New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	= 1637435	31 (0.840)	3 (0.080)	3/250	NT	8.6%	coding (1119/1680 nt)	recN	DNA repair protein RecN
	?	CP000730	= 1637444	34 (0.950)					coding (1110/1680 nt)	recN	DNA repair protein RecN

ATTAAAAATTCTACAAATTCGATTCCATCAATATTCGGTTCTTCTAATTTTTTAAATGAAATCTCAAGATTTGCGTCTTTCATTTGTAAGTTTTGAATTTCCGATACAATGTGGTCTCTTAACTCCCTAGCGAC‑TATACGACGCTGCTTTGATAACGCTTGTCCAACCTCTATAACTTGATTATACAATGCATTTATTTCTTCTCGTAACTGCGATGTACTTTGTTCATAGTTTTCAATTTTATTGATTTCATTATTAAGCTTTTCTTGATATGCGATT  >  CP000730/1637304‑1637582                                                                                                                                              |                                                                                                                                           aTTAAAAATTCTACGAATTCGATTCCATCAATATTCGGTTCTTCTAATTTTTTAAATGAAATCCCAAGATTTGCGTCTTTCATTTGTAAGTTTTGAATTTCCGATACAATGTGGTCTCTTAACTCCCTAGCGAC‑TATacga                                                                                                                                            >  1:257887/1‑141 (MQ=255)    aaaaaTTCTACAAATTCGATTCCATCAATATTCGGTTCTTCTAATTTTTTAAATGAAATCTCAAGATTTGCGTCTTTCATTTGTAAGTTTTGAATTTCCGATACAATGTGGTCTCTTAACTCCCTAGCGAC‑TATACGAcgc                                                                                                                                         <  2:7394‑M2/141‑4 (MQ=255)    aaaaaTTCTACAAATTCGATTCCATCAATATTCGGTTCTTCTAATTTTTTAAATGAAATCTCAAGATTTGCGTCTTTCATTTGTAAGTTTTGAATTTCCGATACAATGTGGTCTCTTAACTCCCTAGCGAC‑TATACGAcgc                                                                                                                                         <  1:326187‑M2/141‑4 (MQ=255)          tCTACAAATTCGATTCCATCAATATTCGGTTCTTCTAATTTTTTAAATGAAATCTCAAGATTTGCGTCTTTCATTTGTAAGTTTTGAATTTCCGATACAATGTGGTCTCTTAACTCCCTAGCGAC‑TATACGACGCTGCttt                                                                                                                                   >  1:205340/1‑141 (MQ=255)             aCAAATTCGATTCCATCAATATTCGGTTCTTCTAATTTTTTAAATGAAATCTCAAGATTTGCGTCTTTCATTTGTAAGTTTTGAATTTCCGATACAATGTGGTCTCTTAACTCCCTAGCGAC‑TATACGACGCTGCTTTGAt                                                                                                                                <  2:398414/141‑1 (MQ=255)             aCAAATTCGATTCCATCAATATTCGGTTCTTCTAATTTTTTAAATGAAATCTCAAGATTTGCGTCTTTCATTTGTAAGTTTTGAATTTCCGATACAATGTGGTCTCTTAACTCCCTAGCGAC‑TATACGACGCTGCTTTGAt                                                                                                                                <  2:34919/141‑1 (MQ=255)                 aTTCGATTCCATCAATATTCGGTTCTTCTAATTTTTTAAATGAAATCTCAAGATTTGCGTCTTTCATTTGTAAGTTTTGAATTTCCGATACAATGTGGTCTCTTAACTCCCTAGCGAC‑TATACGACGCTGCTTTGATAACg                                                                                                                            >  2:430820/1‑141 (MQ=255)                 aTTCGATTCCATCAATATTCGGTTCTTCTAATTTTTTAAATGAAATCTCAAGATTTGCGTCTTTCATTTGTAAGTTTTGAATTTCCGATACAATGTGGTCTCTTAACTCCCTAGCGAC‑TATACGACGCTGCTTTGATAACg                                                                                                                            >  2:142163/1‑141 (MQ=255)                  ttCGATTCCATCAATATTCGGTTCTTCTAATTTTTTAAATGAAATCTCAAGATTTGCGTCTTTCATTTGTAAGTTTTGAATTTCCGATACAATGTGGTCTCTTAACTCCCTAGCGAC‑TATACGACGCTGCTTTGATAACGc                                                                                                                           <  2:93673/141‑1 (MQ=255)                      