| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP000730 | 211,621 | G→A | 6.4% | intergenic (+179/+149) | USA300HOU_0193 → / ← USA300HOU_0194 | possible holo‑[acyl‑carrier‑protein] synthase/hypothetical membrane protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP000730 | 211,621 | 0 | G | A | 6.4% | 318.9 / 4.6 | 104 | intergenic (+179/+149) | USA300HOU_0193/USA300HOU_0194 | possible holo‑[acyl‑carrier‑protein] synthase/hypothetical membrane protein |
| Reads supporting (aligned to +/- strand): ref base G (44/52); new base A (4/3); total (49/55) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 7.02e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 106 total aligned reads displayed.
TACTGCCTAAATGTTTACTGTTAGATGTTTTTTTATTGGAAAAATGAAAGGTGAATACACGATGGCATCATTCAAAATCATGACGAGATTAAAGTAAGTGATAAGGTAAAAATATACTGAGCAATATTGAAATTACCGAAAATAATAGTTTGTTACGACGCATTTGAGACTTTAATGCTCACGTAAGTTGGCTGGAATCATATCATGTCAGTTAATAAAATAACGTGAGCATCAATCATCATACTCAAACGATGATTTAAAACTCACGTTAATGTTAG > CP000730/211484‑211761 | taCTGCCTAAATGTTTACTGTTAGATGTTTTTTTTTTTTTTTAATGAAAGGTGAATACACGATGGCATCATTCAAAATCATGACGAGATTAAAGTAAGTGATAAGGTAAAAATATACTGAGCAATATTGAAATTACCGaaa > 2:513333/1‑141 (MQ=255) tttttcTAAATGTTTACTGTTAGATGTTTTTTTATTGGAAAAATGAAAGGTGAATACACGATGGCATCATTCAAAATCATGACGAGATTAAAGTAAGTGATAAGGTAAAAATATACTGAGCAATATTGAAATTACCGaaaa < 2:40122/136‑1 (MQ=255) aCTGGCTAAATATTTACTGTTAGATGTTTTTATATTGGAAAAATGAAAGGTGAATACACGATGGCATCATTCAAAATCATGACGAGATTAAAGTAAGTGATAAGGTAAAAATATACTGAGCAATATTGAAATTACCGaaaa < 2:178701/141‑1 (MQ=255) aCTGCCTAAATGTTTACTGTTAGATGTTTTTTTATTGGAAAAATGAAAGGTGAATACACGATGGCATCATTCAAAATCATGACGAGATTAAAGTAAGTGATAAGGTAAAAATATACTGAGCAATATTGAAATTACCGaaaa < 2:375055/141‑1 (MQ=255) aCTGCCTAAATGTTTACTGTTAGATGTTTTTTTATTGGAAAAATGAAAGGTGAATACACGATGGCATCATTCAAAATCATGACGAGATTAAAGTAAGTGATAAGGTAAAAATATACTGAGCAATATTGAAATTACCGaaaa < 2:142109/141‑1 (MQ=255) cTGCCTAAATGTTTACTGTTAGATGTTTTTTTATTGGAAAAATGAAAGGTGAATACACGATGGCATCATTCAAAATCATGACGAGATTAAAGTAAGTGATAAGGTAAAAATATACTGAGCAATATTGAAATTACCGAAaat < 2:939609/141‑1 (MQ=255) gCCTAAATGTTTACTGTTAGATGTTTTTTTATTGGAAAAATGAAAGGTGAATACACGATGGCATCATTCAAAATCATGACGAGATTAAAGTAAGTGATAAGGTAAAAATATACTGAGCAATATTGAAATTACCGAAaataa < 2:1010476/141‑1 (MQ=255) ccTAAATGTTTACTGTTAGATGTTTTTTTATTGGAAAAATGAAAGGTGAATACACGATGGCATCATTCAAAATCATGACGAGATTAAAGTAAGTGATAAGGTAAAAATATACTGAGCAATATTGAAATTACCGAAaataat > 1:295492/1‑141 (MQ=255) aaTGTTTTCTGTAAGAAGATTTTTTATTGGAAAAATGAAAGGTGAATACACGATGGCATCATTCAAAATCATGACGAGATTAAAGTAAGTGATAAGGTAAAAATATACAGAGAAATAAACAAAAAAACAAATATAATAGtt < 2:766875/141‑1 (MQ=255) tGTTTACTGTTAGATGTTTTTTTTTTTTTTTTTTTAAAGGAGAATACACGCTGGCTTTATTCAAAATCATGACGAGATTAAAGTAAGTGATAAGGTAAAAATATACTAAGCAATATTGAAATTACCGATTTTATTAGtttt > 2:703580/1‑140 (MQ=255) tGTTTACTGTTAGATGTATTTTTATTGGAAAAATGAAAGGTGAATACACGATGGCATCATTCAAAATCATGACGAGATTAATGTAAGTGATAAGGTGAAAATATACTGAGCAATATTGAAATTGCCAAAAataatatcttg < 2:696612/141‑6 (MQ=255) tttACTGTTAGATGTTTTTTTATTGGAAAAATGAAAGGTGAATACACGATGGCATCATTCAAAATCATGACGAGATTAAAGTAAGTGATAAGGTAAAAATATACTGAGCAATATTGAAATTACCGAAAATAATAGTTTGtt > 1:939728/1‑141 (MQ=255) ttACTGTTAGATGTTTTTTTTTTTTTTTTATGAAAGGTGAATACACGATGGCATCATTCAAAATCATGACGAGATGAAAGTAAGTGATAAGGTAAAAATATACTGAGCAATATTGAAATTACCGAAAATAATAGTTTGTTa > 2:309878/1‑141 (MQ=255) ttACTGTTAGATGTTTTTTTATTGGAAAAATGAAAGGTGAATACACGATGGCATCATTCAAAATCATGACGAGATTAAAGTAAGTGATAAGGTAAAAATATACTGAGCAATATTGAAATTACCGAAAATAATAGTTTGTTa > 1:115623/1‑141 (MQ=255) tACTGTTAGATGTATTTTTATTGGAAAAATGAAAGGTGAATACATGATGGCATCATTCAAAATCATGACGAGATTAATGTAAGTGATAAGGTGAAAATATACTGAGCAATATTGAAATTGCCAAAAATAATATCTTGTTac < 1:415987/141‑1 (MQ=255) aCTGTTAGATGTATTTTTATTGGAAAAATGAAAGGTGAATACACGATGGCATCATTCAAAATCATGACGAGATTAATGTAAGTGATAAGGTGAAAATATACTGAGCAATATTGAAATTGCCAAAAATAATATCTTGTTacg > 1:352992/1‑141 (MQ=255) cTGTTAGATGTTTTTTTATTGGAAAAATGAAAGGTGAATACACGATGGCATCATTCAAAATCATGACGAGATTAAAGTAAGTGATAAGGTAAAAATATACTGAGCAATATTGAAATTACCGAAAATAATAGTTTGTTacga < 2:955671/141‑1 (MQ=255) tGTTAGATGTATTTTTATTGGAAAAATGAAAGGTGAATACACGATGGCATCATTCAAAATCATGACGAGATTAATGTAAGTGATAAGGTGAAAATATACTGAGCAATATTGAAATTGCCAAAAATAATATCTTGTTacgac > 1:485488/1‑141 (MQ=255) gTTAGATGTTTTTTTATTGGAAAAATGAAAGGTGAATACACGATGGCATCATTCAAAATCATGACGAGATTAAAGTAAGTGATAAGGTAAAAATCTACTGCGCAATAGTGAAATTACCGAAAATAATAGTTTGTTacgacg > 2:555386/1‑141 (MQ=255) gTTAGATGTTTTTTTATTGGAAAAATGAAAGGTGAATACACGATGGCATCATTCAAAATCATGACGAGATTAAAGTAAGTGATAAGGTAAAAATATACTGAGCAATATTGAAATTACCGAAAATAATAGTTTGTTacgacg < 1:75742/141‑1 (MQ=255) gTTAGATGTTTTTTTATTGGAAAAATGAAAGGTGAATACACGATGGCATCATTCAAAATCATGACGAGATTAAAGTAAGTGATAAGGTAAAAATATACTGAGCAATATTGAAATTACCGAAAATAATAGTTTGTTacgacg < 1:338589/141‑1 (MQ=255) gTTAGATGTTTTTTTATTGGAAAAATGAAAGGTGAATACACGATGGCATCATTCAAAATCATGACGAGATTAAAGTAAGAAAAAAAAAAAAAATATACTGAGCAATATTGAAATTACCGAAAATAATAGTTTGTTacgacg < 2:445470/141‑1 (MQ=255) aTGTTTTTTTATTGGAAAAATGAAAGGTGAATACACGATGGCATCATTCAAAATCATGACGAGATTAAAGTAAGTGATAAGGTAAAAATATACTGAGCAATATTGAAATTACCGAAAATAATAGTTTGTTACGACGCAttt > 1:682973/1‑141 (MQ=255) aTGTTTTTTTATTGGAAAAATGAAAGGTGAATACACGATGGCATCATTCAAAATCATGACGAGATTAAAGTAAGTGATAAGGTAAAAATATACTGAGCAATATTGAAATTACCGAAAATAATAGTTTGTTACGACGCAttt > 2:875502/1‑141 (MQ=255) tttttATTGGAAAAATGAAAGGTGAATACACGATGGCATCATTCAAAATCATGACGAGATTAAAGTAAGTGATAAGGTAAAAATATACTGAGCAATATTGAAATTACCGAAAATAATAGTTTGTTACGACGCATTTGAGAc > 1:112046/1‑141 (MQ=255) tGGAAAAATGAAAGGTGAATACACGATGGCATCATTCAAAATCATGACGAGATTAAAGTAAGTGATAAGGTAAAAATATACTGAGCAATATTGAAATTACCGAAAATAATAGTTTGTTACGACGCATTTGAGACTTTAATg < 2:962829/141‑1 (MQ=255) tGGAAAAATGAAAGGTGAATACACGATGGCATCATTCAAAATCATGACGAGATTAAAGTAAGTGATAAGGTAAAAATATACTGAGCAATATTGAAATTACCGAAAATAATAGTTTGTTACGACGCATTTGAGACTTTAATg < 2:523589/141‑1 (MQ=255) tGGAAAAATGAAAGGTGAATACACGATGGCATCATTCAAAATCATGACGAGATTAAAGTAAGTGATAAGGTAAAAATATACTGAGCAATATTGAAATTACCGAAAATAATAGTTTGTTACGACGCATTTGAGACTTTAATg < 2:310070/141‑1 (MQ=255) gAAAAATGAAAGGTGAATACACGATGGCATCATTCAAAATCATGACGAGATTAAAGTAAGTGATAAGGTAAAAATATACTGAGCAATATTGAAATTACCGAAAATAATAGTTTGTTACGACGCATTTGAGACTTTAATGCt > 1:515582/1‑141 (MQ=255) aaaaTGAAAGGTGAATACACGATGGCATCATTCAAAATCATGACGAGATTAAAGTAAGTGATAAGGTAAAAATATACTGAGCAATATTGAAATTACCGAAAATAATAGTTTGTTACGACGCATTTGAGACTTTAATGCTCa < 1:697431/141‑1 (MQ=255) aaaaTGAAAGGTGAATACACGATGGCATCATTCAAAATCATGACGAGATTAAAGTAAGTGATAAGGTAAAAATATACTGAGCAATATTGAAATTACCGAAAATAATAGTTTGTTACGACGCATTTGAGACTTTAATGCTCa < 1:697363/141‑1 (MQ=255) tGAAAGGTGAATACACGATGGCATCATTCAAAATCATGACGAGATTAAAGTAAGTGATAAGGTAAAAATATACTGAGCAATATTGAAATTACCGAAAATAATAGTTTGTTACGACGCATTTGAGACTTTAATGCTCACGTa > 2:448576/1‑141 (MQ=255) gAAAGGTGAATACACGATGGCATCATTCAAAATCATGACGAGATTAAAGTAAGTGATAAGGTAAAAATATACTGAGCAATATTGAAATTACCGAAAATAATAGTTTGTTACGACGCATTTGAGACTTTAATGCTCACGTaa > 2:547017/1‑141 (MQ=255) gAAAGGTGAATACACGATGGCATCATTCAAAATCATGACGAGATTAAAGTAAGTGATAAGGTAAAAATATACTGAGCAATATTGAAATTACCGAAAATAATAGTTTGTTACGACGCATTTGAGACTTTAATGCTCACGTaa > 2:928724/1‑141 (MQ=255) aaaGGTGAATACACGATGGCATCATTCAAAATCATGACGAGATTAAAGTAAGTGATAAGGTAAAAATATACTGAGCAATATTGAAATTACCGAAAATAATAGTTTGTTACGACGCATTTGAGACTTTAATGCTCACGttat > 2:403971/1‑138 (MQ=255) aaaGGTGAATACACGATGGCATCATTCAAAATCATGACGAGATTAAAGTAAGTGATAAGGTAAAAATATACTGAGCAATATTGAAATTACCGAAAATAATAGTTTGTTACGACGCATTTGAGACTTTAATGCTCACGTaa > 1:989546/1‑140 (MQ=255) aaGGTGAATACACGATGGCATCATTCAAAATCATGACGAGATTAAAGTAAGTGATAAGGTAAAAATATACTGAGCAATATTGAAATTACCGAAAATAATAGTTTGTTACGACGCATTTGAGACTTTAATGCTCACGTAAGt > 2:176450/1‑141 (MQ=255) aaGGTGAATACACGATGGCATCATTCAAAATCATGACGAGATTAAAGTAAGTGATAAGGTAAAAATATACTGAGCAATATTGAAATTACCGAAAATAATAGTTTGTTACGACGCATTTGAGACTTTAATGCTCACGTAAGt > 2:843267/1‑141 (MQ=255) aaGGTGAATACACGATGGCATCATTCAAAATCATGACGAGATTAAAGTAAGTGATAAGGTAAAAATATACTGAGCAATATTGAAATTACCGAAAATAATAGTTTGTTACGACGCATTTGAGACTTTAATGCTCACGTAAGt > 2:729291/1‑141 (MQ=255) aaGGTGAATACACGATGGCATCATTCAAAATCATGACGAGATTAAAGTAAGTGATAAGGTAAAAATATACTGAGCAATATTGAAATTACCGAAAATAATAGTTTGTTACGACGCATTTGAGACTTTAATGCTCACGTAAGt < 2:939728/141‑1 (MQ=255) aaGGTGAATACACGATGGCATCATTCAAAATCATGACGAGATTAAAGTAAGTGATAAGGTAAAAATATACTGAGCAATATTGAAATTACCGAAAATAATAGTTTGTTACGACGCATTTGAGACTTTAATGCTCACGTAAGt > 1:388603/1‑141 (MQ=255) ggTGAATACACGATGGCATCATTCAAAATCATGACGAGATTAAAGTAAGTGATAAGGTAAAAATATACTGAGCAATATTGAAATTACCGAAAATAATAGTTTGTTACGACGNATTNGAGACTTTNATGCTCACGTAAGTTg < 1:1016930/141‑1 (MQ=255) ggTGAATACACGATGGCATCATTCAAAATCATGACGAGATTAAAGTAAGTGATAAGGTAAAAATATACTGAGCAATATTGAAATTACCGAAAATAATAGTTTGTTACGACGCATTTGAGACTTTAATGCTCACGTAAGTTg > 1:493853/1‑141 (MQ=255) aaTACACGATGGCATCATTCAAAATCATGACGAGATTAAAGTAAGTGATAAGGTAAAAATATACTGAGCAATATTGAAATTACCGAAAATAATAGTTTGTTACGACGCATTTGAGACTTTAATGCTCACGTAAGTTGGCTg < 2:25067/141‑1 (MQ=255) aTACACGATGGCATCATTCAAAATCATGACGAGATTAAAGTAAGTGATAAGGTAAAAATATACTGAGCAATATTGAAATTACCGAAAATAATAGTTTGTTACGACGCATTTGAGACTTTAATGCTCACGTAAGTTGGCTgg > 2:138453/1‑141 (MQ=255) tACACGATGGCATCATTCAAAATCATGACGAGATTAAAGTAAGTGATAAGGTAAAAATATACTGAGCAATATTGAAATTACCGAAAATAATAGTTTGTTACGACGCATTTGAGACTTTAATGCTCACGTAAGTTGGCTGGa < 1:549217/141‑1 (MQ=255) tACACGATGGCATCATTCAAAATCATGACGAGATTAAAGTAAGTGATAAGGTAAAAATATACTGAGCAATATTGAAATTACCGAAAATAATAGTTTGTTACGACGCATTTGAGACTTTAATGCTCACGTAAGTTGGCTGGa < 1:802295/141‑1 (MQ=255) tACACGATGGCATCATTCAAAATCATGACGAGATTAAAGTAAGTGATAAGGTAAAAATATACTGAGCAATATTGAAATTACCGAAAATAATAGTTTGTTACGACGCATTTGAGACTTTAATGCTCACGTAAGTTGGCTGGa < 2:493853/141‑1 (MQ=255) tACACGATGGCATCATTCAAAATCATGACGAGATTAAAGTAAGTGATAAGGTAAAAATATACTGAGCAATATTGAAATTACCGAAAATAATAGTTTGTTACGACGCATTTGAGACTTTAATGCTCACGTAAGTTGGCTGGa > 1:805977/1‑141 (MQ=255) cacGATGGCATCATTCAAAATCATGACGAGATTAAAGTAAGTGATAAGGTAAAAATATACTGAGCAATATTGAAATTACCGAAAATAATAGTTTGTTACGACGCATTTGAGACTTTAATGCTCACGTAAGTTGGCTGGAat > 1:194272/1‑141 (MQ=255) acGATGGCATCATTCAAAATCATGACGAGATTAAAGTAAGTGATAAGGTAAAAATATACTGAGCAATATTGAAATTACCGAAAATAATAGTTTGTTACGACGCATTTGAGACTTTAATGCTCACGTAAGTTGGCTGGAatc < 2:756780/141‑1 (MQ=255) tGGCATCATTCAAAATCATGACGAGATTAAAGTAAGTGATAAGGTAAAAATATACTGAGCAATATTGAAATTACCGAAAATAATAGTTTGTTACGACGCATTTGAGACTTTAATGCTCACGTAAGTTGGCTGGAatcatat < 1:483751/141‑1 (MQ=255) tGGCATCATTCAAAATCATGACGAGATTAAAGTAAGTGATAAGGTAAAAATATACTGAGCAATATTGAAATTACCGAAAATAATAGTTTGTTACGACGCATTTGAGACTTTAATGCTCACGTAAGTTGGCTGGAatcatat > 2:63408/1‑141 (MQ=255) tGGCATCATTCAAAATCATGACGAGATTAAAGTAAGTGATAAGGTAAAAATATACTGAGCAATATTGAAATTACCGAAAATAATAGTTTGTTACGACGCATTTGAGACTTTAATGCTCACGTAAGTTGGCTGGAatcatat > 2:22219/1‑141 (MQ=255) atcatTCAAAATCATGACGAGATTAAAGTAAGTGATAAGGTAAAAATATACTGAGCAATATTGAAATTACCGAAAATAATAGTTTGTTACGACGCATTTGAGACTTTAATGCTCACGTAAGTTGGCTGGAATCATATCATg > 2:492966/1‑141 (MQ=255) tcatTCAAAATCATGACGAGATTAAAGTAAGTGATAAGGTAAAAATATACTGAGCAATATTGAAATTACAGAAAATAATAGTTTGTTACGACGCATTTGAGACTTTAATGCTCACGTAAGTTGGCTGGAATCATATCATGt > 2:207587/1‑141 (MQ=255) catTCAAAATCATGACGAGATTAAAGTAAGTGATAAGGTAAAAATATACTGAGCAATATTGAAATTACCGAAAATAATAGTTTGTTACGACGCATTTGAGACTTTAATGCTCACGTAAGTTGGCTGGAATCATATCATGTc < 1:239549/141‑1 (MQ=255) catTCAAAATCATGACGAGATTAAAGTAAGTGATAAGGTAAAAATATACTGAGCAATATTGAAATTACCGAAAATAATAGTTTGTTACGACGCATTTGAGACTTTAATGCTCACGTAAGTTGGCTGGAATCATATCATGTc < 2:781349/141‑1 (MQ=255) atTCAAAATCATGACGAGATTAAAGTAAGTGATAAGGTAAAAATATACTGAGCAATATTGAAATTACCGAAAATAATAGTTTGTTACGACGCATTTGAGACTTTAATGCTCACGTAAGTTGGCTGGAATCATATCATGTCa < 1:12389/141‑1 (MQ=255) ttCAAAATCATGACGAGATTAAAGTAAGTGATAAGGTAAAAATATACTGAGCAATATTGAAATTACCGAAAATAATAGTTTGTTACGACGCATTTGAGACTTTAATGCTCACGTAAGTTGGCTGGAATCATATCATGTCAg < 1:729188/141‑1 (MQ=255) aaTCATGACGAGATTAAAGTAAGTGATAAGGTAAAAATATACTGAGCAATATTGAAATTACCGAAAATAATAGTTTGTTACGACGCATTTGAGACTTTAATGCTCACGTAAGTTGGCTGGAATCATATCATGTCAGTtaat < 1:788859/141‑1 (MQ=255) cATGACGAGATTAAAGTAAGTGATAAGGTAAAAATATACTGAGCAATATTGAAATTACCGAAAATAATAGTTTGTTACGACGCATTTGAGACTTTAATGCTCACGTAAGTTGGCTGGAATCATATCATGTCAGTTaataaa < 1:817009/141‑1 (MQ=255) aTGACGAGATTAAAGTAAGTGATAAGGTAAAAATATACTGAGCAATATTGAAATTACCAAAAATAATAGTTTGTTACGACGCATTTGAGACTTTAATGCTCACGTAAGTTGGCTGGAATCATATCATGTCAGTTaataaaa > 2:159799/1‑141 (MQ=255) gACGAGATTAAAGTAAGTGATAAGGTAAAAATATACTGAGCAATATTGAAATTACCGAAAATAATAGTTTGTTACGACGCATTTGAGACTTTAATGCTCACGTAAGTTGGCTGGAATCATATCATGTCAGTTaataaaata > 1:775245/1‑141 (MQ=255) gACGAGATTAAAGTAAGTGATAAGGTAAAAATATACTGAGCAATATTGAAATTACCGAAAATAATAGTTTGTTACGACGCATTTGAGACTTTAATGCTCACGTAAGTTGGCTGGAATCATATCATGTCAGTTaataaaata > 2:260256/1‑141 (MQ=255) gACGAGATTAAAGTAAGTGATAAGGTAAAAATATACTGAGCAATATTGAAATTACCGAAAATAATAGTTTGTTACGACGCATTTGAGACTTTAATGCTCACGTAAGTTGGCTGGAATCATATCATGTCAGTTaataaaata > 1:855531/1‑141 (MQ=255) aCGAGATTAAAGTAAGTGATAAGGTAAAAATATACTGAGCAATATTGAAATTACCGAAAATAATAGTTTGTTACGACGCATTTGAGACTTTAATGCTCACGTAAGTTGGCTGGAATCATATCATGTCAGTTaataaaataa > 1:736282/1‑141 (MQ=255) aCGAGATTAAAGTAAGTGATAAGGTAAAAATATACTGAGCAATATTGAAATTACCGAAAATAATAGTTTGTTACGACGCATTTGAGACTTTAATGCTCACGTAAGTTGGCTGGAATCATATCATGTCAGTTaataaaataa > 2:159050/1‑141 (MQ=255) ttAAAGTAAGTGATAAGGTAAAAATATACTGAGCAATATTGAAATTACCGAAAATAATAGTTTGTTACGACGCATTTGAGACTTTAATGCTCACGTAAGTTGGCTGGAATCATATCATGTCAGTTAATAAAATAACGTGAg < 2:682973/141‑1 (MQ=255) aaaGTAAGTGATAAGGTAAAAATATACTGAGCAATATTGAAATTACCGAAAATAATAGTTTGTTACGACGCATTTGAGACTTTAATGCTCACGTAAGTTGGCTGGAATCATATCATGTCAGTTAATAAAATAACGTGAGCa < 2:829979/141‑1 (MQ=255) aaaGTAAGTGATAAGGTAAAAATATACTGAGCAATATTGAAATTACCGAAAATAATAGTTTGTTACGACGCATTTGAGACTTTAATGCTCACGTAAGTTGGCTGGAATCATATCATGTCAGTTAATAAAATAACGTGAGCa < 1:62316/141‑1 (MQ=255) gtaagtGATAAGGTAAAAATATACTGAGCAATATTGAAATTACCGAAAATAATAGTTTGTTACGACGCATTTGAGACTTTAATGCTCACGTAAGTTGGCTGGAATCATATCATGTCAGTTAATAAAATAACTTGAGCatca < 1:953276/141‑1 (MQ=255) tGATAAGGTAAAAATATACTGAGCAATATTGAAATTACCGAAAATAATAGTTTGTTACGACGCATTTGAGACTTTAATGCTCACGTAAGTTGGCTGGAATCATATCATGTCAGTTAATAAAATAACGTGAGCATCAatcat > 2:207809/1‑141 (MQ=255) aTAAGGTAAAAATATACTGAGCAATATGGAAAGTACCTAAAATAATATTTTGGTACTACGCATTTGATTCTGGAAGGCGCAGGTAAGTTGGCTGGAATCATATCATGTCAGTTAATAAAATAACGTGAGCATCAAtcatca > 1:158477/1‑141 (MQ=255) ggTAAAAATATACTGAGCAATATTGAAATTACCGAAAATAATAGTTTGTTACGACGCATTTGAGACTTTAATGCTCACGTAAGTTGGCTGGAATCATATCATGTCAGTTAATAAAATAACGTGAGCATCAATCATCATACt > 2:423233/1‑141 (MQ=255) gTAAAAATATACTGAGCAATATTGAAATTACCGAAAATAATAGTTTGTTACGACGCATTTGAGACTTTAATGCTCACGTAAGTTGGCTGGAATCATATCATGTCAGTTAATAAAATAACGTGAGCATCAATCATCATACTc < 1:503218/141‑1 (MQ=255) gTAAAAATATACTGAGCAATATTGAAATTACCGAAAATAATAGTTTGTTACGACGCATTTGAGACTTTAATGCTCACGTAAGTTGGCTGGAATCATATCATGTCAGTTAATAAAATAACGTGAGCATCAATCATCATACTc > 1:1035769/1‑141 (MQ=255) tAAAAATATACTGAGCAATATTGAAATTACCGAAAATAATAGTTTGTTACGACGCATTTGAGACTTTAATGCTCACGTAAGTTGGCTGGAATCATATCATGTCAGTTAATAAAATAACGTGAGCATCAATCATCATACTCa < 2:12772/141‑1 (MQ=255) tAAAAATATACTGAGCAATATTGAAATTACCGAAAATAATAGTTTGTTACGACGCATTTGAGACTTTAATGCTCACGTAAGTTGGCTGGAATCATATCATGTCAGTTAATAAAATAACGTGAGCATCAATCATCATACTCa < 1:629820/141‑1 (MQ=255) aaaaaTATACTGAGCAATATTGAAATTACCGAAAATAATAGTTTGTTACGACGCATTTGAGACTTTAATGCTCACGTAAGTTGGCTGGAATCATATCATGTCAGTTAATAAAATAACGTGAGCATCAATCATCATACTCaa > 2:354761/1‑141 (MQ=255) aaTATACTGAGCAATATTGAAATTACCGAAAATAATAGTTTGTTACGACGCATTTGAGACTTTAATGCTCACGTAAGTTGGCTGGAATCATATCATGTCAGTTAATAAAATAACGTGAGCATCAatcatcgtttgagtatg < 2:461777/141‑12 (MQ=255) atatACTGAGCAATATTGAAATTACCGAAAATAATAGTTTGTTACGACGCATTTGAGACTTTAATGCTCACGTAAGTTGGCTGGAATCATATCATGTCAGTTAATAAAATAACGTGAGCATCAATCATCATACTCAAACga < 1:280869/141‑1 (MQ=255) tataCTGAGCAATATTGAAATTACCGAAAATAATAGTTTGTTACGACGCATTTGAGACTTTAATGCTCACGTAAGTTGGCTGGAATCATATCATGTCAGTTAATAAAATAACGTGAGCATCAATCATCATACTCAAACgat < 1:846738/141‑1 (MQ=255) tataCTGAGCAATATTGAAATTACCGAAAATAATAGTTTGTTACGACGCATTTGAGACTTTAATGCTCACGTAAGTTGGCTGGAATCATATCATGTCAGTTAATAAAATAACGTGAGCATCAATCATCATACTCAAACgat < 1:665581/141‑1 (MQ=255) ataCTGAGCAATATTGAAATTACCGAAAATAATAGTTTGTTACGACGCATTTGAGACTTTAATGCTCACGTAAGTTGGCTGGAATCATATCATGTCAGTTAATAAAATAACGTGAGCATCAATCATCATACTCAAACgatg > 1:261671/1‑141 (MQ=255) taCTGAGCAATATTGAAATTGCCAAAAATAATATCTTGTTACGACGCATTTGAGACTTTAATGCTCACGTAAGTTGGCTGGAATCATATCATGTCAGTTAATAAAATAACGTGAGCATCAATCATCATACTCAAACgatga > 1:74975/1‑141 (MQ=255) aCTGAGCAATATTGAAATTACCGAAAATAATAGTTTGTTACGACGCATTTGAGACTTTAATGCTCACGTAAGTTGGCTGGAATCATATCATGTCAGTTAATAAAATAACGTGAGCATCAATCATCATACTCAAACgatgat < 1:582441/141‑1 (MQ=255) cTGAGCAATATTGAAATTACCGAAAATAATAGTTTGTTACGACGCATTTGAGACTTTAATGCTCACGTAAGTTGGCTGGAATCATATCATGTCAGTTAATAAAATAACGTGAGCATCAATCATCATACTCAAACGATGAtt > 1:215235/1‑141 (MQ=255) cTGAGCAATATTGAAATTACCGAAAATAATAGTTTGTTACGACGCATTTGAGACTTTAATGCTCACGTAAGTTGGCTGGAATCATATCATGTCAGTTAATAAAATAACGTGAGCATCAATCATCATACTCAAACGATGAtt < 2:253323/141‑1 (MQ=255) aGCAATATTGAAATTACAGAAAATAATAGTTTGTTACGACGCATTTGAGACTTTAATGCTCACGTAAGTTGGCTGGAATCATATCATGTCAGTTACTAAAATAACGTGAGCCTCAATCATCATACTCAAACGATGATTTaa < 2:269829/141‑1 (MQ=255) gCAATATTGAAATTACCGAAAATAATAGTTTGTTACGACGCATTTGAGACTTTAATGCTCACGTAAGTTGGCTGGAATCATATCATGTCAGTTAATAAAATAACGTGAGCATCAATCATCATACTCAAACGATGATTTaaa > 1:713078/1‑141 (MQ=255) gCAATATTGAAATTACCGAAAATAATAGTTTGTTACGACGCATTTGAGACTTTAATGCTCACGTAAGTTGGCTGGAATCATATCATGTCAGTTAATAAAATAACGTGAGCATCAATCATCATACTCAAACGATGATTTaaa < 1:656250/141‑1 (MQ=255) atatTGAAATTACCGAAAATAATAGTTTGTTACGACGCATTTGAGACTTTAATGCTCACGTAAGTTGGCTGGAATCATATCATGTCAGTTAATAAAATAACGTGAGCATCAATCATCATACTCAAACGATGATTTAAAACt < 2:1046700/141‑1 (MQ=255) tGAAATTACCGAAAATAATAGTTTGTTACGACGCATTTGAGACTTTAATGCTCACGTAAGTTGGCTGGAATCATATCATGTCAGTTAATAAAATAACGTGAGCATCAATCATCATACTCAAACGATGATTTAAAACTCACg < 1:526498/141‑1 (MQ=255) gAAATTACCGAAAATAATAGTTTGTTACGACGCATTTGAGACTTTAATGCTCACGTAAGTTGGCTGGAATCATATCATGTCAGTTAATAAAATAACGTGAGCATCAATCATCATACTCAAACGATGATTTAAAACTCACGt > 1:316008/1‑141 (MQ=255) aaaTTACCGAAAATAATAGTTTGTTACGACGCATTTGAGACTTTAATGCTCACGTAAGTTGGCTGGAATCATATCATGTCAGTTAATAAAATAACGTGAGTCTCAATTAGCAGACTCAAACGATGATTTAAAACTCACGtt < 1:29732/141‑1 (MQ=255) tACCGAAAATAATAGTTTGTTACGACGCATTTGAGACTTTAATGCTCACGTAAGTTGGCTGGAATCATATCATGTCAGTTAATAAAATAACGTGAGCATCAATCATCATACTCAAACGATGATTTAAAACTCACGTTAATg < 2:671503/141‑1 (MQ=255) cGAAAATAATAGTTTGTTACGACGCATTTGAGACTTTAATGCTCACGTAAGTTGGCTGGAATCATATCATGTCAGTTAATAAAATAACGTGAGCATCAATCATCATACTCAAACGATGATTTAAAACTCACGTTAATGTTa > 1:683852/1‑141 (MQ=255) gAAAATAATAGTTTGTTACGTCGCATTTGAGACTTTAATGCTCACGTAAGTTGGCTGGAATCTTATCATGTCAGTTATTAAATTAACGTGAGCATCAGTCATCATACTCGTACGATGATTTAAAACTCACGTTAATGTTAg < 2:694643/141‑1 (MQ=255) gAAAATAATAGTTTGTTACGACGCATTTGAGACTTTAATGCTCACGTAAGTTGGCTGGAATCATATCATGTCAGTTAATAAAATAACGTGAGCATCAATCATCATACTCAAACGATGATTTAAAACTCACGTTAATGTTAg < 2:791461/141‑1 (MQ=255) | TACTGCCTAAATGTTTACTGTTAGATGTTTTTTTATTGGAAAAATGAAAGGTGAATACACGATGGCATCATTCAAAATCATGACGAGATTAAAGTAAGTGATAAGGTAAAAATATACTGAGCAATATTGAAATTACCGAAAATAATAGTTTGTTACGACGCATTTGAGACTTTAATGCTCACGTAAGTTGGCTGGAATCATATCATGTCAGTTAATAAAATAACGTGAGCATCAATCATCATACTCAAACGATGATTTAAAACTCACGTTAATGTTAG > CP000730/211484‑211761 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |