATTAGAAACGTTCGTGCTCAAATGCAAGATTAATAATCTATCATTCAAGCAATAAATGCt         >  1:383030/1‑141 (MQ=255)

                                                                                                                                       aCATAGTAAAACGGGAATCTTTGAATTTAGATACTTCCGCACTTGTTCGTCAACTTAAAGATATTGAAAATGAAATTAGAAACGTTCGTGCTCAAATGCAAGATTAATAATCTATCATTCAAGCAATAAATGCTTTTTGtt  >  1:745571/1‑141 (MQ=255)

ATATTTTAGAAGTCTACTGTTTCATGCTATAATCTACATTAAATGCACTTAATTATATTTCAAAGGAGTGTTATAGTATGTCTTTAGAAAACCAACTAGCCGAACTTAAATATGATTATGTTCGTCTTCAAGGTGACATAGAAAAACGGGAATCTTTGAATTTAGATACTTCCGCACTTGTTCGTCAACTTAAAGATATTGAAAATGAAATTAGAAACGTTCGTGCTCAAATGCAAGATTAATAATCTATCATTCAAGCAATAAATGCTTTTTGTT  >  CP000730/2379524‑2379799

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`