aTTCCATCAATATTCGGTTCTTCTAATTTTTTAAATGAAATCTCAAGATTTGCGTCTTTCATTTGTAAGTTTTGAATTTCCGATACAATGTGGTCTCTTAACTCCCTAGCGAC‑TATACGACGCTGCTTTGATAACGCTTGt                                                                                                                       >  1:391116/1‑141 (MQ=255)                        tCCATCAATATTCGGTTCTTCTAATTTTTTAAATGAAATCTCAAGATTTGCGTCTTTCATTTGTAAGTTTTGAATTTCCGATACAATGTGGTCTCTTAACTCCCTAGCGAC‑TATACGACGCTGCTTTGATAACGCTTGTcc                                                                                                                     >  1:240217/1‑141 (MQ=255)                            tCAATATTCGGTTCTTCTAATTTTTTAAATGAAATCTCAAGATTTGCGTCTTTCATTTGTAAGTTTTGAATTTCCGATACAATGTGGTCTCTTAACTCCCTAGCGAC‑TATACGACGCTGCTTTGATAACGCTTGTCCAAcc                                                                                                                 <  2:240217/141‑1 (MQ=255)                                   tCGGTTCTTCTAATTTTTTAAATGAAATCTCAAGATTTGCGTCTTTCATTTGTAAGTTTTGAATTTCCGATACAATGTGGTCTCTTAACTCCCTAGCGAC‑TCTACGACGCTGCTTTGATAACGCTTGTCCAACCTCTATaa                                                                                                          >  1:388185/1‑141 (MQ=255)                                    cGGTTCTTCTAATTTTTTAAATGAAATCTCAAGATTTGCGTCTTTCATTTGTAAGTTTTGAATTTCCGATACAATGTGGTCTCTTAACTCCCTAGCGAC‑TATACGACGCTGCTTTGATAACGCTTGTCCAACCTCTATAAc                                                                                                         >  1:7126/1‑141 (MQ=255)                                     ggTTCTTCTAATTTTTTAAATGAAATCTCAAGATTTGCGTCTTTCATTTGTAAGTTTTGAATTTCCGATACAATGTGGTCTCTTAACTCCCTAGCGTCGTATA‑GTcgctagggagttaagagaccacat                                                                                                                    >  1:375331‑M2/1‑105 (MQ=255)                                     ggTTCTTCTAATTTTTTAAATGAAATCTCAAGATTTGCGTCTTTCATTTGTAAGTTTTGAATTTCCGATACAATGTGGTCTCTTAACTCCCTAGCGTCGTATA‑GTcgctagggagttaagagaccacat                                                                                                                    <  2:375331‑M2/129‑25 (MQ=255)                                        tcttctAATTTTTTAAATGAAATCTCAAGATTAGCGTCTTTCATTTGTAAGTTTTGAATTTCCGATACAATGTGGTCTCTTAACTCCCTAGCGAC‑TATACGACGCTGCTTTGATAACGCTTGTCCAACCTCTATAACTTGa                                                                                                     >  2:40639/1‑141 (MQ=255)                                                     tAAATGAAATCTCAAGATTTGCGTCTTTCATTTGTAAGTTTTGAATTTCCGATACAATGTGGTCTCTTAACTCCCTAGCGAC‑TATACGACGCTGCTTTGATAACGCTTGTCCAACCTCTATAACTTGATTATACAATGCat                                                                                        >  2:162265/1‑141 (MQ=255)                                                     tAAATGAAATCTCAAGATTTGCGTCTTTCATTTGTAAGTTTTGAATTTCCGATACAATGTGGTCTCTTAACTCCCTAGCGAC‑TATACGACGCTGCTTTGATAACGCTTGTCCAACCTCTATAACTTGATTATACAATGCat                                                                                        <  1:225073/141‑1 (MQ=255)                                                       aaTGAAATCTCAAGATTTGCGTCTTTCATTTGTAAGTTTTGAATTTCCGATACAATGTGGTCTCTTAACTCCCTAGCGAC‑TATACGACGCTGCTTTGATAACGCTTGTCCAACCTCTATAACTTGATTATACAATGCattt                                                                                      >  2:456774/1‑141 (MQ=255)                                                       aaTGAAATCTCAAGATTTGCGTCTTTCATTTGTAAGTTTTGAATTTCCGATACAATGTGGTCTCTTAACTCCCTAGCGAC‑TATACGACGCTGCTTTGATAACGCTTGTCCAACCTCTATAACTTGATTATACAATGCattt                                                                                      >  2:113668/1‑141 (MQ=255)                                                                 tgaGATTTGCGTCTTTCATTTGTAAGTTTTGAATTTCCGATACAATGTGGTCTCTTAACTCCCTAGCGAC‑TATACGACGCTGCTTTGATAACGCTTGTCCAACCTCTATAACTTGATTATACAATGCATTTATTTCTtctc                                                                            >  2:8632/3‑141 (MQ=255)                                                                   aGATTTGCGTCTTTCATTTGTAAGTTTTGAATTTCCGATACAATGTGGACTCTTAACTCCCTAGCGAC‑TATACGACGCTGCTTTGATAACGCTTGTCCAACCTCTATAACTTGATTATACAATGCATTTATTTCTTCGCGt                                                                          >  1:322728/1‑141 (MQ=255)                                                                       ttGCGTCTTTCATTTGTAAGTTTTGAATTTCCGATACAATGTGGTCTCTTAACTCCCTAGCGAC‑TATACGACGCTGCTTTGATAACGCTTGTCCAACCTCTATAACTTGATTATACAATGCATTTATTTCTTCTCGTAACt                                                                      <  2:203752/141‑1 (MQ=255)                                                                           gTCTTTCATTTGTAAGTTTTGAATTTCCGATACAATGTGGTCTCTTAACTCCCTAGCGAC‑TATACGACGCTGCTTTGATAACGCTTGTCCAACCTCTATAACTTGATTATACAATGCATTTATTTCTTCTCGTAACTGCGa                                                                  <  1:107317/141‑1 (MQ=255)                                                                             cTTTCATTTGTAAGTTTTGAATTTCCGATACAATGTGGTCTCTTAACTCCCTAGCGAC‑TATACGACGCTGCTTTGATAACGCTTGTCCAACCTCTATAACTTGATTATACAATGCATTTATTTCTTCTCGTAACTGCGATg                                                                <  2:206639/141‑1 (MQ=255)                                                                                             ttGAATTTCCGATACAATGTGGTCTCTTAACTCCCTAGCGAC‑TATACGACGCTGCTTTGATAACGCTTGTCCAACCTCTATAACTTGATTATACAATGCATTTATTTCTTCTCGTAACTGCGATGTACTTTGTTCATAGtt                                                <  2:391116/141‑1 (MQ=255)                                                                                                            aaTGTGGTCTCTTAACTCCCTAGCGAC‑TATACGACGCTGCTTTGATAACGCTTGTCCAACCTCTATAACTTGATTATACAATGCATTTATTTCTTCTCGTAACTGCGATGTACTTTGTTCATAGTTTTCAATTTTATTGAt                                 >  2:66425/1‑141 (MQ=255)                                                                                                             aTGTGGTCTCTTAACTCCCTAGCGAC‑TATACGACGCTGCTTTGATAACGCTTGTCCAACCTCTATAACTTGATTATACAATGCATTTATTTCTTCTCGTAACTGCGATGTACTTTGTTCATAGTTTTCAATTTTATTGAtt                                <  1:364753/141‑1 (MQ=255)                                                                                                                      ctTAACTCCCTAGCGAC‑TATACGACGCTGCTTTGATAACGCTTGTCCAACCTCTATAACTTGATTATACAATGCATTTATTTCTTCTCGTAACTGCGATGTACTTTGTTCATAGTTTTCAATTTTATTGATTTCAttatta                       <  2:455787/141‑1 (MQ=255)                                                                                                                         aaCTCCCTAGCGAC‑TATACGACGCTGCTTTGATAACGCTTGTCCAACCTCTATAACTTGATTATACAATGCATTTATTTCTTCTCGTAACTGCGATTTACTTTGTTCATAGTTTTCAATTTTATTGATTTCATTATTAAGc                    >  1:413326/1‑141 (MQ=255)                                                                                                                         aaCTCCCTAGCGAC‑TATACGACGCTGCTTTGATAACGCTTGTCCAACCTCTATAACTTGATTATACAATGCATTTATTTCTTCTCGTAACTGCGATGTACTTTGTTTATAGTTTTTATTTTTATTGATTTCAttattattt                    >  2:415034/1‑138 (MQ=255)                                                                                                                            tCCCTAGCGAC‑TATACGACGCTGCTTTGATAACGCTTGTCCAACCTCTATAACTTGATTATACAATGCATTTATTTCTTCTCGTAACTGCGATGTACTTTGTTCATAGTTTTCAATTTTATTGATTTCATTATTAAGCttt                 <  1:114305/141‑1 (MQ=255)                                                                                                                              ccTAGCGAC‑TATACGACGCTGCTTTGATAACGCTTGTCCAACCTCTATAACTTGATTATACAATGCATTTATTTCTTCTCGTAACTGCGATGTACTTTGTTCATAGTTTTCAATTTTATTGATTTCATTATTAAGCTTTTc               >  1:301570/1‑141 (MQ=255)                                                                                                                                tAGCGAC‑TATACGACGCTGCTTTGATAACGCTTGTCCAACCTCTATAACTTGATTATACAATGCATTTATTTCTTCTCGTAACTGCGATGTACTTTGTTCATAGTTTTCAATTTTATTGATTTCATTATTAAGCTTTTCtt             >  1:220282/1‑141 (MQ=255)                                                                                                                                tAGCGAC‑TATACGACGCTGCTTTGATAACGCTTGTCCAACCTCTATAACTTGATTATACAATGCATTTATTTCTTCTCGTAACTGCGATGTACTTTGTTCATAGTTTTCAATTTTATTGATTTCATTATTAAGCTTTTCtt             >  1:348625/1‑141 (MQ=255)                                                                                                                                tAGCGAC‑AATACGACGCTGCTTTGATAACGCTTGTCCAACCTCTATAACTTGATTATACAATGCATTTATTTCTTCTCGTAACTGCGATGTACTTTGTTCATAGTTTTCAATTTTATTGATTTCATTATTAAGCTTTTCtt             <  2:337381/141‑1 (MQ=255)                                                                                                                                 aGCGAC‑TATACGACGCTGCTTTGATAACGCTTGTCCAACCTCTATAACTTGATTATACAATGCATTTATTTCTTCTCGTAACTGCGATGTACTTTGTTCATAGTTTTCAATTTTATTGATTTCATTATTAAGCTTTTCTTg            >  2:218141/1‑141 (MQ=255)                                                                                                                                  gCGAC‑TATACGACGCTGCTTTGATAACGCTTGTCCAACCTCTATAACTTGATTATACAATGCATTTATTTCTTCTCGTAACTGCTATGTACTTTGTTCATATTTTTCAATTTTATTTATTTCATGATTAAGCTTTTCTTGa           >  2:102717/1‑141 (MQ=255)                                                                                                                                      c‑TATACGACGCTGCTTTGATAACGCTTGTCCAACCTCTATAACTTGATTATACAATGCATTTATTTCTTCTCGTAACTGCGATGTACTTTGTTCATAGTTTTCAATTTTATTGATTTCATTATTAAGCTTTTCTTGATATg       <  2:377048/141‑1 (MQ=255)                                                                                                                                        tataCGAcgctagggagttaagagaccacattgtatcggaaattcaaaacttacaaatgaaagacgcaaatcttgagatttcatttaaaaaattagaagaaccgaatattgatggaatcgaatttgtagaatttttaatca      <  2:237427‑M2/141‑135 (MQ=255)                                                                                                                                            cgacgCTGCTTTGATAACGCTTGTCCAACCTCTATAACTTGATTATACAATGCATTTATTTCTTCTCGTAACTGCGATGTACTTTGTTCATAGTTTTCAATTTTATTGATTTCATTATTAAGCTTTTCTTGATATGCGAtt  <  1:208312/141‑1 (MQ=255)                                                                                                                                            cgacgCTGCTTTGATAACGCTTGTCCAACCTCTATAACTTGATTATACAATGCATTTATTTCTTCTCGTAACTGCGATGTACTTTGTTCATAGTTTTCAATTTTATTGATTTCATTATTAAGCTTTTCTTGATATGCGAtt  >  1:314226/1‑141 (MQ=255)                                                                                                                                              |                                                                                                                                           ATTAAAAATTCTACAAATTCGATTCCATCAATATTCGGTTCTTCTAATTTTTTAAATGAAATCTCAAGATTTGCGTCTTTCATTTGTAAGTTTTGAATTTCCGATACAATGTGGTCTCTTAACTCCCTAGCGAC‑TATACGACGCTGCTTTGATAACGCTTGTCCAACCTCTATAACTTGATTATACAATGCATTTATTTCTTCTCGTAACTGCGATGTACTTTGTTCATAGTTTTCAATTTTATTGATTTCATTATTAAGCTTTTCTTGATATGCGATT  >  CP000730/1637304‑1637582

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.